Jatropha Genome Database
- JcCB0430471.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0430471.20 - phase: 0
(101 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 70 3e-13
AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 65 6e-12
AT2G22770.1 | Symbols: NAI1 | NAI1; DNA binding / transcription ... 65 6e-12
AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 64 1e-11
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 64 1e-11
>AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:17796362-17797647 REVERSE
Length = 328
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 15/105 (14%)
Query: 2 LEEQAKKKIVESALLVNRPQPSVDEKFDNNLNHP-----------LPEIEAKVLDQSVLV 50
LEEQ K++ +ES +LV + + +D DNN + LPEIE + D+ VL+
Sbjct: 204 LEEQKKERRLESMVLVKKSKLILD---DNNQSFSSSCEDGFSDLDLPEIEVRFSDEDVLI 260
Query: 51 RIHCEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQ 95
+I CEK KG+LAK++ E+EKL +++ +++L FG T+D+T+I +
Sbjct: 261 KILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGP-TLDITIIAK 304
>AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:9678012-9679165 FORWARD
Length = 295
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 19/113 (16%)
Query: 3 EEQAKKKIVESALLVNRPQ------------PSVDEKFDNNLNHPLPEIEAKVLDQSVLV 50
EE+ + +ES +LV + + PSV +FD LPEIEAK+ +L+
Sbjct: 173 EEKEATRQMESMILVKKSKVFFDEEPNLSCSPSVHIEFD----QALPEIEAKISQNDILI 228
Query: 51 RIHCEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQV---WSMN 100
RI CEK+KG + +L+ +E L + + +LPFG T+D+TV+ Q+ +SM+
Sbjct: 229 RILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQMDKDFSMS 281
>AT2G22770.1 | Symbols: NAI1 | NAI1; DNA binding / transcription
factor | chr2:9684858-9686321 FORWARD
Length = 320
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 32 LNHPLPEIEAKVLDQSVLVRIHCEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLT 91
+P IEA+V D+ +L+R+HCEKNKG + K+L LEK L VV + LPFG+ T+ +T
Sbjct: 235 FKQTMPMIEARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVIT 294
Query: 92 VIGQV 96
++ ++
Sbjct: 295 ILTKM 299
>AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:9672145-9673624 FORWARD
Length = 304
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 36 LPEIEAKVLDQSVLVRIHCEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQ 95
LPEIE +V + VL++I CEK KGN+ K++ E+EKL L + +N+LPFG T D+++I Q
Sbjct: 223 LPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGP-TFDISIIAQ 281
>AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:9672145-9673624 FORWARD
Length = 305
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 36 LPEIEAKVLDQSVLVRIHCEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQ 95
LPEIE +V + VL++I CEK KGN+ K++ E+EKL L + +N+LPFG T D+++I Q
Sbjct: 223 LPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGP-TFDISIIAQ 281