Jatropha Genome Database

JcCB0423721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0423721.10 + phase: 0 /partial
         (162 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD     70   5e-13

>AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD
          Length = 1068

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 49/87 (56%)

Query: 51  KFESIMSEYGMQISRILLSQLHCADEDXXXXXXCILKKSIFKPNYSSGKDLTDSRQMDVX 110
           KFESI+SEYGM++  ILL QL   +E+       I K   FK    SG   +D+  MDV 
Sbjct: 359 KFESILSEYGMKLVPILLHQLRSNNEEISEGVVAIFKAVFFKLQSQSGDSFSDTMCMDVV 418

Query: 111 XXXXXXXXDENDGIARAVVMLIAEYCS 137
                   DE DG A+AV +L+A+YCS
Sbjct: 419 IPSLLHLLDERDGAAKAVSVLLADYCS 445