Jatropha Genome Database

JcCB0429441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429441.10 + phase: 0 
         (73 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968)...   140   2e-34
AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968)...   112   5e-26
AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative ...    77   3e-15
AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative ...    70   4e-13
AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775)...    69   7e-13

>AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968);
          ATP binding / ATPase/ DNA binding / DNA clamp loader/
          nucleoside-triphosphatase/ nucleotide binding |
          chr1:7615675-7618362 FORWARD
          Length = 339

 Score =  140 bits (352), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/68 (89%), Positives = 65/68 (95%)

Query: 1  MAPVLPNSQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSAL 60
          MAPVL +SQPWVEKYRPKQVKDVAHQEEVVRVLTNT++T DCPHMLFYGPPGTGKTT+AL
Sbjct: 1  MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61 AIARQLFG 68
          AIA QLFG
Sbjct: 61 AIAHQLFG 68


>AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968);
          ATP binding / ATPase/ DNA binding / DNA clamp loader/
          nucleoside-triphosphatase/ nucleotide binding |
          chr1:7615675-7618362 FORWARD
          Length = 327

 Score =  112 bits (280), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/68 (76%), Positives = 54/68 (79%), Gaps = 12/68 (17%)

Query: 1  MAPVLPNSQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSAL 60
          MAPVL +SQPWVEKYRPKQVKDVAHQEEV            CPHMLFYGPPGTGKTT+AL
Sbjct: 1  MAPVLQSSQPWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTAL 48

Query: 61 AIARQLFG 68
          AIA QLFG
Sbjct: 49 AIAHQLFG 56


>AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative |
          chr1:29112194-29114323 REVERSE
          Length = 369

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query: 3  PVLPNSQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAI 62
          P    + PWVEKYRP+ + DVA   +++  +         PH+L YGPPGTGKT++ LA+
Sbjct: 33 PPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAV 92

Query: 63 ARQLFG 68
          AR+L+G
Sbjct: 93 ARKLYG 98


>AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative |
          chr1:23422068-23423771 REVERSE
          Length = 333

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 8  SQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLF 67
          ++PWVEKYRP +V D+   E+ V  L      G+ P+++  GPPGTGKTTS LA+A +L 
Sbjct: 14 NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73

Query: 68 G 68
          G
Sbjct: 74 G 74


>AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775);
          DNA binding / nucleoside-triphosphatase/ nucleotide
          binding | chr5:9823831-9826869 FORWARD
          Length = 354

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLFG 68
          WV+KYRPK +  V   E++ + L   +   DCPH+LFYGP G+GK T  +A+ +Q++G
Sbjct: 3  WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60