Jatropha Genome Database

JcCB0415641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0415641.10 - phase: 1 /partial
         (144 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17120.1 | Symbols: LYM2 | LYM2 (LYSM DOMAIN GPI-ANCHORED PRO...    81   2e-16
AT1G77630.1 | Symbols:  | peptidoglycan-binding LysM domain-cont...    49   8e-07

>AT2G17120.1 | Symbols: LYM2 | LYM2 (LYSM DOMAIN GPI-ANCHORED
           PROTEIN 2 PRECURSOR) | chr2:7459156-7460648 FORWARD
          Length = 350

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 73/135 (54%), Gaps = 20/135 (14%)

Query: 1   CNSSVSTTSIDYPLLVPNGTYFFTANSCVKCNCDAANNWTLQCEPSG-FRPAAKSTWSTC 59
           C+SSV   S+D PLL+ N +Y FTAN+CVKC CDA  NWTL C+ S   +P   S W TC
Sbjct: 221 CSSSVRKDSLDAPLLLSNNSYVFTANNCVKCTCDALKNWTLSCQSSSEIKP---SNWQTC 277

Query: 60  PSM-RCDXXXXXXXXXXXXXXXXXXXXXYAGFSSQNILTTLATVSTCP-ATGPGIESPDD 117
           P   +CD                     YAG+S+Q I TT +    CP + GP      D
Sbjct: 278 PPFSQCD------GALLNASCRQPRDCVYAGYSNQTIFTTASPA--CPDSAGP------D 323

Query: 118 NYASRISLSWSFLRI 132
           NYAS +S S++F+ +
Sbjct: 324 NYASTLSSSFNFVIV 338


>AT1G77630.1 | Symbols:  | peptidoglycan-binding LysM
           domain-containing protein | chr1:29173726-29175387
           FORWARD
          Length = 423

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 16/125 (12%)

Query: 1   CNSSVSTTSIDYPLLVPNGTYFFTANSCVKCNCDAANNWTLQCEPSGFRPAAKSTWSTCP 60
           C+S+    + DY L++PNG+Y  TA  CV+C+C    + ++ CEP+       S   +C 
Sbjct: 221 CSSNFPKYATDYGLIIPNGSYALTAGHCVQCSC-VLGSRSMYCEPA-------SISVSCS 272

Query: 61  SMRC---DXXXXXXXXXXXXXXXXXXXXXYAGFSSQNILTTLAT--VSTCPA---TGPGI 112
           SMRC   +                     Y GF+S  ILTTL+      CP      P I
Sbjct: 273 SMRCRNSNFMLGNITSQQSSSGCKLTTCSYNGFASGTILTTLSMSLQPRCPGPQQLAPLI 332

Query: 113 ESPDD 117
             PD+
Sbjct: 333 APPDN 337