Jatropha Genome Database

JcCB0418191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0418191.10 + phase: 0 /pseudo/partial
         (166 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63890.1 | Symbols: ATHDH | ATHDH (HISTIDINOL DEHYDROGENASE);...   155   9e-39
AT5G63890.2 | Symbols: ATHDH | ATHDH (HISTIDINOL DEHYDROGENASE);...   155   1e-38

>AT5G63890.1 | Symbols: ATHDH | ATHDH (HISTIDINOL DEHYDROGENASE);
           histidinol dehydrogenase | chr5:25565600-25567879
           REVERSE
          Length = 452

 Score =  155 bits (393), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 82/95 (86%)

Query: 30  QNSEAMISIDMPAGPSEVLVIADKHASPVHIAADLLSQAEHGPDSQXXXXXXXXXXXXKA 89
           QNSEAM+SIDMPAGPSEVLVIAD+HASPV+IAADLLSQAEHGPDSQ             A
Sbjct: 237 QNSEAMVSIDMPAGPSEVLVIADEHASPVYIAADLLSQAEHGPDSQVVLVVVGDSVDLNA 296

Query: 90  IEEEISKQCQSLPRGEYASKALSHSFTVFARDMVE 124
           IEEEI+KQC+SLPRGE+ASKALSHSFTVFARDM+E
Sbjct: 297 IEEEIAKQCKSLPRGEFASKALSHSFTVFARDMIE 331


>AT5G63890.2 | Symbols: ATHDH | ATHDH (HISTIDINOL DEHYDROGENASE);
           histidinol dehydrogenase | chr5:25565600-25568104
           REVERSE
          Length = 466

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 82/95 (86%)

Query: 30  QNSEAMISIDMPAGPSEVLVIADKHASPVHIAADLLSQAEHGPDSQXXXXXXXXXXXXKA 89
           QNSEAM+SIDMPAGPSEVLVIAD+HASPV+IAADLLSQAEHGPDSQ             A
Sbjct: 251 QNSEAMVSIDMPAGPSEVLVIADEHASPVYIAADLLSQAEHGPDSQVVLVVVGDSVDLNA 310

Query: 90  IEEEISKQCQSLPRGEYASKALSHSFTVFARDMVE 124
           IEEEI+KQC+SLPRGE+ASKALSHSFTVFARDM+E
Sbjct: 311 IEEEIAKQCKSLPRGEFASKALSHSFTVFARDMIE 345