Jatropha Genome Database

JcCB0430531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430531.10 - phase: 0 /pseudo/partial
         (155 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08130.3 | Symbols:  | BIM1; DNA binding / protein binding / ...   134   2e-32
AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein bindin...   132   6e-32
AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein bindin...   132   1e-31
AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like pr...    97   3e-21
AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like pr...    77   5e-15

>AT5G08130.3 | Symbols:  | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2608652 REVERSE
          Length = 408

 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 99/144 (68%), Gaps = 15/144 (10%)

Query: 1   MIKSAKGSTQDDNLDDEEEFVLKKESSSPV--HKGELRVKVD--GKSTDQKANTPRSKHS 56
           MI+SAKGS+Q+D+LDDEE+F++KKESSS    H+ +LRVK D  G   DQK NTPRSKHS
Sbjct: 103 MIRSAKGSSQEDDLDDEEDFIMKKESSSTSQSHRVDLRVKADVRGSPNDQKLNTPRSKHS 162

Query: 57  ATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECWRHLHILQVIEYIQFLQEKVQ 116
           ATEQRRRSKIND    +++          + ++           +L+VIEYIQFLQEK  
Sbjct: 163 ATEQRRRSKINDRFQMLRQLIPNSDQKRDKASF-----------LLEVIEYIQFLQEKAD 211

Query: 117 KYEGSYQGWNHEPAKLVPWRNGNR 140
           KY  SYQGWNHEPAKL+ W N N+
Sbjct: 212 KYVTSYQGWNHEPAKLLNWSNNNQ 235


>AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2608652 REVERSE
          Length = 409

 Score =  132 bits (333), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 15/143 (10%)

Query: 1   MIKSAKGSTQDDNLDDEEEFVLKKESSSPV--HKGELRVKVD--GKSTDQKANTPRSKHS 56
           MI+SAKGS+Q+D+LDDEE+F++KKESSS    H+ +LRVK D  G   DQK NTPRSKHS
Sbjct: 103 MIRSAKGSSQEDDLDDEEDFIMKKESSSTSQSHRVDLRVKADVRGSPNDQKLNTPRSKHS 162

Query: 57  ATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECWRHLHILQVIEYIQFLQEKVQ 116
           ATEQRRRSKIND    +++          + ++           +L+VIEYIQFLQEK  
Sbjct: 163 ATEQRRRSKINDRFQMLRQLIPNSDQKRDKASF-----------LLEVIEYIQFLQEKAD 211

Query: 117 KYEGSYQGWNHEPAKLVPWRNGN 139
           KY  SYQGWNHEPAKL+ W++ N
Sbjct: 212 KYVTSYQGWNHEPAKLLNWQSNN 234


>AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2609571 REVERSE
          Length = 529

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 15/143 (10%)

Query: 1   MIKSAKGSTQDDNLDDEEEFVLKKESSSPV--HKGELRVKVD--GKSTDQKANTPRSKHS 56
           MI+SAKGS+Q+D+LDDEE+F++KKESSS    H+ +LRVK D  G   DQK NTPRSKHS
Sbjct: 223 MIRSAKGSSQEDDLDDEEDFIMKKESSSTSQSHRVDLRVKADVRGSPNDQKLNTPRSKHS 282

Query: 57  ATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECWRHLHILQVIEYIQFLQEKVQ 116
           ATEQRRRSKIND    +++          + ++           +L+VIEYIQFLQEK  
Sbjct: 283 ATEQRRRSKINDRFQMLRQLIPNSDQKRDKASF-----------LLEVIEYIQFLQEKAD 331

Query: 117 KYEGSYQGWNHEPAKLVPWRNGN 139
           KY  SYQGWNHEPAKL+ W++ N
Sbjct: 332 KYVTSYQGWNHEPAKLLNWQSNN 354


>AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like
           protein 2); DNA binding / transcription factor |
           chr1:25941804-25943599 FORWARD
          Length = 311

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 15/154 (9%)

Query: 2   IKSAKGSTQDDNLDDEEEFVLKKESSSPVHKGELRVKVDGKSTDQKANTPRSKHSATEQR 61
           +++ KG+ ++++   EE+F  K+E   P     +    D K  D KA+  RSKHS TEQR
Sbjct: 1   MRTGKGNQEEEDYG-EEDFNSKREG--PSSNTTVHSNRDSKEND-KASAIRSKHSVTEQR 56

Query: 62  RRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECWRHLHILQVIEYIQFLQEKVQKYEGS 121
           RRSKIN+    ++E            ++           +L+VI+Y+Q+LQEKVQKYEGS
Sbjct: 57  RRSKINERFQILRELIPNSEQKRDTASF-----------LLEVIDYVQYLQEKVQKYEGS 105

Query: 122 YQGWNHEPAKLVPWRNGNRPTESYADQSQGINGG 155
           Y GW+ EP KL PWRN +   +S  +    IN G
Sbjct: 106 YPGWSQEPTKLTPWRNNHWRVQSLGNHPVAINNG 139


>AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like
           protein 3); DNA binding / transcription factor |
           chr5:15559083-15560911 FORWARD
          Length = 298

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 40  DGKSTDQKANTPRSKHSATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECWRHL 99
           D  +  +  N+ RSKHS TEQRRRSKIN+    + +              S +       
Sbjct: 23  DSSTGRRNRNSCRSKHSETEQRRRSKINERFQSLMDIIPQNQNDQKRDKASFL------- 75

Query: 100 HILQVIEYIQFLQEKVQKYEGSYQGWNHEPAKLVPWRNG 138
             L+VIEYI FLQEKV  YE S+Q W   P KL+PWRN 
Sbjct: 76  --LEVIEYIHFLQEKVHMYEDSHQMWYQSPTKLIPWRNS 112