Jatropha Genome Database

JcCB0429731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429731.10 - phase: 0 
         (123 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25770.2 | Symbols:  | unknown protein | chr2:10992987-109934...    66   4e-12
AT2G25770.1 | Symbols:  | unknown protein | chr2:10992987-109934...    66   4e-12
AT4G32870.1 | Symbols:  | unknown protein | chr4:15862168-158626...    64   2e-11

>AT2G25770.2 | Symbols:  | unknown protein | chr2:10992987-10993490
           FORWARD
          Length = 167

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 1   MPMVERCTDLVGDEGVPGYVRLVSGFMFPQE--DGERSWIKERLVCMDLTSYNYVYKMEA 58
           +P +  C  + G+ G  G +R  SGF       D    W KE+LV ++       Y++  
Sbjct: 40  LPTLATCHGVHGNNGEQGCIRFCSGFSIGSNGVDSAARWSKEKLVAVNPVERVMRYEIVE 99

Query: 59  SNVGLDGSVNTLKLVDYGDDSTLVNWSFQIDPLEGASEDNIM 100
           SN G +  V+T+K++  G+D  ++ WSF +DP+ G S +N++
Sbjct: 100 SNTGFESYVSTVKILPRGEDGCVIEWSFTVDPVRGLSLENLV 141


>AT2G25770.1 | Symbols:  | unknown protein | chr2:10992987-10993490
           FORWARD
          Length = 167

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 1   MPMVERCTDLVGDEGVPGYVRLVSGFMFPQE--DGERSWIKERLVCMDLTSYNYVYKMEA 58
           +P +  C  + G+ G  G +R  SGF       D    W KE+LV ++       Y++  
Sbjct: 40  LPTLATCHGVHGNNGEQGCIRFCSGFSIGSNGVDSAARWSKEKLVAVNPVERVMRYEIVE 99

Query: 59  SNVGLDGSVNTLKLVDYGDDSTLVNWSFQIDPLEGASEDNIM 100
           SN G +  V+T+K++  G+D  ++ WSF +DP+ G S +N++
Sbjct: 100 SNTGFESYVSTVKILPRGEDGCVIEWSFTVDPVRGLSLENLV 141


>AT4G32870.1 | Symbols:  | unknown protein | chr4:15862168-15862641
           FORWARD
          Length = 157

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 4/117 (3%)

Query: 1   MPMVERCTDLVGDEGVPGYVRLVSGFMFPQEDGERSWIKERLVCMDLTSYNYVYKMEASN 60
            P V+ C  + G +GVPG +R  S     +E+G R W KE+LV +D       Y++  +N
Sbjct: 40  FPSVDTCYRVQGTDGVPGLIRYCSTTK-TKEEGSR-WAKEKLVKIDPIGRCLSYEILENN 97

Query: 61  VGLDGSVNTLKL--VDYGDDSTLVNWSFQIDPLEGASEDNIMDYLGFLYKSCINRIE 115
           VG    V T+++  VD  D  + + WSF  DP++G  ++++  Y+ F  +   N++E
Sbjct: 98  VGFRSYVATVQVTPVDGEDQVSRIEWSFVADPVDGWKKEDLESYVDFCLQHMANKME 154