Jatropha Genome Database
- JcCB0429031.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0429031.10 - phase: 2 /partial
(397 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46740.1 | Symbols: UBP21 | UBP21 (UBIQUITIN-SPECIFIC PROTEAS... 195 5e-50
AT4G17895.1 | Symbols: UBP20 | UBP20 (UBIQUITIN-SPECIFIC PROTEAS... 192 3e-49
AT5G57990.1 | Symbols: UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEAS... 165 4e-41
AT1G17110.1 | Symbols: UBP15 | UBP15 (UBIQUITIN-SPECIFIC PROTEAS... 114 9e-26
AT4G31670.1 | Symbols: UBP18 | UBP18 (UBIQUITIN-SPECIFIC PROTEAS... 109 3e-24
AT2G24640.1 | Symbols: UBP19 | UBP19 (UBIQUITIN-SPECIFIC PROTEAS... 109 4e-24
AT5G65450.1 | Symbols: UBP17 | UBP17 (UBIQUITIN-SPECIFIC PROTEAS... 107 9e-24
AT4G24560.1 | Symbols: UBP16 | UBP16 (UBIQUITIN-SPECIFIC PROTEAS... 96 5e-20
AT3G14400.1 | Symbols: UBP25 | UBP25 (UBIQUITIN-SPECIFIC PROTEAS... 93 4e-19
AT1G04860.1 | Symbols: UBP2, ATUBP2 | UBP2 (UBIQUITIN-SPECIFIC P... 75 6e-14
AT2G32780.1 | Symbols: UBP1, ATUBP1 | UBP1 (UBIQUITIN-SPECIFIC P... 74 2e-13
AT4G10570.1 | Symbols: UBP9 | UBP9 (UBIQUITIN-SPECIFIC PROTEASE ... 70 3e-12
AT4G10590.1 | Symbols: UBP10 | ubiquitin carboxyl-terminal hydro... 69 4e-12
AT4G10590.2 | Symbols: UBP10 | ubiquitin carboxyl-terminal hydro... 69 4e-12
AT1G32850.1 | Symbols: UBP11 | UBP11 (UBIQUITIN-SPECIFIC PROTEAS... 69 5e-12
AT5G10790.1 | Symbols: UBP22 | UBP22 (UBIQUITIN-SPECIFIC PROTEAS... 67 2e-11
AT2G22310.1 | Symbols: ATUBP4, UBP4 | ATUBP4 (ARABIDOPSIS THALIA... 65 1e-10
AT4G39910.1 | Symbols: ATUBP3, UBP3 | ATUBP3 (ARABIDOPSIS THALIA... 64 2e-10
AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | UBP5 (UBIQUITIN-SP... 56 4e-08
AT3G11910.1 | Symbols: UBP13 | UBP13 (UBIQUITIN-SPECIFIC PROTEAS... 52 7e-07
AT5G06600.3 | Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEAS... 51 1e-06
AT5G06600.1 | Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEAS... 51 1e-06
AT5G06600.2 | Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEAS... 51 1e-06
>AT5G46740.1 | Symbols: UBP21 | UBP21 (UBIQUITIN-SPECIFIC PROTEASE
21); ubiquitin thiolesterase/ ubiquitin-specific
protease | chr5:18965410-18968492 REVERSE
Length = 732
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 128/195 (65%), Gaps = 4/195 (2%)
Query: 204 PLAFSLPLPEPVATGVGAGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTG 263
PL S P TGVGAGL N GNTCFI ++LQCFTHTVPL+ +L+S + PC G
Sbjct: 146 PLQLSWWYPRIEPTGVGAGLYNSGNTCFIASVLQCFTHTVPLIDSLRSFMYGNPCNCGNE 205
Query: 264 GFCVVCALHDHIKLSLASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLER 323
FCV+ AL DHI+L+L SSG I+ DNL SS F QEDAHEFLQ L+KLER
Sbjct: 206 KFCVMQALRDHIELALRSSGYGINIDRFRDNLTYFSSDFMINHQEDAHEFLQSFLDKLER 265
Query: 324 CCLNDEISY----PQDDNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETL 379
CCL+ + QD NIV+ VFGG L+S L CCNC S+ +EP + SLEIEDV TL
Sbjct: 266 CCLDPKNQLGSVSSQDLNIVDNVFGGGLMSTLCCCNCNSVSNTFEPSLGWSLEIEDVNTL 325
Query: 380 QNALESFTKVEKIEN 394
ALESFT VEK+E+
Sbjct: 326 WKALESFTCVEKLED 340
>AT4G17895.1 | Symbols: UBP20 | UBP20 (UBIQUITIN-SPECIFIC PROTEASE
20); ubiquitin thiolesterase/ ubiquitin-specific
protease | chr4:9939914-9942698 FORWARD
Length = 695
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/182 (56%), Positives = 128/182 (70%), Gaps = 3/182 (1%)
Query: 212 PEPVATGVGAGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCAL 271
PEPV TGVGAGL NLGN+CF+N++ QCFTHTVPL+++L S + PC G FCV+ A+
Sbjct: 168 PEPV-TGVGAGLWNLGNSCFLNSVFQCFTHTVPLIESLLSFRYEVPCHCGNEFFCVIRAI 226
Query: 272 HDHIKLSLASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEIS 331
HI+ +L I+P DNLN S F+RYQQEDAHEFLQ LEKLE C +D S
Sbjct: 227 RYHIEAALRPERCPIAPYFFFDNLNYFSPDFQRYQQEDAHEFLQAFLEKLE-ICGSDRTS 285
Query: 332 YPQDDNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETLQNALESFTKVEK 391
+ + D + VF GRLIS L+CCNC S+ YE + LSLEIEDV+TL +ALESFT+VEK
Sbjct: 286 F-RGDITSQDVFSGRLISGLRCCNCDYVSETYEKSVGLSLEIEDVDTLGSALESFTRVEK 344
Query: 392 IE 393
++
Sbjct: 345 LD 346
>AT5G57990.1 | Symbols: UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE
23); ubiquitin thiolesterase/ ubiquitin-specific
protease | chr5:23470218-23473997 REVERSE
Length = 859
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 118/180 (65%), Gaps = 6/180 (3%)
Query: 219 VGAGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLS 278
+GAGL NLGNTCF+N++LQC T+T PL LQ+ H + C GFC +CA+ H++ +
Sbjct: 105 IGAGLQNLGNTCFLNSVLQCLTYTEPLAATLQTAAHQKYCH--VAGFCALCAIQKHVRTA 162
Query: 279 LASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEISYPQDD-- 336
++G+I++P ++V NL IS FR +QEDAHE++ LLE + +C L + D
Sbjct: 163 RQANGRILAPKDLVSNLRCISRNFRNCRQEDAHEYMINLLECMHKCSLPSGVPSESSDAY 222
Query: 337 --NIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETLQNALESFTKVEKIEN 394
++V ++FGG L S++KC C CS+K++P +DLSL+I ++LQ AL FT VE ++N
Sbjct: 223 RRSLVHKIFGGSLRSQVKCEQCSHCSNKFDPFLDLSLDISKADSLQRALSRFTAVELLDN 282
>AT1G17110.1 | Symbols: UBP15 | UBP15 (UBIQUITIN-SPECIFIC PROTEASE
15); ubiquitin-specific protease | chr1:5845816-5849889
REVERSE
Length = 924
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 10/179 (5%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLAS 281
GL N GN+C+ NA+LQ T T PLV L +H R C +C++C L H+ + L
Sbjct: 439 GLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSC--SGKDWCLMCELEQHVMM-LRE 495
Query: 282 SGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCL---NDEISYP---QD 335
SG +S ++ ++ +I+ QEDAHEFL+ L+ ++ CL E Q+
Sbjct: 496 SGGPLSASRILSHMRSINCQIGDGSQEDAHEFLRLLVASMQSICLERLGGETKVDPRLQE 555
Query: 336 DNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIED-VETLQNALESFTKVEKIE 393
+V+ +FGGRL SK+KC C S++YE ++DL+LEI VE+LQ+AL FT+ E ++
Sbjct: 556 TTLVQHMFGGRLRSKVKCLRCDHESERYENIMDLTLEIYGWVESLQDALTQFTRPEDLD 614
>AT4G31670.1 | Symbols: UBP18 | UBP18 (UBIQUITIN-SPECIFIC PROTEASE
18); cysteine-type endopeptidase/ ubiquitin
thiolesterase | chr4:15336007-15339506 REVERSE
Length = 631
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLAS 281
GL N GN+CF N ILQC + T PLV L H R C R +C +C H++ + +
Sbjct: 169 GLMNCGNSCFANVILQCLSWTRPLVAYLLEKGHKRECMRND--WCFLCEFQTHVERA-SQ 225
Query: 282 SGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLN----DEISYP--QD 335
S SP+ ++ L NI +QEDAHEF++ ++ ++ CL+ ++I P Q+
Sbjct: 226 SRFPFSPMNIISRLTNIGGTLGYGRQEDAHEFMRYAIDMMQSVCLDEFGGEKIVPPRSQE 285
Query: 336 DNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIE-DVETLQNALESFTKVE 390
+++ +FGG L S+++C C SD+YE ++DL +E+ D +L+ L+ FT E
Sbjct: 286 TTLIQYIFGGLLQSQVQCTVCNHVSDQYENMMDLIVEMHGDAGSLEECLDQFTAEE 341
>AT2G24640.1 | Symbols: UBP19 | UBP19 (UBIQUITIN-SPECIFIC PROTEASE
19); cysteine-type endopeptidase/ ubiquitin
thiolesterase | chr2:10475613-10479341 REVERSE
Length = 672
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 103/181 (56%), Gaps = 12/181 (6%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLAS 281
GL+N GN+CF N +LQC + T PLV L H R C+R +C +C +H L A+
Sbjct: 175 GLTNCGNSCFANVVLQCLSWTRPLVAYLLERGHKRECRRND--WCFLCEFENH--LDRAN 230
Query: 282 SGKI-ISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLND---EISYP---Q 334
+ SP+ ++ L NI +QEDAHE ++ ++ ++ CL++ E P Q
Sbjct: 231 YSRFPFSPMNIISRLPNIGGNLGYGRQEDAHELMRFAIDMMQSVCLDEFGGEKVVPPRAQ 290
Query: 335 DDNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIE-DVETLQNALESFTKVEKIE 393
+ +++ +FGG L S+++C C + SD+YE ++DL++EI D +L+ L+ FT E ++
Sbjct: 291 ETTLIQYIFGGLLQSQVQCTACSNVSDQYENMMDLTVEIHGDAVSLEECLDQFTAKEWLQ 350
Query: 394 N 394
Sbjct: 351 G 351
>AT5G65450.1 | Symbols: UBP17 | UBP17 (UBIQUITIN-SPECIFIC PROTEASE
17); cysteine-type endopeptidase/ ubiquitin
thiolesterase/ zinc ion binding | chr5:26157863-26161096
FORWARD
Length = 731
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 101/177 (57%), Gaps = 7/177 (3%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLAS 281
GL NLGN+C+ NA+LQC T PL+ L H + C++ + +C VC +H+ L
Sbjct: 330 GLVNLGNSCYANAVLQCLAFTRPLISYLIRGLHSKTCRKKS--WCFVCEF-EHLILKARG 386
Query: 282 SGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEIS---YPQDDNI 338
+SP++++ L I ++EDAHEFL+C ++ ++ L + + + ++ +
Sbjct: 387 GESPLSPIKILSKLQKIGKHLGPGKEEDAHEFLRCAVDTMQSVFLKEAPAAGPFAEETTL 446
Query: 339 VERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIE-DVETLQNALESFTKVEKIEN 394
V FGG L SK+KC C S++ E ++DL++EI+ D+ +L+ AL FT E ++
Sbjct: 447 VGLTFGGYLHSKIKCMACLHKSERPELMMDLTVEIDGDIGSLEEALAQFTAYEVLDG 503
>AT4G24560.1 | Symbols: UBP16 | UBP16 (UBIQUITIN-SPECIFIC PROTEASE
16); ubiquitin thiolesterase/ ubiquitin-specific
protease/ zinc ion binding | chr4:12679493-12684528
REVERSE
Length = 1008
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLAS 281
GL N+GN+CF N + QC T PL H R C + C C + + +
Sbjct: 543 GLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSRACTKKEQ--CFTCGF-EKLVVKAKE 599
Query: 282 SGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLN------DEISYPQD 335
+SP ++ L NI ++EDAHEFL+ +++ ++ C+ + S +D
Sbjct: 600 EKSPLSPNGLLSQLQNIGIFLGNGKEEDAHEFLRFVVDTMQSVCIKASEYDMTKSSKLED 659
Query: 336 DNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIE-DVETLQNALESFTKVEKIEN 394
++ FGG L SK+KC C S+ E ++DL++EI+ D+ TL +AL FT+ E ++
Sbjct: 660 TTLIGLTFGGYLRSKIKCMKCQVKSELREKMMDLTVEIDGDISTLDDALRRFTRTEILDG 719
>AT3G14400.1 | Symbols: UBP25 | UBP25 (UBIQUITIN-SPECIFIC PROTEASE
25); ubiquitin thiolesterase/ ubiquitin-specific
protease | chr3:4811953-4815210 REVERSE
Length = 661
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 12/191 (6%)
Query: 211 LPEPVATGVGAGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGF----C 266
L + G GL NLGNTC++N++LQC T T PL + H C G C
Sbjct: 14 LSQKRRNGPPLGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSSHCDTYVDGERKRDC 73
Query: 267 VVCALHDHIKLSLASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLE------- 319
C + I SL+ +P ++ L + F+ +QEDAHEFL+ +++
Sbjct: 74 PFCIVEKRIARSLSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHEFLRYVIDACHNTSL 133
Query: 320 KLERCCLNDEISYPQDDNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETL 379
+L++ N + +++V+ +FGG L S++KC +CG S+K + ++D+SLEI ++
Sbjct: 134 RLKKLRYNGNEPF-NGNSVVKEIFGGALQSQVKCLSCGAESNKADEIMDISLEILQSSSV 192
Query: 380 QNALESFTKVE 390
+ +L+ F + E
Sbjct: 193 KESLQKFFQSE 203
>AT1G04860.1 | Symbols: UBP2, ATUBP2 | UBP2 (UBIQUITIN-SPECIFIC
PROTEASE 2); ubiquitin-specific protease |
chr1:1369306-1372290 REVERSE
Length = 961
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRP---CQRGTG-GFCVVCALHDHIKL 277
GL NLGNTCF N+I+Q L S + LR + G+G G + +L
Sbjct: 232 GLVNLGNTCFFNSIMQ----------NLLSLDRLRDHFLKENGSGVGGPLASSLRKLFTE 281
Query: 278 SLASSG--KIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKL--ERCCLNDEISYP 333
+ +G +I+P + + + FR Y Q D+HE L+CLL+ L E L +
Sbjct: 282 TKPEAGLKSVINPRAFFGSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKRGVS 341
Query: 334 QDD----NIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSL 371
+D ++E VFGG S + C CG S YEP +DLSL
Sbjct: 342 DNDEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
>AT2G32780.1 | Symbols: UBP1, ATUBP1 | UBP1 (UBIQUITIN-SPECIFIC
PROTEASE 1); ubiquitin thiolesterase/ ubiquitin-specific
protease/ zinc ion binding | chr2:13898431-13901870
REVERSE
Length = 1083
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 22/166 (13%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLAS 281
GL NLGNTCF N+++Q L+ Q H G +V +L + S +
Sbjct: 203 GLVNLGNTCFFNSVMQN------LLSLDQLREHFLKEDLSVSG-PLVSSLKELFAESNSE 255
Query: 282 SGKI---ISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKL--ERCCL---------N 327
+ I+P ++ ++ + + FR YQQ D+HE L+CLL+ L E L N
Sbjct: 256 ASVFRNEINPRDLFFSVCSQAPQFRGYQQHDSHELLRCLLDGLSIEESSLRKKLGVSDSN 315
Query: 328 DEISYPQDDNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEI 373
D +Y Q +++ VFGG + S + C CG S YEP +DLSL +
Sbjct: 316 DSSTY-QKPTLIDSVFGGEISSTVSCLECGHFSKVYEPFMDLSLPV 360
>AT4G10570.1 | Symbols: UBP9 | UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9);
cysteine-type endopeptidase/ ubiquitin thiolesterase |
chr4:6523657-6528058 REVERSE
Length = 923
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 83/200 (41%), Gaps = 36/200 (18%)
Query: 218 GVGAGLSNLGNTCFINAILQCFTHTVPLVKAL-----QSCNHLRPCQRGTGGFC--VVCA 270
G AGLSNLGNTCF+N+ LQC HT P+V+ N P G C + A
Sbjct: 301 GGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPL-----GMCGELAIA 355
Query: 271 LHDHIKLSLASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLE-------KLER 323
D +K +S ++P L + F Y Q D+ E L LL+ K++R
Sbjct: 356 FGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKR 415
Query: 324 ---CCLNDEISYPQD--------------DNIVERVFGGRLISKLKCCNCGDCSDKYEPL 366
L D S P D D+++ V G+ S L C CG S ++P
Sbjct: 416 KPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPF 475
Query: 367 IDLSLEIEDVETLQNALESF 386
+ LS+ + T + F
Sbjct: 476 MYLSVPLPSTLTRSMTITVF 495
>AT4G10590.1 | Symbols: UBP10 | ubiquitin carboxyl-terminal
hydrolase family protein | chr4:6538919-6543272 REVERSE
Length = 910
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 83/200 (41%), Gaps = 36/200 (18%)
Query: 218 GVGAGLSNLGNTCFINAILQCFTHTVPLVKAL-----QSCNHLRPCQRGTGGFC--VVCA 270
G AGLSNLGNTCF+N+ LQC HT P+V+ N P G C + A
Sbjct: 300 GGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPL-----GMCGELAIA 354
Query: 271 LHDHIKLSLASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLE-------KLER 323
D +K +S ++P L + F Y Q D+ E L LL+ K++R
Sbjct: 355 FGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKR 414
Query: 324 ---CCLNDEISYPQD--------------DNIVERVFGGRLISKLKCCNCGDCSDKYEPL 366
L D S P D D+++ V G+ S L C CG S ++P
Sbjct: 415 KPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISITFDPF 474
Query: 367 IDLSLEIEDVETLQNALESF 386
+ LS+ + T + F
Sbjct: 475 MYLSVPLPSTLTRSMTVTVF 494
>AT4G10590.2 | Symbols: UBP10 | ubiquitin carboxyl-terminal
hydrolase family protein | chr4:6538919-6543272 REVERSE
Length = 910
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 83/200 (41%), Gaps = 36/200 (18%)
Query: 218 GVGAGLSNLGNTCFINAILQCFTHTVPLVKAL-----QSCNHLRPCQRGTGGFC--VVCA 270
G AGLSNLGNTCF+N+ LQC HT P+V+ N P G C + A
Sbjct: 300 GGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPL-----GMCGELAIA 354
Query: 271 LHDHIKLSLASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLE-------KLER 323
D +K +S ++P L + F Y Q D+ E L LL+ K++R
Sbjct: 355 FGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKR 414
Query: 324 ---CCLNDEISYPQD--------------DNIVERVFGGRLISKLKCCNCGDCSDKYEPL 366
L D S P D D+++ V G+ S L C CG S ++P
Sbjct: 415 KPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISITFDPF 474
Query: 367 IDLSLEIEDVETLQNALESF 386
+ LS+ + T + F
Sbjct: 475 MYLSVPLPSTLTRSMTVTVF 494
>AT1G32850.1 | Symbols: UBP11 | UBP11 (UBIQUITIN-SPECIFIC PROTEASE
11); cysteine-type endopeptidase/ ubiquitin
thiolesterase | chr1:11902629-11906900 FORWARD
Length = 892
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 218 GVGAGLSNLGNTCFINAILQCFTHTVPLVKA-LQSCNHLRPCQRGTGGFCVVCALHDHIK 276
G+G GL NLGNTCF+N+ LQC HT P+V+ LQ + G + +
Sbjct: 299 GLG-GLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIAFGELL 357
Query: 277 LSLASSGK-IISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLE-------KLERCCL-- 326
L SSG+ ++P L + F Y Q D+ E L LL+ K++R
Sbjct: 358 RKLWSSGQNTVAPRAFKTKLARFAPQFSGYNQHDSQEMLAFLLDGLHEDLNKVKRKPYIE 417
Query: 327 --------NDEIS-------YPQDDNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSL 371
+DE++ ++D+++ VF G+ S L C +CG S ++P + LSL
Sbjct: 418 AKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLSL 477
Query: 372 EIEDVETLQNALESF 386
+ T + F
Sbjct: 478 PLPSSRTRSMTVTVF 492
>AT5G10790.1 | Symbols: UBP22 | UBP22 (UBIQUITIN-SPECIFIC PROTEASE
22); ubiquitin thiolesterase/ ubiquitin-specific
protease/ zinc ion binding | chr5:3410638-3412559
FORWARD
Length = 557
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 5/166 (3%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRP-CQRGTGG-FCVVCALHDHIKLSL 279
GL+NLG+TCF+NA+LQ H PL S H R C R T G C+ C L
Sbjct: 178 GLNNLGSTCFMNAVLQALVHAPPLRNFWLSGQHNRDLCPRRTMGLLCLPCDLDVIFSAMF 237
Query: 280 ASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEISYPQDDN-- 337
+ SP ++ + S+ Y+Q+D+HEF LL+++ + Y ++
Sbjct: 238 SGDRTPYSPAHLLYSWWQHSTNLATYEQQDSHEFFISLLDRIHENEGKSKCLYQDNEECQ 297
Query: 338 -IVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETLQNA 382
I + F G L S + C CG S Y+P ID+SL ++ + A
Sbjct: 298 CITHKAFSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFSPA 343
>AT2G22310.1 | Symbols: ATUBP4, UBP4 | ATUBP4 (ARABIDOPSIS THALIANA
UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific
protease | chr2:9476733-9478825 REVERSE
Length = 365
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 30/203 (14%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLAS 281
G N GNTC+ N++LQ P + L + L I
Sbjct: 24 GFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEENLLTCLADLFSQISSQKKK 83
Query: 282 SGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEISYPQDDN---- 337
+G +I+P V L + FR Y +DAHEFL LL +L L E + DN
Sbjct: 84 TG-VIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVEI-LEKETQATKADNETSS 141
Query: 338 ------------------------IVERVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEI 373
V ++F G L ++ +C C + + E +DLSL+I
Sbjct: 142 SPEKIANVLKAPLANGVHKEPIVTWVHKIFQGILTNETRCLRCETVTARDETFLDLSLDI 201
Query: 374 EDVETLQNALESFTKVEKIENLD 396
E ++ + L++F+ E + D
Sbjct: 202 EQNSSITSCLKNFSSTETLHAED 224
>AT4G39910.1 | Symbols: ATUBP3, UBP3 | ATUBP3 (ARABIDOPSIS THALIANA
UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific
protease | chr4:18511858-18514139 REVERSE
Length = 371
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 33/207 (15%)
Query: 222 GLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCA--LHDHIKLSL 279
G N GNTC+ N++LQ VP + L + C L I
Sbjct: 24 GFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLMTCLADLFSQISSQK 83
Query: 280 ASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLL-------EKLERCC------- 325
+G +I+P V L + FR Y +DAHEFL LL EK +
Sbjct: 84 KKTG-VIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNEVVDILEKEAKATKTEHETS 142
Query: 326 -------LNDEISYPQDDNIVER---------VFGGRLISKLKCCNCGDCSDKYEPLIDL 369
+ + + PQ + +V + +F G L ++ +C C + + E +DL
Sbjct: 143 SSSSPEKIANGLKVPQANGVVHKEPIVTWVHNIFQGILTNETRCLRCETVTARDETFLDL 202
Query: 370 SLEIEDVETLQNALESFTKVEKIENLD 396
SL+IE ++ + L++F+ E + D
Sbjct: 203 SLDIEQNSSITSCLKNFSSTETLHAED 229
>AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | UBP5
(UBIQUITIN-SPECIFIC PROTEASE 5); ubiquitin-specific
protease | chr2:17076714-17082192 REVERSE
Length = 924
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 26/185 (14%)
Query: 216 ATGVGAGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFC--VVCALHD 273
+T GL NLGNTCF+N+ +QC HT Q H + G + A D
Sbjct: 312 STAGLTGLLNLGNTCFMNSAIQCLVHTPEFASYFQEDYHQEINWQNPLGMVGELALAFGD 371
Query: 274 HIKLSLASSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLL----EKLERCC---- 325
++ A I+P L + F Y Q D+ E L LL E L R
Sbjct: 372 LLRKLWAPGRTPIAPRPFKAKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPY 431
Query: 326 -------------LNDEI---SYPQDDNIVERVFGGRLISKLKCCNCGDCSDKYEPLIDL 369
+ DE ++D+I+ V G+ S L C C S ++P + L
Sbjct: 432 INSRDADGRPDEEVADEFWKNHIARNDSIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYL 491
Query: 370 SLEIE 374
SL ++
Sbjct: 492 SLPLQ 496
>AT3G11910.1 | Symbols: UBP13 | UBP13 (UBIQUITIN-SPECIFIC PROTEASE
13); ubiquitin thiolesterase/ ubiquitin-specific
protease | chr3:3761758-3770290 REVERSE
Length = 1115
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 221 AGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLA 280
GL N G TC++N++LQ H +P + ++ H+ + + AL + L
Sbjct: 198 VGLKNQGATCYMNSLLQTLYH-IPYFR--KAVYHMPTTENDAPTASIPLALQS-LFYKLQ 253
Query: 281 SSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEISYPQDDNIVE 340
+ ++ E+ + + + Q D E + L EKLE D++ + ++
Sbjct: 254 YNDTSVATKELTKSFG--WDTYDSFMQHDVQELNRVLCEKLE-----DKMKGTVVEGTIQ 306
Query: 341 RVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETLQNALESFTKVEKIE 393
++F G ++ ++C N S + E DL L+++ + + + + + +VE++E
Sbjct: 307 KLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLE 359
>AT5G06600.3 | Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE
12); ubiquitin thiolesterase/ ubiquitin-specific
protease | chr5:2020682-2027834 REVERSE
Length = 985
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 221 AGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLA 280
GL N G TC++N++LQ H +P + ++ H+ + + AL + L
Sbjct: 199 VGLKNQGATCYMNSLLQTLYH-IPYFR--KAVYHMPTTENDAPTASIPLALQS-LFYKLQ 254
Query: 281 SSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEISYPQDDNIVE 340
+ ++ E+ + + + Q D E + L EKLE D++ + ++
Sbjct: 255 YNDTSVATKELTKSFG--WDTYDSFMQHDVQELNRVLCEKLE-----DKMKGTVVEGTIQ 307
Query: 341 RVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETLQNALESFTKVEKIE 393
++F G ++ ++C N S + E DL L+++ + + + + + +VE++E
Sbjct: 308 QLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLE 360
>AT5G06600.1 | Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE
12); ubiquitin thiolesterase/ ubiquitin-specific
protease | chr5:2019545-2027834 REVERSE
Length = 1116
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 221 AGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLA 280
GL N G TC++N++LQ H +P + ++ H+ + + AL + L
Sbjct: 199 VGLKNQGATCYMNSLLQTLYH-IPYFR--KAVYHMPTTENDAPTASIPLALQS-LFYKLQ 254
Query: 281 SSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEISYPQDDNIVE 340
+ ++ E+ + + + Q D E + L EKLE D++ + ++
Sbjct: 255 YNDTSVATKELTKSFG--WDTYDSFMQHDVQELNRVLCEKLE-----DKMKGTVVEGTIQ 307
Query: 341 RVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETLQNALESFTKVEKIE 393
++F G ++ ++C N S + E DL L+++ + + + + + +VE++E
Sbjct: 308 QLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLE 360
>AT5G06600.2 | Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE
12); double-stranded DNA binding / ubiquitin
thiolesterase/ ubiquitin-specific protease |
chr5:2019545-2027834 REVERSE
Length = 1115
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 221 AGLSNLGNTCFINAILQCFTHTVPLVKALQSCNHLRPCQRGTGGFCVVCALHDHIKLSLA 280
GL N G TC++N++LQ H +P + ++ H+ + + AL + L
Sbjct: 198 VGLKNQGATCYMNSLLQTLYH-IPYFR--KAVYHMPTTENDAPTASIPLALQS-LFYKLQ 253
Query: 281 SSGKIISPLEVVDNLNNISSCFRRYQQEDAHEFLQCLLEKLERCCLNDEISYPQDDNIVE 340
+ ++ E+ + + + Q D E + L EKLE D++ + ++
Sbjct: 254 YNDTSVATKELTKSFG--WDTYDSFMQHDVQELNRVLCEKLE-----DKMKGTVVEGTIQ 306
Query: 341 RVFGGRLISKLKCCNCGDCSDKYEPLIDLSLEIEDVETLQNALESFTKVEKIE 393
++F G ++ ++C N S + E DL L+++ + + + + + +VE++E
Sbjct: 307 QLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLE 359