Jatropha Genome Database

JcCB0417211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0417211.10 - phase: 0 /pseudo/partial/short
         (34 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48660.1 | Symbols:  | unknown protein | chr3:18029659-180301...    56   4e-09
AT5G08391.1 | Symbols:  | unknown protein | chr5:2699357-2699566...    51   1e-07
AT5G63500.1 | Symbols:  | unknown protein | chr5:25423460-254236...    50   2e-07
AT3G27030.1 | Symbols:  | unknown protein | chr3:9972508-9974225...    50   3e-07
AT5G40980.1 | Symbols:  | unknown protein | chr5:16414877-164150...    49   5e-07
AT3G27027.1 | Symbols:  | unknown protein | chr3:9971921-9972130...    47   2e-06
AT5G40970.1 | Symbols:  | unknown protein | chr5:16414081-164142...    46   5e-06

>AT3G48660.1 | Symbols:  | unknown protein |
          chr3:18029659-18030133 FORWARD
          Length = 89

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 28/29 (96%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV+VAV+LFVLLTPGLLFQIP +G
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARG 29


>AT5G08391.1 | Symbols:  | unknown protein | chr5:2699357-2699566
          FORWARD
          Length = 69

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 27/28 (96%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGK 28
          M+DWGPV+V V+LFV+LTPGLLFQ+PG+
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGR 28


>AT5G63500.1 | Symbols:  | unknown protein |
          chr5:25423460-25423669 FORWARD
          Length = 69

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 27/29 (93%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV++AV+LFV+L+PGLLFQIP  G
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGG 29


>AT3G27030.1 | Symbols:  | unknown protein | chr3:9972508-9974225
          REVERSE
          Length = 142

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 25/29 (86%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          M DWGPV VAV LFVLLTPGLL Q+PG+G
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRG 29



 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query: 1   MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
           MADW PV+V VVLFV+L+PGLLF +PG  
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNN 102


>AT5G40980.1 | Symbols:  | unknown protein |
          chr5:16414877-16415086 REVERSE
          Length = 69

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 25/27 (92%)

Query: 2  ADWGPVIVAVVLFVLLTPGLLFQIPGK 28
          ADWGPVIVAV LF+LL+PGLLFQ+P +
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPAR 29


>AT3G27027.1 | Symbols:  | unknown protein | chr3:9971921-9972130
          FORWARD
          Length = 69

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 24/27 (88%)

Query: 2  ADWGPVIVAVVLFVLLTPGLLFQIPGK 28
           DWGPVIVAV LF+LL+PGLLFQ+P +
Sbjct: 3  TDWGPVIVAVSLFILLSPGLLFQLPAR 29


>AT5G40970.1 | Symbols:  | unknown protein |
          chr5:16414081-16414290 FORWARD
          Length = 69

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGK 28
          MADW PV+V VVLFV+L+PGLLF +PG 
Sbjct: 1  MADWAPVLVGVVLFVILSPGLLFSLPGH 28