Jatropha Genome Database

JcCB0432051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432051.10 - phase: 0 /partial
         (170 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05410.1 | Symbols:  | transducin family protein / WD-40 repe...    82   1e-16
AT4G21130.1 | Symbols: EMB2271 | EMB2271 (EMBRYO DEFECTIVE 2271)...    58   3e-09

>AT4G05410.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr4:2743229-2745521 REVERSE
          Length = 504

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 25  DPFFSKESKKRRKMDYNDDYIESGESE-EENGFLSGGXXXXXXXXXXXXXX--XXXTADE 81
           DPFF +E KKRRK+ Y+DD IES +S+ EENGF  G                    TA E
Sbjct: 25  DPFFEEEPKKRRKVSYDDDDIESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADETAGE 84

Query: 82  KRQRVAKAYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVLKKLMQAQLEESGRLRR 141
           KR+R+A+  +                                + K LMQ Q E+SGR+RR
Sbjct: 85  KRKRLAEEMLNRRREAMRREREEADNDDDDDEDDDET-----IKKSLMQKQQEDSGRIRR 139

Query: 142 AIASRVEKPETVGGFEVLVKHRHSVTAVC 170
            IASRV++P +  GF V+VKHR SV +V 
Sbjct: 140 LIASRVQEPLSTDGFSVIVKHRRSVVSVA 168


>AT4G21130.1 | Symbols: EMB2271 | EMB2271 (EMBRYO DEFECTIVE 2271);
           nucleotide binding | chr4:11274308-11276286 FORWARD
          Length = 479

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 18/149 (12%)

Query: 22  FNEDPFFSKESKKRRKMDYNDDY-IESGESEEENGFLSGGXXXXXXXXXXXXXXXXXTAD 80
            + DPF  +E++KRRK +Y+DD  IES ESEEE                        T  
Sbjct: 20  IDHDPFLEEETEKRRKFNYDDDDDIESVESEEEG----------KVGEEVEDEFAHETVG 69

Query: 81  EKRQRVAKAYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVLKKLMQAQLEESGRLR 140
           EKR+R+A+  +                              S V K LMQ QLE+SGR+R
Sbjct: 70  EKRKRLAEDTLNRIEEAKQREHEEDNEEDDDFRD-------SLVAKTLMQEQLEKSGRVR 122

Query: 141 RAIASRVEKPETVGGFEVLVKHRHSVTAV 169
           RA A RV+  ++   F V+VKH+HSVT V
Sbjct: 123 RANALRVQDLQSSDKFRVIVKHQHSVTGV 151