Jatropha Genome Database

JcCB0430471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430471.10 + phase: 1 /partial
         (193 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04390.1 | Symbols:  | protein binding | chr1:1179678-1183615...   165   2e-41

>AT1G04390.1 | Symbols:  | protein binding | chr1:1179678-1183615
           REVERSE
          Length = 849

 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 116/179 (64%), Gaps = 7/179 (3%)

Query: 22  QCRICIVTKLCCGQVVIIL-------RALFQSGMLESDSETIKVPVSWEAMTKFVNWCYT 74
            CR+C +T        +IL       RALF+SGM ES  + + VPVSW  +TK V+W Y+
Sbjct: 670 NCRMCSLTSPHAHSHRVILSSGCEYLRALFRSGMQESHLDRLNVPVSWLGLTKLVSWFYS 729

Query: 75  DELPSPPSGCLWDNMDTEERLSVLQPYXXXXXXXXXXXXXDVQDISYRVIISYLDSARHL 134
           DELP PPSGC W+NMDTE +L  LQ Y             ++Q+    VI+S L+SAR L
Sbjct: 730 DELPKPPSGCKWNNMDTEAKLDELQAYVEIYSLSEWWIMEELQNDCAHVILSCLESAREL 789

Query: 135 SIKIIKIAADLSLWKLVEVAAIYLAPLYRQLCHSGDLEALDEEVVDMIRAASVRLSQEG 193
           SIK I++AA  S+WKLVE AA + AP+Y QL  SG+L+ LD+E+V++IR A+V+ SQ+G
Sbjct: 790 SIKTIELAASFSMWKLVEAAANHAAPIYHQLRDSGELDELDDELVNLIRTAAVQFSQQG 848