Jatropha Genome Database

JcCB0426941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0426941.10 + phase: 0 
         (452 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26760.2 | Symbols:  | unknown protein | chr5:9403869-9407170...   217   2e-56
AT5G26760.1 | Symbols:  | unknown protein | chr5:9403869-9405704...    60   4e-09

>AT5G26760.2 | Symbols:  | unknown protein | chr5:9403869-9407170
           REVERSE
          Length = 735

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/257 (46%), Positives = 168/257 (65%), Gaps = 16/257 (6%)

Query: 1   MAKD-QSISVKDTVHKLQLSLLEGIKNEDQLFTAGSLMSRSDYEDVVTERSIANLCGYPL 59
           MAKD ++I++ D VHKLQL +LE   +++QLF A  LMSRSDYEDVVTER+IA LCGY L
Sbjct: 1   MAKDNEAIAINDAVHKLQLYMLENTTDQNQLFAARKLMSRSDYEDVVTERAIAKLCGYTL 60

Query: 60  CNNSLPLDRPYKGRYRISLKEHKVYDLHETYMYCSSSCIVNSRAFAGSLQEERCSVLNPM 119
           C   LP D   +G+YRISLK+HKVYDL ET  +CS+ C+++S+ F+GSLQE R    + +
Sbjct: 61  CQRFLPSDVSRRGKYRISLKDHKVYDLQETSKFCSAGCLIDSKTFSGSLQEARTLEFDSV 120

Query: 120 KLDEILRMFNNLSLDSKNLVE-NGDLGLSNLKIQEKIESNVGEVSLEEWIGPSNAIEGYV 178
           KL+EIL +F + SL+ K  ++ N DL LS L I+E       E+SLE+W+GPSNA+EGYV
Sbjct: 121 KLNEILDLFGD-SLEVKGSLDVNKDLDLSKLMIKENFGVRGEELSLEKWMGPSNAVEGYV 179

Query: 179 PQRDRDFKGSSFKNPKEASKAISTKPVNKQECFFNDMDFMSTIITKDEYSISKAPSGSIS 238
           P          F   K ++ + +T   N+++   ++MDF ST+I  D  S+SK P  +  
Sbjct: 180 P----------FDRSKSSNDSKATTQSNQEK---HEMDFTSTVIMPDVNSVSKLPPQTKQ 226

Query: 239 TGSDMKLQEQRGKETHK 255
             + ++  + +GK   K
Sbjct: 227 ASTVVESVDGKGKTVLK 243



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 107/217 (49%), Gaps = 32/217 (14%)

Query: 212 FNDMDFMSTIITKD----EYSISKAPSGSISTGSDMKL----QEQRGKETHKGSEAQSSS 263
           F++M   S+ +  D    EYS+SK P  S+      KL    Q   GK T  GS + S++
Sbjct: 303 FDEMGLASSAMMSDGYGVEYSVSKQPQCSMEDSLSCKLKGDLQTLDGKNTLSGSSSGSNT 362

Query: 264 PGKHAFVKTXXXXXXXXXXQIIKEELSDKDLLSA---SNYSQTGSSMNNAEPEEKSGAKQ 320
            G                    K E S K ++S    +N  + G  +  AE  E+  A+ 
Sbjct: 363 KGSKT-----------------KPEKSRKKIISVEYHANSYEDGEEILAAESYERHKAQD 405

Query: 321 AANLSESMLKPSLKPSGAKKSVHSVTWADEKFDNAKSRNLCEVREMEDTKSGLEILDSLE 380
             + SE + K  LK SG+KK   SVTWAD+   N    +LCEVR   D  +G  +  +  
Sbjct: 406 VCSSSEIVTKSCLKISGSKKLSRSVTWADQ---NDGRGDLCEVRN-NDNAAGPSLSSNDI 461

Query: 381 NNNDNMLRFESAEACAIALSQAAEAVASGDADVNDAS 417
            + +++ R   AEA A ALSQAAEAV+SG++D +DA+
Sbjct: 462 EDVNSLSRLALAEALATALSQAAEAVSSGNSDASDAT 498


>AT5G26760.1 | Symbols:  | unknown protein | chr5:9403869-9405704
           REVERSE
          Length = 430

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 99/199 (49%), Gaps = 28/199 (14%)

Query: 226 EYSISKAPSGSISTGSDMKL----QEQRGKETHKGSEAQSSSPGKHAFVKTXXXXXXXXX 281
           EYS+SK P  S+      KL    Q   GK T  GS + S++ G                
Sbjct: 16  EYSVSKQPQCSMEDSLSCKLKGDLQTLDGKNTLSGSSSGSNTKGSKT------------- 62

Query: 282 XQIIKEELSDKDLLSA---SNYSQTGSSMNNAEPEEKSGAKQAANLSESMLKPSLKPSGA 338
               K E S K ++S    +N  + G  +  AE  E+  A+   + SE + K  LK SG+
Sbjct: 63  ----KPEKSRKKIISVEYHANSYEDGEEILAAESYERHKAQDVCSSSEIVTKSCLKISGS 118

Query: 339 KKSVHSVTWADEKFDNAKSRNLCEVREMEDTKSGLEILDSLENNNDNMLRFESAEACAIA 398
           KK   SVTWAD+   N    +LCEVR   D  +G  +  +   + +++ R   AEA A A
Sbjct: 119 KKLSRSVTWADQ---NDGRGDLCEVRN-NDNAAGPSLSSNDIEDVNSLSRLALAEALATA 174

Query: 399 LSQAAEAVASGDADVNDAS 417
           LSQAAEAV+SG++D +DA+
Sbjct: 175 LSQAAEAVSSGNSDASDAT 193