Jatropha Genome Database

JcCB0424111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424111.10 + phase: 2 /partial
         (103 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | NRPB9A; DNA bind...   179   4e-46
AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | NRPB9B; DNA bind...   178   7e-46

>AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | NRPB9A; DNA binding
           / DNA-directed RNA polymerase/ nucleic acid binding /
           transcription regulator/ zinc ion binding |
           chr3:5794526-5795699 FORWARD
          Length = 114

 Score =  179 bits (453), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 94/104 (90%), Gaps = 1/104 (0%)

Query: 1   NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
           NNILYPKEDK+Q+ILLYACRNCDHQEVADN+ VYRNEV HSV+E TQIL DVASDPTLPR
Sbjct: 11  NNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPR 70

Query: 61  TKSVRCSACGHGEAVFLQATSR-EEGFTLFYVCCNPNCGNRWRD 103
           TK+VRCS C H EAVF QAT+R EEG TLF+VCCNPNCG+RWR+
Sbjct: 71  TKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114


>AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | NRPB9B; DNA binding
           / DNA-directed RNA polymerase/ nucleic acid binding /
           transcription regulator/ zinc ion binding |
           chr4:9202529-9203975 REVERSE
          Length = 114

 Score =  178 bits (451), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 92/104 (88%), Gaps = 1/104 (0%)

Query: 1   NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
           NNILYPKEDK+Q ILLYACRNCDHQE ADNN VYRNEV HSV+E TQIL DVASDPTLPR
Sbjct: 11  NNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILSDVASDPTLPR 70

Query: 61  TKSVRCSACGHGEAVFLQATSR-EEGFTLFYVCCNPNCGNRWRD 103
           TK+VRC+ C HGEAVF QAT+R EEG TLF+VCCNPNC +RWR+
Sbjct: 71  TKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114