Jatropha Genome Database

JcCB0430181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430181.10 - phase: 0 /partial
         (317 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17000.1 | Symbols:  | unknown protein | chr4:9567046-9569913...   276   1e-74

>AT4G17000.1 | Symbols:  | unknown protein | chr4:9567046-9569913
           REVERSE
          Length = 674

 Score =  276 bits (707), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 190/267 (71%), Gaps = 14/267 (5%)

Query: 15  EINGDEFYEKIEAPKFVDLNAPDPYHHGDDCYWFCMRVGCDQKHEEEMDSETIYKNFLLR 74
           E N ++FYE IEAPKFVDL APD    GDD YWFC RVGCDQKHEE +DSE IYK F+LR
Sbjct: 11  EFNEEDFYETIEAPKFVDLTAPDHRPEGDDRYWFCSRVGCDQKHEEFLDSEAIYKKFVLR 70

Query: 75  VMAARSPNIRLRKALHKKDSSTDLKCPRTVPAKPSKPRVSRLALISSISKR----IVDPK 130
           VMAARSP++RLRKAL++KD S D KCP TVPAKPS+ RVS+LA+ISSI ++    I   +
Sbjct: 71  VMAARSPSVRLRKALYRKDFSVDPKCPNTVPAKPSRSRVSKLAMISSIPQKGNGNIRSKE 130

Query: 131 VKVKPLSKQNATPNAKAKQQPSII-----AKALTTPRAKKQLSNPEAFRSVRNPKTTATA 185
           VKV   +K N TP AKAK + S +      KALT    KKQ+ +P AFRSV+NP+     
Sbjct: 131 VKVVSTNK-NVTPKAKAKGKESAVISSVPQKALT--ERKKQMQSPAAFRSVQNPRNATIK 187

Query: 186 MPKNRVVAKTLVFDSPKKSVRTKSSLELNTPVKTLCAGMKKLEITSAKKQVLGYDRPLPC 245
           + +NRVVAK LVF SPKK V+ K S+EL++ VK LC GM+KLEI + K+  LG +  +  
Sbjct: 188 VSENRVVAKALVFQSPKKLVKLKRSVELSSSVKKLCNGMRKLEIDN-KRNGLGVNHKV-V 245

Query: 246 DTAASRKKLRGREVKSRLFDGLNLQKH 272
            +A+SR+ L+ REVKSR+FD L  QK 
Sbjct: 246 SSASSRRPLKTREVKSRVFDSLRSQKQ 272