Jatropha Genome Database

JcCB0428571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428571.10 + phase: 0 /partial
         (164 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RDR1 (RNA-DEPENDENT RNA P...   189   7e-49
AT4G11130.1 | Symbols: RDR2, SMD1 | RDR2 (RNA-DEPENDENT RNA POLY...    61   3e-10

>AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RDR1 (RNA-DEPENDENT RNA
           POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid
           binding | chr1:5094317-5097817 REVERSE
          Length = 1107

 Score =  189 bits (480), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 1/165 (0%)

Query: 1   MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
           MGKTI V+GFP  V+ +EVKK LE  +G GTV+A+K+R+ K GG R YAIVQF + R   
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61  LII-SLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
           LII +  +RL YG SYLKA  + +DIVP PR  LH++  + + FGC++S +KF  LW+  
Sbjct: 61  LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
           +V V+FG G+RKL F  S  Q DY+L+LSYEN+WQI+LH P+GRS
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRS 165


>AT4G11130.1 | Symbols: RDR2, SMD1 | RDR2 (RNA-DEPENDENT RNA
           POLYMERASE 2); RNA-directed RNA polymerase |
           chr4:6780522-6784390 FORWARD
          Length = 1133

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 4   TIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETK-NGGQRKYAIVQFQT--ARDAE 60
           T+ +   P  +  DE+ + LE H G+ TVFA++I  T+ N   R +A VQF T   +   
Sbjct: 11  TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 61  LIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEK-FSVLWTGT 119
            ++S   +L + T  L+      DI+P P      +D I L  G   S EK F  L    
Sbjct: 71  QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRG 162
            V        R+++F++      YK+++ +E++ +    C  G
Sbjct: 131 GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNG 173