Jatropha Genome Database
- JcCB0430801.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0430801.10 + phase: 2 /pseudo/partial
(195 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37520.1 | Symbols: | PHD finger family protein | chr2:15745... 201 3e-52
AT3G53680.1 | Symbols: | PHD finger transcription factor, putat... 159 1e-39
AT2G36720.1 | Symbols: | PHD finger transcription factor, putat... 139 2e-33
AT2G27980.1 | Symbols: | protein binding / zinc ion binding | c... 103 9e-23
AT5G36740.1 | Symbols: | PHD finger family protein | chr5:14460... 89 2e-18
AT5G36670.1 | Symbols: | PHD finger family protein | chr5:14401... 88 3e-18
AT1G05380.2 | Symbols: | DNA binding | chr1:1577231-1582190 FOR... 75 3e-14
AT1G05380.1 | Symbols: | DNA binding | chr1:1577231-1582190 FOR... 75 3e-14
AT3G14980.1 | Symbols: | PHD finger transcription factor, putat... 71 4e-13
AT4G14920.1 | Symbols: | DNA binding / protein binding / zinc i... 70 9e-13
AT5G58610.1 | Symbols: | PHD finger transcription factor, putat... 64 8e-11
AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP... 53 1e-07
AT5G12400.1 | Symbols: | PHD finger transcription factor, putat... 47 7e-06
>AT2G37520.1 | Symbols: | PHD finger family protein |
chr2:15745033-15749615 REVERSE
Length = 854
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 112/151 (74%), Gaps = 11/151 (7%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
GYKQG+GIVCSCC REISPSQFEAHAGMAARRQPYRHI+ S+GL+LHDIA+SLANG +T
Sbjct: 429 GYKQGSGIVCSCCSREISPSQFEAHAGMAARRQPYRHIFISSGLSLHDIAMSLANGHVIT 488
Query: 115 SGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC----------IKS 164
+G SDDMC+ CGDGG L+ C CP+AFH CL Q +P+G W C SC +
Sbjct: 489 TGDSDDMCSICGDGGDLLLCAGCPQAFHTACLKFQSMPEGTWYCSSCNDGPISSKKATTT 548
Query: 165 GHGGNFTRPIIIRLTRVVKMPEYEVGGCAVC 195
GN RPI+IRL+RVVK PE ++GGC C
Sbjct: 549 DPSGN-ARPIVIRLSRVVKAPESDIGGCVFC 578
>AT3G53680.1 | Symbols: | PHD finger transcription factor, putative
| chr3:19892863-19897412 REVERSE
Length = 839
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNV- 113
GYKQG+GIVCSCCD +ISPSQFEAHAGMA RRQPYR I+ S+GL+LHDIA+SLA+G +V
Sbjct: 421 GYKQGSGIVCSCCDTKISPSQFEAHAGMAGRRQPYRRIHISSGLSLHDIAVSLADGGHVI 480
Query: 114 TSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
T+G SDDMC+ CG+GG L+ C CP+AFH CL Q +P+G W C SC
Sbjct: 481 TTGDSDDMCSICGNGGDLLLCAGCPQAFHTACLKFQSMPEGTWYCSSC 528
>AT2G36720.1 | Symbols: | PHD finger transcription factor, putative
| chr2:15393447-15399189 FORWARD
Length = 1007
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 94/159 (59%), Gaps = 18/159 (11%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
GYK G GI C CC E+SPS FEAHAG A+RR+PY +IYTSNG++LH+ A + ++G+ +
Sbjct: 551 GYKMGAGIYCYCCKCEVSPSLFEAHAGWASRRKPYFYIYTSNGVSLHEWATTFSHGRKYS 610
Query: 115 SGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC------------- 161
+ ++D+C C DGG L+ C+SCPRAFH+EC+ L +P+G W C C
Sbjct: 611 ANDNNDLCVICADGGNLLLCDSCPRAFHIECVSLPSIPRGNWHCKYCENKFTSEIAGEYN 670
Query: 162 -----IKSGHGGNFTRPIIIRLTRVVKMPEYEVGGCAVC 195
+ G + + R RVVK E E GC +C
Sbjct: 671 VNSSAVGQLEGVDPVDQLAGRCIRVVKNMEAETNGCVLC 709
>AT2G27980.1 | Symbols: | protein binding / zinc ion binding |
chr2:11913950-11919741 REVERSE
Length = 1057
Score = 103 bits (256), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 15/108 (13%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
GYK+G GI CSCC++ +SPS FEAHAG A+RR+P++HIYT+NG++LH+++++L+ Q +
Sbjct: 631 GYKKGFGIHCSCCNKVVSPSTFEAHAGCASRRKPFQHIYTTNGVSLHELSVALSMDQRFS 690
Query: 115 SGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSCI 162
+DD+C+ C DG C L +P W C C+
Sbjct: 691 IHENDDLCSICRDG---------------VCASLPSLPSERWSCKYCV 723
>AT5G36740.1 | Symbols: | PHD finger family protein |
chr5:14460790-14465727 FORWARD
Length = 1179
Score = 89.0 bits (219), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 50 CQRTSGYKQG----NGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAI 105
C++T +G GI C+CCD S FE HAG R QP++ +Y G +L
Sbjct: 566 CKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAG-GNRNQPFKSLYLEGGNSLLQCLH 624
Query: 106 SLANGQNVT-----------SG-VSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPK 153
N Q+ + SG +DD C CGDGG LI C+ CP FH CLD++ P
Sbjct: 625 ESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPS 684
Query: 154 GVWQCPSC 161
G W C +C
Sbjct: 685 GAWYCYNC 692
>AT5G36670.1 | Symbols: | PHD finger family protein |
chr5:14401491-14406427 FORWARD
Length = 1193
Score = 87.8 bits (216), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 50 CQRTSGYKQG----NGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAI 105
C++T +G GI C+CCD S FE HAG R QP++ +Y G +L
Sbjct: 566 CKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAG-GNRNQPFKSLYLEGGNSLLQCLH 624
Query: 106 SLANGQNVT-----------SG-VSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPK 153
N Q+ + SG +DD C CGDGG LI C+ CP FH CLD++ P
Sbjct: 625 ESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPS 684
Query: 154 GVWQCPSC 161
G W C +C
Sbjct: 685 GAWYCYNC 692
>AT1G05380.2 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1138
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 22/137 (16%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
G+ GI C CC + ++ S+FE HAG + QP+++IY +G +L + N Q
Sbjct: 550 GWITREGIHCDCCSKILTVSRFEIHAGSKSC-QPFQNIYLESGASLLQCQVRAWNMQKDA 608
Query: 115 SGVS------------DDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSCI 162
+ ++ DD C CGDGG LI C+ CP +H CL +Q +P G W CP+C
Sbjct: 609 TNLALHQVDTDGDDPNDDACGICGDGGDLICCDGCPSTYHQNCLGMQVLPSGDWHCPNCT 668
Query: 163 ---------KSGHGGNF 170
G GNF
Sbjct: 669 CKFCDAAVASGGKDGNF 685
>AT1G05380.1 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1138
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 22/137 (16%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
G+ GI C CC + ++ S+FE HAG + QP+++IY +G +L + N Q
Sbjct: 550 GWITREGIHCDCCSKILTVSRFEIHAGSKSC-QPFQNIYLESGASLLQCQVRAWNMQKDA 608
Query: 115 SGVS------------DDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSCI 162
+ ++ DD C CGDGG LI C+ CP +H CL +Q +P G W CP+C
Sbjct: 609 TNLALHQVDTDGDDPNDDACGICGDGGDLICCDGCPSTYHQNCLGMQVLPSGDWHCPNCT 668
Query: 163 ---------KSGHGGNF 170
G GNF
Sbjct: 669 CKFCDAAVASGGKDGNF 685
>AT3G14980.1 | Symbols: | PHD finger transcription factor, putative
| chr3:5039931-5044811 REVERSE
Length = 1189
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 54 SGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAI-------- 105
+G +G+VC+CC++ +S S+F+ HAG + P +++ +G +
Sbjct: 650 TGLVTKDGVVCTCCNKTVSLSEFKNHAGFN-QNCPCLNLFMGSGKPFASCQLEAWSAEYK 708
Query: 106 SLANGQNVTSGV----SDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
+ NG + +DD C CGDGG LI C++CP FH CL +Q +P+G W C SC
Sbjct: 709 ARRNGWRLEKASDDDPNDDSCGVCGDGGELICCDNCPSTFHQACLSMQVLPEGSWYCSSC 768
>AT4G14920.1 | Symbols: | DNA binding / protein binding / zinc ion
binding | chr4:8531157-8535842 REVERSE
Length = 1110
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQN-- 112
G+ +GI C CC + ++ S+FE HAG + RQP+++I+ ++G++L I + Q
Sbjct: 577 GWITRDGIHCGCCSKILAVSKFEIHAG-SKLRQPFQNIFLNSGVSLLQCQIDAWDKQKGA 635
Query: 113 ----------VTSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQ 149
+ +DD C CGDGG L+ C+ CP FH CLD++
Sbjct: 636 GNIGFCSVDVIADDPNDDACGICGDGGDLVCCDGCPSTFHQRCLDIR 682
>AT5G58610.1 | Symbols: | PHD finger transcription factor, putative
| chr5:23686771-23691053 REVERSE
Length = 1065
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 52 RTSGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQ 111
R G GI CSCC R + + FE HA A +I+ +G +L + + +
Sbjct: 617 RKEGKLTREGIKCSCCRRVFTINGFEVHAN-GASCSGAANIFLDDGRSLLECQVEAYKKR 675
Query: 112 N-----------VTSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPS 160
+ G +D C+ C GG LI C+ CP AFH CL L+ VP G W C S
Sbjct: 676 KKAQPPDMLKMKLRQGENDVFCSVCHYGGKLILCDGCPSAFHANCLGLEDVPDGDWFCQS 735
Query: 161 C 161
C
Sbjct: 736 C 736
>AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
binding / DNA binding / chromatin binding / helicase/
nucleic acid binding / protein binding / zinc ion
binding | chr5:18083659-18092162 REVERSE
Length = 2242
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 122 CAKCGDGGGLIFCESCPRAFHLECLD--LQCVPKGVWQCPSC 161
C C GG L+ C+SCPR +H CL+ L+ +P G W CP C
Sbjct: 78 CVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKC 119
>AT5G12400.1 | Symbols: | PHD finger transcription factor, putative
| chr5:4013813-4020909 FORWARD
Length = 1595
Score = 47.0 bits (110), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 85 RRQPYRHIYTSNGLTLHDIAISLANGQNVTSGVSDDMCAKCGDGGGLIFCESCPRAFHLE 144
RR+ + ++ +L++ I + +N SDD C C G L+ C+ CP A+H +
Sbjct: 580 RRRKRTMMELADDFSLNNEVIDTSFDRN-----SDD-CCFCKMDGSLLCCDGCPAAYHSK 633
Query: 145 CLDL--QCVPKGVWQCPSC 161
C+ L +P+G W CP C
Sbjct: 634 CVGLASHLLPEGDWYCPEC 652