Jatropha Genome Database

JcCB0429541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429541.10 + phase: 0 /partial
         (298 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64570.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   185   3e-47

>AT1G64570.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Homeodomain-like
           (InterPro:IPR009057); Has 1675 Blast hits to 1424
           proteins in 225 species: Archae - 2; Bacteria - 192;
           Metazoa - 559; Fungi - 257; Plants - 67; Viruses - 46;
           Other Eukaryotes - 552 (source: NCBI BLink). |
           chr1:23978868-23983925 FORWARD
          Length = 1239

 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 136/201 (67%), Gaps = 7/201 (3%)

Query: 98  FVNGPIISILDAAPLNLVGRYMEEVFNAVREYRQRHLDSSCDTWNEREPLFHLPHFPSLT 157
            V G   S+LD   + L GRY+ +V +AV++YR+  ++S  DT ++R PLF LPH     
Sbjct: 370 LVTGSASSVLDV--VGLAGRYLVDVSDAVQDYRRCQVESGFDTSSQRVPLFTLPH----Q 423

Query: 158 ESNSEVSKRNTPPAISTGPTMPGQQLPKKTLAASIVENAKKQSVALVPKDISMLAQRFSS 217
           E   E+         S+  +  GQQ  KKTLAA++VE+A+KQSVALV KDI+ LA+RF  
Sbjct: 424 EVGGEIVNYPLSSPSSS-KSPSGQQQAKKTLAATLVESAQKQSVALVHKDIAKLAKRFMP 482

Query: 218 LFNPALFPHKPPPAAVANRVLFTDSEDELLALGIMEYNTDWKAIQQRFLPCKSKHQVVHI 277
           LF  +L+PHKPP AAVANRVLFTD+EDELLALGIMEYN+DWKAI+QRFLP K +HQ+   
Sbjct: 483 LFKVSLYPHKPPHAAVANRVLFTDAEDELLALGIMEYNSDWKAIKQRFLPSKGEHQIYVR 542

Query: 278 RVHNANTQPPLTSVKGDRRRK 298
           + +  +++ P   +K   R K
Sbjct: 543 QKNRRSSKAPENPIKAVLRMK 563