Jatropha Genome Database

JcCB0426111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0426111.10 - phase: 0 /partial
         (118 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64860.1 | Symbols: DPE1 | DPE1 (DISPROPORTIONATING ENZYME); ...   190   2e-49

>AT5G64860.1 | Symbols: DPE1 | DPE1 (DISPROPORTIONATING ENZYME);
           4-alpha-glucanotransferase/ catalytic/ cation binding |
           chr5:25925373-25928788 REVERSE
          Length = 576

 Score =  190 bits (482), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/117 (76%), Positives = 99/117 (84%)

Query: 2   GPGKSLFDAISGAFGNIRIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDADNPHLP 61
           GPGKSLFDAIS   G I+IIAEDLGVIT+DVV+LRKSIGAPGMAVLQF FG  ADNPHLP
Sbjct: 399 GPGKSLFDAISKGVGKIKIIAEDLGVITKDVVELRKSIGAPGMAVLQFAFGGGADNPHLP 458

Query: 62  HNHEANQVVYTGTHDNDTTRGWWDNLKKREKSNVLKYLSITEEDDMPWALIQAAVAS 118
           HNHE NQVVY+GTHDNDT RGWWD L + EKS  +KYLSI  EDD+ W++IQAA +S
Sbjct: 459 HNHEVNQVVYSGTHDNDTIRGWWDTLDQEEKSKAMKYLSIAGEDDISWSVIQAAFSS 515