Jatropha Genome Database

JcCB0421511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0421511.10 + phase: 1 /pseudo/partial
         (162 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50530.1 | Symbols:  | CBS domain-containing protein / octico...   116   5e-27
AT5G50640.1 | Symbols:  | CBS domain-containing protein / octico...   116   5e-27
AT5G63490.1 | Symbols:  | CBS domain-containing protein / octico...   107   3e-24
AT3G52950.1 | Symbols:  | CBS domain-containing protein / octico...    69   1e-12
AT2G36500.1 | Symbols:  | CBS domain-containing protein / octico...    59   1e-09

>AT5G50530.1 | Symbols:  | CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein | chr5:20571876-20574922 REVERSE
          Length = 548

 Score =  116 bits (291), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 73/105 (69%)

Query: 28  LVLKLKTRRAGCTVFTCDTRSLTDLITSILQRLGDDIDRNNLPQILYEDEDHDKVVLESD 87
              KL+ ++     F C+T+SLT LIT+ILQR+GDDI+ +NLPQI+YEDED+DKVVL SD
Sbjct: 414 FAFKLQDKKGRMHRFMCETQSLTTLITAILQRMGDDIEPDNLPQIMYEDEDNDKVVLASD 473

Query: 88  SDLVTAVDHAKSAGLKGLRLHLDYXXXXXXXXXXXXXDLDYTHTD 132
           +DL  AV+HAKS G KGL+LHLDY             D+DY  ++
Sbjct: 474 NDLGAAVEHAKSIGWKGLKLHLDYTEERGHRRGLSSEDMDYDQSN 518


>AT5G50640.1 | Symbols:  | CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein | chr5:20605218-20608264 REVERSE
          Length = 548

 Score =  116 bits (291), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 73/105 (69%)

Query: 28  LVLKLKTRRAGCTVFTCDTRSLTDLITSILQRLGDDIDRNNLPQILYEDEDHDKVVLESD 87
              KL+ ++     F C+T+SLT LIT+ILQR+GDDI+ +NLPQI+YEDED+DKVVL SD
Sbjct: 414 FAFKLQDKKGRMHRFMCETQSLTTLITAILQRMGDDIEPDNLPQIMYEDEDNDKVVLASD 473

Query: 88  SDLVTAVDHAKSAGLKGLRLHLDYXXXXXXXXXXXXXDLDYTHTD 132
           +DL  AV+HAKS G KGL+LHLDY             D+DY  ++
Sbjct: 474 NDLGAAVEHAKSIGWKGLKLHLDYTEERGHRRGLSSEDMDYDQSN 518


>AT5G63490.1 | Symbols:  | CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein | chr5:25418716-25421970 REVERSE
          Length = 543

 Score =  107 bits (267), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/69 (72%), Positives = 59/69 (85%)

Query: 42  FTCDTRSLTDLITSILQRLGDDIDRNNLPQILYEDEDHDKVVLESDSDLVTAVDHAKSAG 101
           F  DTRSLT++IT+I+QR+GDDID +N PQILYEDEDHDKV+L SDSDL  A++HAKS G
Sbjct: 419 FISDTRSLTEVITAIIQRVGDDIDPDNFPQILYEDEDHDKVLLASDSDLQAAIEHAKSIG 478

Query: 102 LKGLRLHLD 110
            K LRLHLD
Sbjct: 479 WKSLRLHLD 487


>AT3G52950.1 | Symbols:  | CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein | chr3:19634866-19636536 FORWARD
          Length = 556

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 5/73 (6%)

Query: 42  FTCDTRSLTDLITSILQRLGDDIDRNNL---PQILYEDEDHDKVVLESDSDLVTAVDHAK 98
           FT    +L +L+  ++QR+G D   NN+   PQI+YED++ DKV++ SDSDLV AV  A+
Sbjct: 431 FTSGAENLEELMGIVMQRIGSD--NNNVEQRPQIIYEDDEGDKVLITSDSDLVGAVTLAR 488

Query: 99  SAGLKGLRLHLDY 111
           S G K LRLHLD+
Sbjct: 489 STGQKVLRLHLDF 501


>AT2G36500.1 | Symbols:  | CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein | chr2:15318473-15320083 FORWARD
          Length = 536

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 28  LVLKLKTRRAGCTVFTCDTRSLTDLITSILQRLGDDIDRNNLPQILYEDEDHDKVVLESD 87
              K + R+     F     S  +L++ ++QR   D       QI+Y+D++ DKV++  D
Sbjct: 409 FAFKFEDRKGRVQRFNSTGESFEELMSVVMQRCEADSGL----QIMYQDDEGDKVLISRD 464

Query: 88  SDLVTAVDHAKSAGLKGLRLHLDY 111
           SDLV AV  A+S G K LRLHLD+
Sbjct: 465 SDLVAAVTFARSLGQKVLRLHLDF 488