Jatropha Genome Database

JcCB0425521.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0425521.10 + phase: 0 /partial
         (418 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10040.1 | Symbols:  | transcription factor | chr3:3096580-30...   241   7e-64
AT1G76870.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   180   2e-45
AT1G21200.1 | Symbols:  | transcription factor | chr1:7421483-74...   177   9e-45

>AT3G10040.1 | Symbols:  | transcription factor |
           chr3:3096580-3097875 REVERSE
          Length = 431

 Score =  241 bits (615), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 141/236 (59%), Positives = 162/236 (68%), Gaps = 36/236 (15%)

Query: 4   TKPKPQSPPS----DEDEHFIG--------DDVTSDGKRKMSPWQRMKWTDSMVRLLIMA 51
           +KPK  SP S    D+++   G        D   +DGKRK+S W RMKWTD+MVRLLIMA
Sbjct: 58  SKPKQMSPISGGGCDDEDRGSGSGSGCNPEDSAGTDGKRKLSQWHRMKWTDTMVRLLIMA 117

Query: 52  VFYIGDEAGSEVNDPTG----------KKKAGGLSQKKGKWKSVSRAMMEKGFYVSPQQC 101
           VFYIGDEAG  +NDP                GG+ QKKGKWKSVSRAM+EKGF VSPQQC
Sbjct: 118 VFYIGDEAG--LNDPVDAKKKTGGGGGGGGGGGMLQKKGKWKSVSRAMVEKGFSVSPQQC 175

Query: 102 EDKFNDLNKRYKRVNDILGKGTACKVVENQSLLETMD-LSPKMKEEVKKLLNSKHLFFRE 160
           EDKFNDLNKRYKRVNDILGKG AC+VVENQ LLE+MD L+PK+K+EVKKLLNSKHLFFRE
Sbjct: 176 EDKFNDLNKRYKRVNDILGKGIACRVVENQGLLESMDHLTPKLKDEVKKLLNSKHLFFRE 235

Query: 161 MCAYHNSCGHGSSGVASGTTNHSPEVATDQSHAQHPHASHVQQQRCSHSSENAQLA 216
           MCAYHNSCGH       G     P+    Q+    P  S  QQQ C H++E  ++A
Sbjct: 236 MCAYHNSCGH-----LGGHDQQPPQ----QNPISIPIPS--QQQNCFHAAEAGKMA 280



 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 8/107 (7%)

Query: 312 IQDGAKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXX 371
           ++D  KS WEKK W++ +++E+EE+++ Y+ + +E+EKQR+KW+++ SKKEREME+AK  
Sbjct: 333 VEDVGKSVWEKKEWIRRKMLEIEEKKIGYEWEGVEMEKQRVKWMRYRSKKEREMEKAKLD 392

Query: 372 XXXXXXXXXXMVLLVRQKXXXXXXXXXXXXXXXXSSNKRSDPSSITG 418
                     M+L++R+                 SS  R DPSS  G
Sbjct: 393 NQRRRLETERMILMLRR--------SEIELNELQSSGTRVDPSSAKG 431


>AT1G76870.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 16 plant
           structures; EXPRESSED DURING: 11 growth stages; BEST
           Arabidopsis thaliana protein match is: transcription
           factor (TAIR:AT1G21200.1); Has 324 Blast hits to 269
           proteins in 64 species: Archae - 0; Bacteria - 2;
           Metazoa - 125; Fungi - 12; Plants - 63; Viruses - 0;
           Other Eukaryotes - 122 (source: NCBI BLink). |
           chr1:28857250-28858407 FORWARD
          Length = 385

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 133/193 (68%), Gaps = 16/193 (8%)

Query: 13  SDEDEHFIGDDVTSDGKRKM---SPWQRMKWTDSMVRLLIMAVFYIGDEAGSEVNDPTGK 69
           S++DE  +   ++SDG+ K    SPWQR+KW D MV+L+I A+ YIG+++GS+       
Sbjct: 61  SEDDELCL---LSSDGQNKSKENSPWQRVKWMDKMVKLMITALSYIGEDSGSD------- 110

Query: 70  KKAGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVE 129
            K   + QKKGKW+SVS+ M E+G++VSPQQCEDKFNDLNKRYK++N++LG+GT+C+VVE
Sbjct: 111 -KKFAVLQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTSCEVVE 169

Query: 130 NQSLLETMD-LSPKMKEEVKKLLNSKHLFFREMCAYHNSCG-HGSSGVASGTTNHSPEVA 187
           N SLL+ +D L+ K K+EV+++++SKHLF+ EMC+YHN    H     A   + H   + 
Sbjct: 170 NPSLLDKIDYLNEKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSLHLITLG 229

Query: 188 TDQSHAQHPHASH 200
           +   H    H  H
Sbjct: 230 SRDDHDNDEHGKH 242


>AT1G21200.1 | Symbols:  | transcription factor |
           chr1:7421483-7422814 FORWARD
          Length = 443

 Score =  177 bits (450), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 124/161 (77%), Gaps = 11/161 (6%)

Query: 13  SDEDEHFI----GDDVTSDGKR--KMSPWQRMKWTDSMVRLLIMAVFYIGDEAGSEVNDP 66
           SD+DE       GD V ++  R  K SPWQR+KWTD MV+LLI AV YIGD++  +    
Sbjct: 86  SDDDEPSFTEEGGDGVHNEANRSTKGSPWQRVKWTDKMVKLLITAVSYIGDDSSID---- 141

Query: 67  TGKKKAGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACK 126
           +  ++   + QKKGKWKSVS+ M E+G++VSPQQCEDKFNDLNKRYK++ND+LG+GT+C+
Sbjct: 142 SSSRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQ 201

Query: 127 VVENQSLLETMD-LSPKMKEEVKKLLNSKHLFFREMCAYHN 166
           VVEN +LL+++  L+ K K++V+K+++SKHLF+ EMC+YHN
Sbjct: 202 VVENPALLDSIGYLNDKEKDDVRKIMSSKHLFYEEMCSYHN 242



 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 322 KKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXXXXXXXXXXXX 381
           +K WM+ R ++LEEQ++  Q + LELEKQR +W +FS K+++E+ER +            
Sbjct: 370 QKQWMESRTLQLEEQKLQIQVELLELEKQRFRWQRFSKKRDQELERMRMENERMKLENDR 429

Query: 382 MVLLVRQK 389
           M L ++Q+
Sbjct: 430 MGLELKQR 437