Jatropha Genome Database

JcCB0428011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428011.10 + phase: 1 /partial
         (229 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22640.1 | Symbols: PAP85 | PAP85; nutrient reservoir | chr3:...    63   1e-10

>AT3G22640.1 | Symbols: PAP85 | PAP85; nutrient reservoir |
           chr3:8011902-8013883 REVERSE
          Length = 486

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 49/195 (25%)

Query: 1   ISMIIEEKRQSFNVQRGDVLRIRAGTPLYLINRDEKEKLYVVSVMVPVNIPGEFEIFSAS 60
           I  + ++ ++SF++ +GDV+RI +G   ++ N ++   L +  + VPVN PG ++ +  +
Sbjct: 135 IEFVTDKTKESFHITKGDVVRIPSGVTNFITNTNQTVPLRLAQITVPVNNPGNYKDYFPA 194

Query: 61  GTEDSESFYEAFSWELLEAALKPPGEQIQAMSHR--EEGGGV------------------ 100
            ++  +S++  F+ E+L  +   P E +  +  R  E G G+                  
Sbjct: 195 ASQFQQSYFNGFTKEVLSTSFNVPEELLGRLVTRSKEIGQGIIRRISPDQIKELAEHATS 254

Query: 101 --------------------W-PFGTESIGPISILKNPVFRNNYGQLFEVGSRDFKQQLR 139
                               W PF   +I       +P++ N++G   E   +++  QL+
Sbjct: 255 PSNKHKAKKEKEEDKDLRTLWTPFNLFAI-------DPIYSNDFGHFHEAHPKNYN-QLQ 306

Query: 140 DLDLSVSVANISRAS 154
           DL ++ + AN+++ S
Sbjct: 307 DLHIAAAWANMTQGS 321