Jatropha Genome Database

JcCB0423521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0423521.10 + phase: 0 /partial
         (148 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...   278   7e-76
AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...   277   2e-75
AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOME...   199   5e-52

>AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 306

 Score =  278 bits (712), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/148 (92%), Positives = 142/148 (95%)

Query: 1   FIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDKIVIAYEPV 60
           FIGKKAAYALSEGLGVIACIGE LEEREAGKTFDVCF QLKA+ADAVPSWD IV+AYEPV
Sbjct: 159 FIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPV 218

Query: 61  WAIGTGKVATPQQAQEVHVALRDWLKKNVSEAVASKTRIIYGGSVNGGNCAELAKQEDID 120
           WAIGTGKVA+PQQAQEVHVA+R WLKKNVSE VASKTRIIYGGSVNGGN AELAK+EDID
Sbjct: 219 WAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDID 278

Query: 121 GFLVGGASLKGPEFATIVNSVTSKKVAA 148
           GFLVGGASLKGPEFATIVNSVTSKKVAA
Sbjct: 279 GFLVGGASLKGPEFATIVNSVTSKKVAA 306


>AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 315

 Score =  277 bits (709), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/148 (92%), Positives = 142/148 (95%)

Query: 1   FIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDKIVIAYEPV 60
           FIGKKAAYALSEGLGVIACIGE LEEREAGKTFDVCF QLKA+ADAVPSWD IV+AYEPV
Sbjct: 168 FIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPV 227

Query: 61  WAIGTGKVATPQQAQEVHVALRDWLKKNVSEAVASKTRIIYGGSVNGGNCAELAKQEDID 120
           WAIGTGKVA+PQQAQEVHVA+R WLKKNVSE VASKTRIIYGGSVNGGN AELAK+EDID
Sbjct: 228 WAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDID 287

Query: 121 GFLVGGASLKGPEFATIVNSVTSKKVAA 148
           GFLVGGASLKGPEFATIVNSVTSKKVAA
Sbjct: 288 GFLVGGASLKGPEFATIVNSVTSKKVAA 315


>AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE
           ISOMERASE); triose-phosphate isomerase |
           chr3:20553794-20556078 FORWARD
          Length = 254

 Score =  199 bits (506), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 1   FIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDKIVIAYEPV 60
           F+G K AYAL++GL VIAC+GE LEEREAG T DV   Q KA AD V +W  +VIAYEPV
Sbjct: 109 FVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPV 168

Query: 61  WAIGTGKVATPQQAQEVHVALRDWLKKNVSEAVASKTRIIYGGSVNGGNCAELAKQEDID 120
           WAIGTGKVA+P QAQEVH  LR WL KNVS  VA+ TRIIYGGSVNGGNC EL  Q D+D
Sbjct: 169 WAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVD 228

Query: 121 GFLVGGASLKGPEFATIVNSVTSKKVA 147
           GFLVGGASLK PEF  I+ +   KK A
Sbjct: 229 GFLVGGASLK-PEFIDIIKAAEVKKSA 254