Jatropha Genome Database
- JcCB0411911.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0411911.10 + phase: 0 /partial
(169 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 174 2e-44
AT1G08070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 130 4e-31
AT2G20540.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 120 5e-28
AT5G66520.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 116 7e-27
AT5G06540.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 115 1e-26
AT5G08510.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 115 2e-26
AT1G43980.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 114 3e-26
AT2G21090.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 114 4e-26
AT5G08310.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 112 1e-25
AT4G37380.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 112 2e-25
AT5G56310.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 112 2e-25
AT2G13600.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 111 2e-25
AT4G18840.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 110 4e-25
AT1G06145.1 | Symbols: EMB1444 | EMB1444 (EMBRYO DEFECTIVE 1444)... 110 4e-25
AT5G59200.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 110 4e-25
AT3G26630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 109 6e-25
AT3G62890.1 | Symbols: | binding | chr3:23246168-23247973 FORWARD 109 1e-24
AT3G15930.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 107 2e-24
AT2G42920.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 105 1e-23
AT5G44230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 102 8e-23
AT4G37170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 102 1e-22
AT1G13410.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 101 2e-22
AT2G22410.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 101 2e-22
AT1G74630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 101 3e-22
AT2G36980.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 99 1e-21
AT4G22760.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 99 1e-21
AT1G04840.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 99 2e-21
AT3G29230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 98 2e-21
AT1G05750.1 | Symbols: PDE247, CLB19 | PDE247 (pigment defective... 98 2e-21
AT1G09190.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 98 2e-21
AT1G17630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 97 4e-21
AT1G25360.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 97 4e-21
AT1G33350.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 97 6e-21
AT4G02750.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 96 9e-21
AT5G61800.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 95 2e-20
AT4G20770.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 94 4e-20
AT3G02330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 93 7e-20
AT5G19020.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 93 8e-20
AT1G68930.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 93 8e-20
AT5G55740.1 | Symbols: CRR21 | CRR21 (chlororespiratory reductio... 92 1e-19
AT1G31430.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 92 2e-19
AT2G35030.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 91 4e-19
AT5G16860.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 91 4e-19
AT3G21470.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 90 6e-19
AT3G22690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 90 6e-19
AT1G53600.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 89 1e-18
AT3G49140.2 | Symbols: | EXPRESSED IN: 22 plant structures; EXP... 89 1e-18
AT3G49140.1 | Symbols: | EXPRESSED IN: 23 plant structures; EXP... 89 2e-18
AT3G04750.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 89 2e-18
AT1G77010.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 88 2e-18
AT4G14820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 88 2e-18
AT2G29760.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 88 3e-18
AT2G44880.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 87 4e-18
AT5G48910.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 87 4e-18
AT3G49740.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 87 5e-18
AT3G09040.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 87 5e-18
AT5G15300.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 86 9e-18
AT3G61170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 86 1e-17
AT1G56690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 86 1e-17
AT4G21065.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 86 1e-17
AT4G14050.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 86 2e-17
AT5G46460.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 86 2e-17
AT5G15340.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 85 2e-17
AT3G18840.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 85 2e-17
AT1G62260.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 85 2e-17
AT3G49710.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 85 3e-17
AT2G41080.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 84 4e-17
AT3G51320.1 | Symbols: | INVOLVED IN: biological_process unknow... 84 5e-17
AT3G02010.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 84 5e-17
AT1G10330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 83 6e-17
AT4G18750.1 | Symbols: DOT4 | DOT4 (DEFECTIVELY ORGANIZED TRIBUT... 83 8e-17
AT3G08820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 83 1e-16
AT2G45350.1 | Symbols: CRR4 | CRR4 (CHLORORESPIRATORY REDUCTION ... 82 1e-16
AT5G37570.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 82 2e-16
AT4G08210.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 82 2e-16
AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 82 2e-16
AT2G34400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 82 2e-16
AT4G16835.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 81 3e-16
AT1G19720.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 81 3e-16
AT5G09950.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 81 4e-16
AT5G13270.1 | Symbols: RARE1 | pentatricopeptide (PPR) repeat-co... 80 5e-16
AT5G47460.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 80 6e-16
AT1G50270.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 80 6e-16
AT1G09220.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 80 7e-16
AT1G14470.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 80 7e-16
AT1G11290.1 | Symbols: CRR22 | CRR22 (CHLORORESPIRATORY REDUCTIO... 80 8e-16
AT3G26540.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 80 8e-16
AT3G12770.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 79 1e-15
AT5G40405.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 79 1e-15
AT5G42450.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 79 2e-15
AT1G59720.1 | Symbols: CRR28 | CRR28 (CHLORORESPIRATORY REDUCTIO... 79 2e-15
AT1G20230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 79 2e-15
AT2G37310.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 78 2e-15
AT4G14850.1 | Symbols: LOI1 | LOI1 (lovastatin insensitive 1) | ... 78 2e-15
AT3G11460.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 78 3e-15
AT1G28690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 78 3e-15
AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 78 3e-15
AT5G08490.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 77 6e-15
AT4G30700.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 76 1e-14
AT4G35130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 75 2e-14
AT4G13650.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 75 2e-14
AT3G13880.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 75 3e-14
AT5G52630.1 | Symbols: MEF1 | MEF1 (MITOCHONDRIAL RNA EDITING FA... 74 4e-14
AT2G27610.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 74 5e-14
AT4G25270.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 74 5e-14
AT1G77170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 74 5e-14
AT1G56570.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 74 6e-14
AT5G13230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 74 6e-14
AT2G39620.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 73 7e-14
AT2G33680.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 73 7e-14
AT4G39530.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 73 9e-14
AT3G03580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 73 9e-14
AT3G13770.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 73 1e-13
AT5G52850.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 72 1e-13
AT1G03540.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 72 1e-13
AT4G21065.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 72 2e-13
AT3G24000.1 | Symbols: | INVOLVED IN: biological_process unknow... 72 2e-13
AT2G02750.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 72 2e-13
AT4G15720.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 72 2e-13
AT3G23330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 71 3e-13
AT2G36730.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 71 3e-13
AT1G74600.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 71 3e-13
AT3G53360.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 70 5e-13
AT4G18520.1 | Symbols: | INVOLVED IN: biological_process unknow... 70 5e-13
AT1G15510.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 70 6e-13
AT1G69350.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 70 8e-13
AT3G28640.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 70 9e-13
AT1G19290.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED I... 69 9e-13
AT2G02980.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 69 1e-12
AT3G57430.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 69 1e-12
AT3G28660.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 69 1e-12
AT2G46050.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 69 2e-12
AT2G33760.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 68 3e-12
AT3G14730.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 68 3e-12
AT3G58590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 4e-12
AT3G22150.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 4e-12
AT3G47840.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 4e-12
AT5G04780.1 | Symbols: | INVOLVED IN: biological_process unknow... 67 4e-12
AT5G50390.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 4e-12
AT4G33170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 4e-12
AT3G20730.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 5e-12
AT4G32430.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 5e-12
AT3G16610.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 5e-12
AT2G37320.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 5e-12
AT5G39350.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 6e-12
AT4G01030.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 67 7e-12
AT4G33990.1 | Symbols: EMB2758 | EMB2758 (embryo defective 2758)... 66 1e-11
AT3G50420.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 66 1e-11
AT5G66500.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 66 1e-11
AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | EMB175 (EMBRYO ... 66 1e-11
AT4G21300.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 66 1e-11
AT2G40720.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 65 1e-11
AT2G03380.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 65 2e-11
AT1G71420.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 65 2e-11
AT3G05340.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 65 3e-11
AT5G59600.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 64 4e-11
AT1G64580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 64 4e-11
AT5G59900.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 64 4e-11
AT5G27110.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 64 4e-11
AT3G01580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 64 4e-11
AT4G38010.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 64 5e-11
AT3G46790.1 | Symbols: CRR2 | CRR2 (CHLORORESPIRATORY REDUCTION ... 64 5e-11
AT2G35130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 64 6e-11
AT1G63400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 63 7e-11
AT5G39680.1 | Symbols: EMB2744 | EMB2744 (EMBRYO DEFECTIVE 2744)... 63 9e-11
AT5G61990.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 63 1e-10
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 63 1e-10
AT1G03510.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 1e-10
AT4G19191.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 62 1e-10
AT3G25060.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 1e-10
AT3G26782.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED I... 62 1e-10
AT3G47530.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 1e-10
AT1G71460.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 1e-10
AT1G63230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 1e-10
AT4G04370.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT5G65570.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT3G56550.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT2G03880.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT1G22830.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT1G22830.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT4G31070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT3G15130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT1G63130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT2G17210.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 2e-10
AT1G63330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 61 3e-10
AT1G26900.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 61 3e-10
AT3G49170.1 | Symbols: EMB2261 | EMB2261 (embryo defective 2261)... 60 5e-10
AT1G16480.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 60 5e-10
AT3G05240.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 60 5e-10
AT5G16420.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 60 6e-10
AT3G14330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 60 6e-10
AT3G25970.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 60 7e-10
AT2G04860.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 60 9e-10
AT4G39952.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 60 9e-10
AT1G06140.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 59 1e-09
AT1G74400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 59 1e-09
AT1G71490.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 59 2e-09
AT5G40410.1 | Symbols: | INVOLVED IN: biological_process unknow... 59 2e-09
AT4G16470.1 | Symbols: | INVOLVED IN: biological_process unknow... 59 2e-09
AT3G17370.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 59 2e-09
AT1G62930.1 | Symbols: | INVOLVED IN: biological_process unknow... 58 2e-09
AT1G31920.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 2e-09
AT1G63630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 2e-09
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 3e-09
AT1G77340.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 3e-09
AT2G37230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 4e-09
AT5G41170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 57 4e-09
AT5G38730.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 57 4e-09
AT1G12300.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 57 4e-09
AT1G18485.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 57 4e-09
AT1G74850.1 | Symbols: PTAC2 | PTAC2 (PLASTID TRANSCRIPTIONALLY ... 57 5e-09
AT5G39710.1 | Symbols: EMB2745 | EMB2745 (EMBRYO DEFECTIVE 2745)... 57 5e-09
AT1G09680.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 57 6e-09
AT1G62670.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 57 6e-09
AT2G17140.1 | Symbols: | EXPRESSED IN: 7 plant structures; EXPR... 57 6e-09
AT3G63370.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 57 7e-09
AT4G14170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 9e-09
AT1G12620.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 1e-08
AT3G18970.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 1e-08
AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 1e-08
AT5G02860.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 1e-08
AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 1e-08
AT1G53330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 1e-08
AT1G34160.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 1e-08
AT5G16640.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 2e-08
AT5G65560.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 2e-08
AT1G22960.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 2e-08
AT3G13150.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 2e-08
AT1G09900.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 2e-08
AT1G12775.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED I... 55 3e-08
AT1G55890.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 3e-08
AT1G06580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 3e-08
AT2G15690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 4e-08
AT1G31790.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 4e-08
AT5G46100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 4e-08
AT2G31400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 5e-08
AT3G53700.1 | Symbols: MEE40 | MEE40 (maternal effect embryo arr... 54 5e-08
AT1G52620.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 8e-08
AT2G02150.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 9e-08
AT5G61400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 1e-07
AT3G22470.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 1e-07
AT1G63630.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 1e-07
AT1G74580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT2G34370.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT1G23450.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT5G50990.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 52 2e-07
AT3G13160.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 3e-07
AT2G01510.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 3e-07
AT3G06920.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 5e-07
AT4G19220.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 5e-07
AT5G62370.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 5e-07
AT5G39980.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 7e-07
AT4G28010.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 8e-07
AT2G16880.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 8e-07
AT4G26680.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 9e-07
AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 9e-07
AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 1e-06
AT1G16830.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 49 1e-06
AT1G64310.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 1e-06
AT5G01110.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT3G54980.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT2G32630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT1G13040.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT1G64100.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT1G11710.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT1G79490.1 | Symbols: EMB2217 | EMB2217 (embryo defective 2217)... 49 2e-06
AT1G51965.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 2e-06
AT3G16710.1 | Symbols: | INVOLVED IN: biological_process unknow... 48 2e-06
AT4G11690.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 3e-06
AT1G62720.1 | Symbols: | INVOLVED IN: biological_process unknow... 48 3e-06
AT1G09820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 3e-06
AT2G06000.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 4e-06
AT2G06000.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 4e-06
AT2G39230.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 4e-06
AT5G64320.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 4e-06
AT5G43790.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 5e-06
AT1G62680.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 47 5e-06
AT1G12700.1 | Symbols: | helicase domain-containing protein / p... 47 5e-06
AT1G05670.2 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transfer... 47 5e-06
AT1G05670.1 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transfer... 47 5e-06
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 6e-06
AT3G60050.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 6e-06
AT1G02060.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 7e-06
AT3G02650.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 8e-06
>AT2G22070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:9383602-9385962 FORWARD
Length = 786
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 112/151 (74%), Gaps = 1/151 (0%)
Query: 17 LLQTNL-KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK 75
LLQ ++ KS + +H ++IK GL FS+YL NNL+N+Y+K+GY + AR +FDEMP++
Sbjct: 19 LLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
+ FSWNT+LS Y+++G +D FD++P RDSVSWTTMIVGY + + AI++ DMV
Sbjct: 79 TAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV 138
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
K+ + P+QFT+TNVL+S AA R ++ G+K+H
Sbjct: 139 KEGIEPTQFTLTNVLASVAATRCMETGKKVH 169
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 24 SKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
++ + K +H+ ++KLGL ++ ++N+L+N+YAK G + A+ VFD M V+ SWN +
Sbjct: 159 TRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAM 218
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK-VSPS 142
++ + + G++D A+ F+++ +RD V+W +MI G+NQ A+ +F M++D +SP
Sbjct: 219 IALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPD 278
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
+FT+ +VLS+CA L L IG++IH
Sbjct: 279 RFTLASVLSACANLEKLCIGKQIH 302
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK--STFSWNT 82
+ L + K IH+ ++ G + S + N LI++Y++ G + AR + ++ K +
Sbjct: 293 EKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTA 352
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
+L GY + G +++A ++F + DRD V+WT MIVGY Q + AI +F MV P+
Sbjct: 353 LLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPN 412
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
+T+ +LS ++L +L G++IH
Sbjct: 413 SYTLAAMLSVASSLASLSHGKQIH 436
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 32/135 (23%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH +K G +S+ ++N LI +YAK+
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKA------------------------------- 461
Query: 91 GKLDKALHVFDEIP-DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
G + A FD I +RD+VSWT+MI+ Q E A+++F M+ + + P T V
Sbjct: 462 GNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGV 521
Query: 150 LSSCAALRALDIGRK 164
S+C ++ GR+
Sbjct: 522 FSACTHAGLVNQGRQ 536
>AT1G08070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:2514374-2516599 REVERSE
Length = 741
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 100/156 (64%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F+L++ KSK + IH ++KLG + +Y+ +LI++Y ++G + DA VFD+ P
Sbjct: 137 FPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSP 196
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ S+ ++ GYA +G ++ A +FDEIP +D VSW MI GY + ++ A+++F D
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 256
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
M+K V P + T+ V+S+CA ++++GR++HL +
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 292
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 57 AKSGYIVDARNV---FDEMPVKSTFSW-NTILSGYARQGKLDKALHVFDEIPDRDSVSWT 112
A+SG I R V D+ S N ++ Y++ G+L+ A +F+ +P +D +SW
Sbjct: 277 AQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWN 336
Query: 113 TMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHL 167
T+I GY M ++ A+ +F +M++ +P+ T+ ++L +CA L A+DIGR IH+
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
K L + IHAQMIK+GL+ + Y + LI S + F+ +P
Sbjct: 44 KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPH-------FEGLPY---------- 86
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
A+ VF I + + + W TM G+ + +A+K++V M+ + P+ +
Sbjct: 87 -----------AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSY 135
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T VL SCA +A G++IH
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIH 157
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
+++ YA+ G ++ A VF+ I + SW MI G+ + + +F M K + P
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468
Query: 142 SQFTITNVLSSCAALRALDIGRKI 165
T +LS+C+ LD+GR I
Sbjct: 469 DDITFVGLLSACSHSGMLDLGRHI 492
>AT2G20540.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:8844160-8845764 FORWARD
Length = 534
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F+ ++ + + K +H + K G F + N LI++Y K +VDA VFDEM
Sbjct: 112 FPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMY 171
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ SWN++LSGYAR G++ KA +F + D+ VSWT MI GY + C+ A+ F +
Sbjct: 172 ERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFRE 231
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIHL 167
M + P + ++ +VL SCA L +L++G+ IHL
Sbjct: 232 MQLAGIEPDEISLISVLPSCAQLGSLELGKWIHL 265
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+K T N ++ Y++ G + +A+ +F ++ +D +SW+TMI GY AI+ F +
Sbjct: 273 LKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNE 332
Query: 134 MVKDKVSPSQFTITNVLSSCA-------ALRALDIGRK 164
M + KV P+ T +LS+C+ LR D+ R+
Sbjct: 333 MQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ 370
>AT5G66520.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:26551879-26553741 FORWARD
Length = 620
Score = 116 bits (290), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 84/134 (62%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IHAQ+ KLG +Y N+LIN YA +G A +FD +P SWN+++ GY + GK
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+D AL +F ++ +++++SWTTMI GY Q + A+++F +M V P ++ N LS+
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 153 CAALRALDIGRKIH 166
CA L AL+ G+ IH
Sbjct: 257 CAQLGALEQGKWIH 270
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
YA+ G++++AL VF I + +WT +I GY AI F++M K + P+ T
Sbjct: 292 YAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 351
Query: 147 TNVLSSCAALRALDIGRKI 165
T VL++C+ ++ G+ I
Sbjct: 352 TAVLTACSYTGLVEEGKLI 370
>AT5G06540.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1999181-2001049 REVERSE
Length = 622
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 94/151 (62%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ FL++ + + + + V + H+Q+++ G +Y+ N+L+++YA G+I A +F +M
Sbjct: 120 FPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMG 179
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ SW ++++GY + G ++ A +FDE+P R+ +W+ MI GY + CFE AI +F
Sbjct: 180 FRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEF 239
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRK 164
M ++ V ++ + +V+SSCA L AL+ G +
Sbjct: 240 MKREGVVANETVMVSVISSCAHLGALEFGER 270
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 71 EMPVKSTFSWNTILSG-----YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFE 125
E VKS + N IL + R G ++KA+HVF+ +P+ DS+SW+++I G
Sbjct: 273 EYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAH 332
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
A+ F M+ P T T VLS+C+ ++ G +I+
Sbjct: 333 KAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIY 373
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 37 MIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKA 96
++K + ++ L L++++ + G I A +VF+ +P + SW++I+ G A G KA
Sbjct: 275 VVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKA 334
Query: 97 LHVFDE------IPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
+H F + IP RD V++T ++ + E ++++ +M KD
Sbjct: 335 MHYFSQMISLGFIP-RD-VTFTAVLSACSHGGLVEKGLEIYENMKKD 379
>AT5G08510.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:2753099-2754731 FORWARD
Length = 511
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H+Q + G + LI YAK G + AR VFDEM + WN +++GY R+G
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 163
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK-VSPSQFTITNVLS 151
+ A+ +FD +P ++ SWTT+I G++Q + A+KMF+ M KDK V P+ T+ +VL
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223
Query: 152 SCAALRALDIGRKI 165
+CA L L+IGR++
Sbjct: 224 ACANLGELEIGRRL 237
>AT1G43980.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:16685832-16689502 REVERSE
Length = 633
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ +L SK+ ++ K +HAQ+++ G + Y N + LY KSG +++A +FD++P
Sbjct: 7 FSRLVNRSLLSKSPTLAKIVHAQLLEAGFVRTTYWGNRCLQLYFKSGSVINALQLFDDIP 66
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K+T +WN L G + G L+ AL +FDE+P+RD VSW TMI G E I++F D
Sbjct: 67 DKNTITWNVCLKGLFKNGYLNNALDLFDEMPERDVVSWNTMISGLVSCGFHEYGIRVFFD 126
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M + ++ P++FT + + S +R G +IH
Sbjct: 127 MQRWEIRPTEFTFSILASLVTCVRH---GEQIH 156
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
WN+++ Y R G D AL VF + DRD VSW +I+ + E A+ F M + ++
Sbjct: 172 WNSVMDMYRRLGVFDYALSVFLTMEDRDVVSWNCLILSCSDSGNKEVALDQFWLMREMEI 231
Query: 140 SPSQFTITNVLSSCAALRALDIGRK-IHLCV 169
P ++T++ V+S C+ LR L G++ + LC+
Sbjct: 232 QPDEYTVSMVVSICSDLRELSKGKQALALCI 262
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 74 VKSTFSWNTILSG-----YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI 128
+K F N+I+ G +++ +LD ++ +F E+ DSV +MI Y+ C E+A+
Sbjct: 262 IKMGFLSNSIVLGAGIDMFSKCNRLDDSVKLFRELEKWDSVLCNSMIGSYSWHCCGEDAL 321
Query: 129 KMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
++F+ + V P +FT ++VLSS A+ LD G +H
Sbjct: 322 RLFILAMTQSVRPDKFTFSSVLSSMNAV-MLDHGADVH 358
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H+ +IKLG + + +L+ +Y K+G + A VF + K WNT++ G AR +
Sbjct: 357 VHSLVIKLGFDLDTAVATSLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTVIMGLARNSR 416
Query: 93 LDKALHVFDEI-------PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
++L +F+++ PDR V+ ++V I++F M K
Sbjct: 417 AVESLAIFNQLLMNQSLKPDR--VTLMGILVACCYAGFVNEGIQIFSSMEK 465
>AT2G21090.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:9045695-9047488 REVERSE
Length = 597
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 92/153 (60%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+A LL +KS+ L + + H Q++ G ++ L+ ++I+ YAK G + A+ FDEM
Sbjct: 182 FAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMT 241
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
VK W T++SGYA+ G ++ A +F E+P+++ VSWT +I GY + A+ +F
Sbjct: 242 VKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRK 301
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M+ V P QFT ++ L + A++ +L G++IH
Sbjct: 302 MIALGVKPEQFTFSSCLCASASIASLRHGKEIH 334
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 12 DLYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNF-SIYLTNNLINLYAKSGYIVDARNVFD 70
DL A LLQ +K+L K IH + G + L+N+LI +Y K G +DA VFD
Sbjct: 47 DLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFD 106
Query: 71 EMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKM 130
+M +++ +SWN ++SGY + G L +A VFD +P+RD VSW TM++GY Q A+
Sbjct: 107 QMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWF 166
Query: 131 FVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + + + ++F+ +L++C R L + R+ H
Sbjct: 167 YKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAH 202
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 30/124 (24%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH MI+ + + + ++LI++Y+KSG + + VF
Sbjct: 331 KEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVF--------------------- 369
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
+ D+ D V W TMI Q A++M DM+K +V P++ T+ +L
Sbjct: 370 -------RICDD--KHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVIL 420
Query: 151 SSCA 154
++C+
Sbjct: 421 NACS 424
>AT5G08310.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:2670134-2675254 REVERSE
Length = 1280
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y FL++++ + N + S+H ++K GL + +++ N LI++Y AR +FDEMP
Sbjct: 857 YPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMP 916
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K+ +WN+IL YA+ G + A VFDE+ +RD V+W++MI GY + + A+++F
Sbjct: 917 HKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQ 976
Query: 134 MVKDKVSPS-QFTITNVLSSCAALRALDIGRKIH 166
M++ S + + T+ +V+ +CA L AL+ G+ +H
Sbjct: 977 MMRMGSSKANEVTMVSVICACAHLGALNRGKTVH 1010
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST--FSWNTILSGYA 88
K++H ++ + L ++ L +LI++YAK G I DA +VF VK T WN I+ G A
Sbjct: 1007 KTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLA 1066
Query: 89 RQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
G + ++L +F ++ D D +++ ++ + + A F + + P
Sbjct: 1067 SHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKESGAEP 1123
>AT4G37380.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:17572040-17573938 REVERSE
Length = 632
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 16 FLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK 75
F + LKS + K IH ++K GL Y+ L+++YAK G +V A+ VFD MP +
Sbjct: 131 FTFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPER 190
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
S S +++ YA+QG ++ A +FD + +RD VSW MI GY Q +A+ +F ++
Sbjct: 191 SLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLL 250
Query: 136 KD-KVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+ K P + T+ LS+C+ + AL+ GR IH+ V
Sbjct: 251 AEGKPKPDEITVVAALSACSQIGALETGRWIHVFV 285
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK-DKVSPSQFT 145
Y++ G L++A+ VF++ P +D V+W MI GY ++A+++F +M + P+ T
Sbjct: 304 YSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDIT 363
Query: 146 ITNVLSSCAALRALDIGRKI 165
L +CA ++ G +I
Sbjct: 364 FIGTLQACAHAGLVNEGIRI 383
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + IH + + ++ + LI++Y+K G + +A VF++ P K +WN +++G
Sbjct: 275 LETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAG 334
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMAC-----FENAIKMFVDMVKD 137
YA G AL +F+E+ + T + AC I++F M ++
Sbjct: 335 YAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQE 390
>AT5G56310.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:22802322-22803914 FORWARD
Length = 530
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F+L+ ++ ++ + IH Q++ G + S+++ LI +Y G + DAR +FDEM
Sbjct: 119 FPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEML 178
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIP--DRDSVSWTTMIVGYNQMACFENAIKMF 131
VK WN +L+GY + G++D+A + + +P R+ VSWT +I GY + AI++F
Sbjct: 179 VKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVF 238
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
M+ + V P + T+ VLS+CA L +L++G +I
Sbjct: 239 QRMLMENVEPDEVTLLAVLSACADLGSLELGERI 272
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ YA+ G + KAL VF+ + +R+ V+WTT+I G A+ MF MVK V
Sbjct: 289 NAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVR 348
Query: 141 PSQFTITNVLSSCAALRALDIGRKI 165
P+ T +LS+C+ + +D+G+++
Sbjct: 349 PNDVTFIAILSACSHVGWVDLGKRL 373
>AT2G13600.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:5671493-5673586 FORWARD
Length = 697
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 14 YAFLLQTNLKSKNLSV-CKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+A LL + +KSK ++ + +HA +IK G + I++ N LI+ Y+K G + D R VFD+M
Sbjct: 22 FAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKM 81
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
P ++ ++WN++++G + G LD+A +F +P+RD +W +M+ G+ Q E A+ F
Sbjct: 82 PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M K+ ++++ +VLS+C+ L ++ G ++H
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVH 175
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 27 LSVCKSIHAQMIKLG-LNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+ V + +H +++K L I L+N +++YAK I +AR +FD MP+++ + +++S
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
GYA A +F ++ +R+ VSW +I GY Q E A+ +F + ++ V P+ ++
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388
Query: 146 ITNVLSSCAALRALDIGRKIHLCV 169
N+L +CA L L +G + H+ V
Sbjct: 389 FANILKACADLAELHLGMQAHVHV 412
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 71/134 (52%), Gaps = 31/134 (23%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H+ + K +Y+ + L+++Y+K G + DA+ VFDEM ++ SWN++++ + + G
Sbjct: 174 VHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGP 233
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+AL VF QM M++ +V P + T+ +V+S+
Sbjct: 234 AVEALDVF-------------------QM------------MLESRVEPDEVTLASVISA 262
Query: 153 CAALRALDIGRKIH 166
CA+L A+ +G+++H
Sbjct: 263 CASLSAIKVGQEVH 276
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
F N+++ Y + G +++ VF ++ +RD VSW MI+G+ Q A+++F +M++
Sbjct: 428 FVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLES 487
Query: 138 KVSPSQFTITNVLSSCAALRALDIGR 163
P T+ VLS+C ++ GR
Sbjct: 488 GEKPDHITMIGVLSACGHAGFVEEGR 513
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFS------IYLTNNLINLYAKSGYIVDARN 67
+A +L+ L + H ++K G F I++ N+LI++Y K G + +
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448
Query: 68 VFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMAC 123
VF +M + SWN ++ G+A+ G ++AL +F E+ + D ++ ++
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGF 508
Query: 124 FENAIKMFVDMVKD-KVSP 141
E F M +D V+P
Sbjct: 509 VEEGRHYFSSMTRDFGVAP 527
>AT4G18840.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:10338719-10340356 REVERSE
Length = 545
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 32/188 (17%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F+L+ + IH IK GL +++ N L+N+Y +SGY AR V D MP
Sbjct: 143 FTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMP 202
Query: 74 VKSTFSWNTIL-------------------------------SGYARQGKLDKALHVFDE 102
V+ SWN++L SGYA G + +A VFD
Sbjct: 203 VRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDS 262
Query: 103 IPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS-PSQFTITNVLSSCAALRALDI 161
+P RD VSW M+ Y + C+ +++F M+ D P FT+ +VLS+CA+L +L
Sbjct: 263 MPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQ 322
Query: 162 GRKIHLCV 169
G +H+ +
Sbjct: 323 GEWVHVYI 330
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y++ GK+DKAL VF RD +W ++I + ++A+++F +MV + P+ T
Sbjct: 349 YSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITF 408
Query: 147 TNVLSSCAALRALDIGRKI 165
VLS+C + LD RK+
Sbjct: 409 IGVLSACNHVGMLDQARKL 427
>AT1G06145.1 | Symbols: EMB1444 | EMB1444 (EMBRYO DEFECTIVE 1444) |
chr1:1867129-1868862 REVERSE
Length = 577
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 31/168 (18%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYAR- 89
+S+ A + K G F + + LI+ Y+ +G I +AR VFDEMP + +W T++S Y R
Sbjct: 144 ESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRV 203
Query: 90 ------------------------------QGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
G L++A +F+++P +D +SWTTMI GY+
Sbjct: 204 LDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYS 263
Query: 120 QMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHL 167
Q + AI +F M+++ + P + T++ V+S+CA L L+IG+++H+
Sbjct: 264 QNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHM 311
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 31/140 (22%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + K +H ++ G +Y+ + L+++Y+K G
Sbjct: 303 LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCG-------------------------- 336
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
L++AL VF +P ++ W ++I G + A+KMF M + V P+ T
Sbjct: 337 -----SLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTF 391
Query: 147 TNVLSSCAALRALDIGRKIH 166
+V ++C +D GR+I+
Sbjct: 392 VSVFTACTHAGLVDEGRRIY 411
>AT5G59200.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:23888793-23890565 REVERSE
Length = 590
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 96/151 (63%)
Query: 16 FLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK 75
+++ + LK+ +L VC+ IHAQ++KLG S + ++ +Y KSG +V+A+ +FDEMP +
Sbjct: 174 YVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDR 233
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
+ +++ Y+ G + +AL +F ++ +D+V WT MI G + A+++F +M
Sbjct: 234 DHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQ 293
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ VS ++FT VLS+C+ L AL++GR +H
Sbjct: 294 MENVSANEFTAVCVLSACSDLGALELGRWVH 324
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
S F N +++ Y+R G +++A VF + D+D +S+ TMI G AI F DMV
Sbjct: 335 SNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMV 394
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKI 165
P+Q T+ +L++C+ LDIG ++
Sbjct: 395 NRGFRPNQVTLVALLNACSHGGLLDIGLEV 424
>AT3G26630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:9791572-9792939 REVERSE
Length = 455
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 86/153 (56%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F+++ L S ++ + +H IK G ++ N L++LY K G R VFD+MP
Sbjct: 122 FPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMP 181
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+S SW T+L G +LD A VF+++P R+ VSWT MI Y + + A ++F
Sbjct: 182 GRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRR 241
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M D V P++FTI N+L + L +L +GR +H
Sbjct: 242 MQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVH 274
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LLQ + + +LS+ + +H K G +L LI++Y+K G + DAR VFD M KS
Sbjct: 257 LLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKS 316
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIP-----DRDSVSWTTMIVGYNQMACFENAIKMF 131
+WN++++ G ++AL +F+E+ + D++++ ++ ++ ++ F
Sbjct: 317 LATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYF 376
Query: 132 VDMVK 136
M++
Sbjct: 377 TRMIQ 381
>AT3G62890.1 | Symbols: | binding | chr3:23246168-23247973 FORWARD
Length = 573
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 96/158 (60%), Gaps = 5/158 (3%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ FLL + +L + + HAQ++ GL+ ++ +L+N+Y+ G + A+ VFD+
Sbjct: 65 FPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSG 124
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K +WN++++ YA+ G +D A +FDE+P+R+ +SW+ +I GY ++ A+ +F +
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184
Query: 134 MVKDK-----VSPSQFTITNVLSSCAALRALDIGRKIH 166
M K V P++FT++ VLS+C L AL+ G+ +H
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVH 222
>AT3G15930.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5387444-5389690 FORWARD
Length = 687
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 82/143 (57%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
K K+ +CK +H + + S+ L N L+N YA G + A +F M + SW +
Sbjct: 248 KVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTS 307
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
I+ GY +G L A FD++P RD +SWT MI GY + CF ++++F +M + P
Sbjct: 308 IVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPD 367
Query: 143 QFTITNVLSSCAALRALDIGRKI 165
+FT+ +VL++CA L +L+IG I
Sbjct: 368 EFTMVSVLTACAHLGSLEIGEWI 390
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 32/154 (20%)
Query: 14 YAFLLQTNLKSKNLSVC-KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+ FLL + C K +H ++K GL ++Y+ N L+ +Y+ G + AR VFD
Sbjct: 137 FPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR 196
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
+ FSWN ++SGY N+M +E +I++ V
Sbjct: 197 CKEDVFSWNLMISGY-------------------------------NRMKEYEESIELLV 225
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+M ++ VSP+ T+ VLS+C+ ++ D+ +++H
Sbjct: 226 EMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ Y + G +KA VF ++ RD +WT M+VG + AIK+F M +
Sbjct: 407 NALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 141 PSQFTITNVLSSCAALRALDIGRK 164
P T VLS+C +D RK
Sbjct: 467 PDDITYLGVLSACNHSGMVDQARK 490
>AT2G42920.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:17858705-17860384 FORWARD
Length = 559
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 86/136 (63%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +H +IK GL ++ N ++++Y G +++A +F M +WN+++ G+A+
Sbjct: 146 RQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKC 205
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G +D+A ++FDE+P R+ VSW +MI G+ + F++A+ MF +M + V P FT+ ++L
Sbjct: 206 GLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLL 265
Query: 151 SSCAALRALDIGRKIH 166
++CA L A + GR IH
Sbjct: 266 NACAYLGASEQGRWIH 281
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IH +++ + + LI++Y K G I + NVF+ P K WN+++ G A G
Sbjct: 280 IHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGF 339
Query: 93 LDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK--VSPS--QF 144
++A+ +F E+ + DSVS+ ++ A + F ++K+K + PS +
Sbjct: 340 EERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFF-RLMKEKYMIEPSIKHY 398
Query: 145 TI-TNVLSSCAALRALD 160
T+ NVL L +
Sbjct: 399 TLMVNVLGGAGLLEEAE 415
>AT5G44230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:17814336-17816309 FORWARD
Length = 657
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 90/159 (56%), Gaps = 9/159 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKL-GLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
++ LL+ K+L++ + HAQ +L G F +Y+ N +I++Y K I AR VFDEM
Sbjct: 152 FSALLKACGTMKDLNLGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEM 210
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
P + SW +++ YAR G ++ A +F+ +P +D V+WT M+ G+ Q A + A++ F
Sbjct: 211 PERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFD 270
Query: 133 DMVKDKVSPSQFTITNVLSSCAAL-------RALDIGRK 164
M K + + T+ +S+CA L RA+ I +K
Sbjct: 271 RMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQK 309
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 34/155 (21%)
Query: 17 LLQTNLKSK-----NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
LL ++L SK NL+ K IH +++ GL+ S Y+ LI K G +D
Sbjct: 47 LLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDP------ 100
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
YAR+ V + + R+ WT +I GY F+ AI M+
Sbjct: 101 ---------------YARR--------VIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMY 137
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M K++++P FT + +L +C ++ L++GR+ H
Sbjct: 138 GCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFH 172
>AT4G37170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:17498580-17500655 REVERSE
Length = 691
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+Q +++ L K +H + G I + N L+ +YAK G +VDAR VFDEMP
Sbjct: 88 YCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMP 147
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ SWN +++GYA G L++A +FDE+ ++DS SWT M+ GY + E A+ ++
Sbjct: 148 NRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSL 207
Query: 134 MVKDKVS-PSQFTITNVLSSCAALRALDIGRKIH 166
M + S P+ FT++ +++ AA++ + G++IH
Sbjct: 208 MQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIH 241
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 60 GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
G+IV A DE+ W++++ Y + G +D+A ++FD+I ++D VSWT+MI Y
Sbjct: 242 GHIVRAGLDSDEV------LWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYF 295
Query: 120 QMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + + +F ++V P+++T VL++CA L ++G+++H
Sbjct: 296 KSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVH 342
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K +H M ++G + + +++L+++Y K G I A++V D P SW +++ G A+
Sbjct: 339 KQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQN 398
Query: 91 GKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
G+ D+AL FD + D V++ ++ E ++ F + +
Sbjct: 399 GQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITE 448
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
+F+ ++++ Y + G ++ A HV D P D VSWT++I G Q + A+K F ++K
Sbjct: 354 SFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLK 413
Query: 137 DKVSPSQFTITNVLSSCAALRALDIG 162
P T NVLS+C ++ G
Sbjct: 414 SGTKPDHVTFVNVLSACTHAGLVEKG 439
>AT1G13410.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT4G02750.1); Has 13539 Blast hits to 4793
proteins in 111 species: Archae - 0; Bacteria - 0;
Metazoa - 25; Fungi - 35; Plants - 13298; Viruses - 0;
Other Eukaryotes - 181 (source: NCBI BLink). |
chr1:4601526-4603174 FORWARD
Length = 474
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD 105
I L N +I+ Y + G +++AR++FD+MP + SWNT+L GYA G ++ VFD++P+
Sbjct: 90 IVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPE 149
Query: 106 RDSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPSQFTITNVLSSCAALRALDIGRK 164
R+ SW +I GY Q + F MV + V P+ T+T VLS+CA L A D G+
Sbjct: 150 RNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKW 209
Query: 165 IH 166
+H
Sbjct: 210 VH 211
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 31 KSIHAQMIKLGLN-FSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYAR 89
K +H LG N + + N LI++Y K G I A VF + + SWNT+++G A
Sbjct: 208 KWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAA 267
Query: 90 QGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
G +AL++F E+ + D V++ ++ M E+ + F M D F+
Sbjct: 268 HGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTD------FS 321
Query: 146 ITNVLSSCAAL 156
I + C +
Sbjct: 322 IMPEIEHCGCV 332
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%)
Query: 60 GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
G I A VF EM K+ W ++++GY L A FD P+RD V W TMI GY
Sbjct: 42 GVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYI 101
Query: 120 QMACFENAIKMFVDM 134
+M A +F M
Sbjct: 102 EMGNMLEARSLFDQM 116
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ Y + G ++ A+ VF I RD +SW TMI G A+ +F +M +S
Sbjct: 228 NALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGIS 287
Query: 141 PSQFTITNVLSSCAALRALDIG 162
P + T VL +C + ++ G
Sbjct: 288 PDKVTFVGVLCACKHMGLVEDG 309
>AT2G22410.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:9509035-9511080 FORWARD
Length = 681
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%)
Query: 41 GLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVF 100
GL +I L N L+++++K G I +AR +FD + ++ SW T++SGYAR G LD + +F
Sbjct: 287 GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLF 346
Query: 101 DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALD 160
D++ ++D V W MI G Q ++A+ +F +M P + T+ + LS+C+ L ALD
Sbjct: 347 DDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALD 406
Query: 161 IGRKIH 166
+G IH
Sbjct: 407 VGIWIH 412
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 31/139 (22%)
Query: 28 SVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGY 87
S+ I ++KL L ++ N I+++A G + +AR VFDE PV+ SWN +++GY
Sbjct: 173 SLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGY 232
Query: 88 ARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTIT 147
+ G+ +KA++V+ M + V P T+
Sbjct: 233 KKIGEAEKAIYVYKL-------------------------------MESEGVKPDDVTMI 261
Query: 148 NVLSSCAALRALDIGRKIH 166
++SSC+ L L+ G++ +
Sbjct: 262 GLVSSCSMLGDLNRGKEFY 280
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IH + K L+ ++ L +L+++YAK G I +A +VF + +++ ++ I+ G A G
Sbjct: 411 IHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGD 470
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
A+ F+E+ D +G C I+ D
Sbjct: 471 ASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRD 511
>AT1G74630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28030521-28032452 FORWARD
Length = 643
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 31/184 (16%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+AF+++ ++L +H Q +K GL +++ LI +Y G + AR VFDEM
Sbjct: 109 FAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMH 168
Query: 74 -------------------------------VKSTFSWNTILSGYARQGKLDKALHVFDE 102
V++ SWN +L+GY + G+L+ A +F E
Sbjct: 169 QPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSE 228
Query: 103 IPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
+P RD VSW+TMIVG F + F ++ + +SP++ ++T VLS+C+ + + G
Sbjct: 229 MPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFG 288
Query: 163 RKIH 166
+ +H
Sbjct: 289 KILH 292
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTF-SWN 81
+S + K +H + K G ++ + + N LI++Y++ G + AR VF+ M K SW
Sbjct: 281 QSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWT 340
Query: 82 TILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
++++G A G+ ++A+ +F+E+ D +S+ +++ + E F +M +
Sbjct: 341 SMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKR 399
>AT2G36980.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15531161-15533038 FORWARD
Length = 625
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%)
Query: 24 SKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
S N+ + +HA M+K G + ++ N++++ Y K G DA + + V + SWN+I
Sbjct: 218 SSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSI 277
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
+ + G+ +KAL VF P+++ V+WTTMI GY + E A++ FV+M+K V
Sbjct: 278 IDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDH 337
Query: 144 FTITNVLSSCAALRALDIGRKIHLCV 169
F VL +C+ L L G+ IH C+
Sbjct: 338 FAYGAVLHACSGLALLGHGKMIHGCL 363
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 85/160 (53%), Gaps = 5/160 (3%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D Y+F +L T N+ + I + +I+ G S+ + N+LI++Y K + A VF
Sbjct: 69 DDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVF 128
Query: 70 DEMPVKS--TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENA 127
+M S +W ++L Y + + AL VF E+P R + +W MI G+ E+
Sbjct: 129 RDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESC 188
Query: 128 IKMFVDMVKDKVSPSQFTITNVLSSCAALRA-LDIGRKIH 166
+ +F +M++ + P +T ++++++C+A + + GR +H
Sbjct: 189 LSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVH 228
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
++ A+ G++ A VFD +P+ D+V+W TM+ Y+++ + AI +F + P
Sbjct: 11 IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDD 70
Query: 144 FTITNVLSSCAALRALDIGRKIH 166
++ T +LS+CA+L + GRKI
Sbjct: 71 YSFTAILSTCASLGNVKFGRKIQ 93
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH +I G Y+ N L+NLYAK G I +A F ++ K SWNT+L +
Sbjct: 357 KMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVH 416
Query: 91 GKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
G D+AL ++D + D+V++ ++ + E +F MVKD P
Sbjct: 417 GLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIP 471
>AT4G22760.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:11958477-11962870 FORWARD
Length = 889
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L+ K +N+ K IHAQ +K GL +Y+ L+ LY++ GYI A+ FD++ K+
Sbjct: 379 VLRACGKMENMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKN 438
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
T SWN++L GY G+LD+A VFD+IP++D+VSW +I Y + NA +F M
Sbjct: 439 TVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAM 496
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N LI Y + AR FD MP K+ SW T++SGY + G + A +F + +D +
Sbjct: 505 NILIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKL 564
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKDK--VSPSQFTITNVLSSCAALRALDIG 162
+ MI Y Q ++A+K+F M++ + P + T+++V+S+ + L G
Sbjct: 565 VYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFG 619
>AT1G04840.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:1362867-1364962 REVERSE
Length = 665
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 80/122 (65%)
Query: 45 SIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIP 104
SI + N LIN Y ++ + A +F MP +++ SW+T++ GY G+L++A +F+ +P
Sbjct: 195 SILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMP 254
Query: 105 DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRK 164
+++ VSWTT+I G++Q +E AI + +M++ + P+++TI VLS+C+ AL G +
Sbjct: 255 EKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIR 314
Query: 165 IH 166
IH
Sbjct: 315 IH 316
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFD---EMPVKSTFSWNTILSG-Y 87
S + +M++ GL + Y +++ +KSG + + + +K + T L Y
Sbjct: 279 STYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMY 338
Query: 88 ARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTIT 147
A+ G+LD A VF + +D +SWT MI G+ F AI+ F M+ P +
Sbjct: 339 AKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFL 398
Query: 148 NVLSSCAALRALDIG 162
VL++C +D+G
Sbjct: 399 AVLTACLNSSEVDLG 413
>AT3G29230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:11188803-11190605 FORWARD
Length = 600
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 33/154 (21%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYA---------------- 57
Y FLL+ L V K +H + KLGL+ IY+ N LI+ Y+
Sbjct: 120 YPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEK 179
Query: 58 -----------------KSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVF 100
K+G + DAR +FDEMP + SWNT+L GYAR ++ KA +F
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELF 239
Query: 101 DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
+++P+R++VSW+TM++GY++ E A MF M
Sbjct: 240 EKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM 273
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 36 QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQG 91
QM+ GL F +++ +SG + + + + + N +L YA+ G
Sbjct: 305 QMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCG 364
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
L KA VF++IP +D VSW TM+ G + AI++F M ++ + P + T VL
Sbjct: 365 NLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLC 424
Query: 152 SCAALRALDIG 162
SC +D G
Sbjct: 425 SCNHAGLIDEG 435
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L +S LS+ IH+ + + L + Y+ N L+++YAK G + A +VF+++P K
Sbjct: 321 ILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFV 132
SWNT+L G G +A+ +F + D V++ ++ N + I F
Sbjct: 381 LVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFY 440
Query: 133 DMVK 136
M K
Sbjct: 441 SMEK 444
>AT1G05750.1 | Symbols: PDE247, CLB19 | PDE247 (pigment defective
247) | chr1:1721523-1723025 FORWARD
Length = 500
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 33 IHAQMIKLGLNFS-IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQG 91
+H KLGL+ + + + +I +Y+K G AR VFD M K++ +WNT++ GY R G
Sbjct: 95 LHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSG 154
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
++D A +FD++P+RD +SWT MI G+ + E A+ F +M V P I L+
Sbjct: 155 QVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALN 214
Query: 152 SCAALRALDIGRKIH 166
+C L AL G +H
Sbjct: 215 ACTNLGALSFGLWVH 229
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 20 TNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS 79
TNL + LS +H ++ ++ ++N+LI+LY + G + AR VF M ++ S
Sbjct: 217 TNLGA--LSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVS 274
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMV 135
WN+++ G+A G ++L F ++ ++ D+V++T + + + E ++ F M
Sbjct: 275 WNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMK 334
Query: 136 KD-KVSP 141
D ++SP
Sbjct: 335 CDYRISP 341
>AT1G09190.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: shoot apex, sperm cell,
embryo, flower, seed; EXPRESSED DURING: petal
differentiation and expansion stage, D bilateral stage,
E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT5G56310.1); Has
12606 Blast hits to 4809 proteins in 101 species: Archae
- 0; Bacteria - 0; Metazoa - 13; Fungi - 33; Plants -
12368; Viruses - 0; Other Eukaryotes - 192 (source: NCBI
BLink). | chr1:2966263-2967717 REVERSE
Length = 484
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 83/153 (54%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
YA LL++ +L K +H ++I+ G + + ++ LY G + DA+ VFDEM
Sbjct: 105 YAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMS 164
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
++ WN ++ G+ G +++ LH+F ++ +R VSW +MI ++ A+++F +
Sbjct: 165 ERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCE 224
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M+ P + T+ VL A+L LD G+ IH
Sbjct: 225 MIDQGFDPDEATVVTVLPISASLGVLDTGKWIH 257
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 33/141 (23%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLT--NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
L K IH+ GL F ++T N L++ Y KSG + A +F +M ++ SWNT++
Sbjct: 250 LDTGKWIHSTAESSGL-FKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLI 308
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
SG A GK + + +FD + + + KV+P++
Sbjct: 309 SGSAVNGKGEFGIDLFDAMIE------------------------------EGKVAPNEA 338
Query: 145 TITNVLSSCAALRALDIGRKI 165
T VL+ C+ ++ G ++
Sbjct: 339 TFLGVLACCSYTGQVERGEEL 359
>AT1G17630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6064525-6066720 FORWARD
Length = 731
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
+C++ H Q+I++GL ++++ N L+ LY K+G + DA N+F EMPV++ SWN ++ G
Sbjct: 174 FGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKG 233
Query: 87 YARQGKLDKALHVFD----EIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
++++ + A+ +F+ E D V+WT+++ ++Q FE+ +K F M + S
Sbjct: 234 FSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVS 293
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
+ S CA L AL I K+H
Sbjct: 294 GEALAVFFSVCAELEALSIAEKVH 317
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
LS+ + +H +IK G + N LI++Y K G + DA ++F ++ K SWN++++
Sbjct: 310 LSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITS 369
Query: 87 YARQGKLDKALHVFDEIPDRDS--------VSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
+ GKLD+AL +F E+ + + V+WT++I G N +++++ F M K
Sbjct: 370 FVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSK 429
Query: 139 VSPSQFTITNVLSSCAALRALDIGRKIH 166
V + TI +LS CA L AL++GR+IH
Sbjct: 430 VLANSVTICCILSICAELPALNLGREIH 457
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L++ + IH +I+ ++ +I + N L+N+YAK G + + VF+ + K SWN+I+ G
Sbjct: 450 LNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKG 509
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSP 141
Y G +KAL +FD + D ++ ++ + E ++F M K + P
Sbjct: 510 YGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEP 569
Query: 142 SQ 143
Q
Sbjct: 570 QQ 571
>AT1G25360.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:8894428-8896800 FORWARD
Length = 790
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + K +HA +++ +FS + N+L++LY K G +AR +F++MP K SWN +LSG
Sbjct: 302 LQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSG 360
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y G + +A +F E+ +++ +SW MI G + E +K+F M ++ P +
Sbjct: 361 YVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAF 420
Query: 147 TNVLSSCAALRALDIGRKIH 166
+ + SCA L A G++ H
Sbjct: 421 SGAIKSCAVLGAYCNGQQYH 440
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 30 CKSIHAQMIKLGLNFSIYLTNNLINLYAK----SGYIVDARNVFDEMPVKSTFSWNTILS 85
C HA +K G + ++N L+++Y+K + AR VFDE+ K SW T+++
Sbjct: 168 CVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMT 227
Query: 86 GYARQGKLDKALHVFDEIPDR-DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
GY + G D + + + D V++ MI GY ++ A++M MV + +F
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T +V+ +CA L +G+++H
Sbjct: 288 TYPSVIRACATAGLLQLGKQVH 309
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 22 LKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWN 81
L+ +L + +++H +I G ++ N LI++Y KS + AR +FDE+ +
Sbjct: 25 LRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIART 84
Query: 82 TILSGYARQGKLDKALHVFDEIPD--RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
T++SGY G + A VF++ P RD+V + MI G++ +AI +F M +
Sbjct: 85 TMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGF 144
Query: 140 SPSQFTITNVLSSCA 154
P FT +VL+ A
Sbjct: 145 KPDNFTFASVLAGLA 159
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 31/134 (23%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ HAQ++K+G + S+ N LI +YAK G + +AR VF MP + SWN +++ +
Sbjct: 437 QQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G +A+ V++E M+K + P + T+ VL
Sbjct: 497 GHGAEAVDVYEE-------------------------------MLKKGIRPDRITLLTVL 525
Query: 151 SSCAALRALDIGRK 164
++C+ +D GRK
Sbjct: 526 TACSHAGLVDQGRK 539
>AT1G33350.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:12090071-12091687 REVERSE
Length = 538
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKS-GYIVDARNVFDEMPVKSTFSWNTILSGYARQG 91
+H + K G + + + L++ YA S +I AR +FDEM ++ SW +LSGYAR G
Sbjct: 148 VHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSG 207
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK-VSPSQFTITNVL 150
+ A+ +F+++P+RD SW ++ Q F A+ +F M+ + + P++ T+ VL
Sbjct: 208 DISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVL 267
Query: 151 SSCAALRALDIGRKIH 166
S+CA L + + IH
Sbjct: 268 SACAQTGTLQLAKGIH 283
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 52/81 (64%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
++ L + K IHA + L+ ++++N+L++LY K G + +A +VF KS +WN+
Sbjct: 272 QTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNS 331
Query: 83 ILSGYARQGKLDKALHVFDEI 103
+++ +A G+ ++A+ VF+E+
Sbjct: 332 MINCFALHGRSEEAIAVFEEM 352
>AT4G02750.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:1221116-1223461 REVERSE
Length = 781
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 78/117 (66%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N ++ Y + + A+ +FD MP ++ +WNT+++GYA+ GK+ +A ++FD++P RD V
Sbjct: 316 NAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPV 375
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
SW MI GY+Q A+++FV M ++ ++ + ++ LS+CA + AL++G+++H
Sbjct: 376 SWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLH 432
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 43 NFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDE 102
N+++ N L+ + K IV+AR FD M V+ SWNTI++GYA+ GK+D+A +FDE
Sbjct: 216 NWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE 275
Query: 103 IPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
P +D +WT M+ GY Q E A ++F M
Sbjct: 276 SPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I YA+SG I +AR +FDE PV+ F+W ++SGY + +++A +FD++P+R+ V
Sbjct: 254 NTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEV 313
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITN 148
SW M+ GY Q E A ++F M VS IT
Sbjct: 314 SWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITG 352
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I+ Y ++G AR +FDEMP + SWN ++ GY R L KA +F+ +P+RD
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 110 SWTTMIVGYNQMACFENAIKMFVDM 134
SW TM+ GY Q C ++A +F M
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRM 183
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I Y ++ + AR +F+ MP + SWNT+LSGYA+ G +D A VFD +P+++ V
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV 189
Query: 110 SWTTMIVGYNQMACFENAIKMF 131
SW ++ Y Q + E A +F
Sbjct: 190 SWNALLSAYVQNSKMEEACMLF 211
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
++ + KS ++K G + I N I+ Y ++G +A VF MP S+ S+N
Sbjct: 42 RATQTQIQKSQTKPLLKCG-DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNG 100
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
++SGY R G+ + A +FDE+P+RD VSW MI GY + A ++F M + V
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV 157
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 39/149 (26%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKAL------------ 97
N +++ YA++G + DAR+VFD MP K+ SWN +LS Y + K+++A
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220
Query: 98 -------------------HVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
FD + RD VSW T+I GY Q + A ++F +
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE----- 275
Query: 139 VSPSQ--FTITNVLSSCAALRALDIGRKI 165
SP Q FT T ++S R ++ R++
Sbjct: 276 -SPVQDVFTWTAMVSGYIQNRMVEEAREL 303
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 31/138 (22%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + K +H +++K G ++ N L+ +Y K G I +A ++
Sbjct: 425 LELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL------------------ 466
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
F E+ +D VSW TMI GY++ E A++ F M ++ + P T+
Sbjct: 467 -------------FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513
Query: 147 TNVLSSCAALRALDIGRK 164
VLS+C+ +D GR+
Sbjct: 514 VAVLSACSHTGLVDKGRQ 531
>AT5G61800.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24830054-24831553 REVERSE
Length = 499
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
K+ +L++ K++H Q ++ GL ++ N LI +Y+ I A +FDE P + ++N
Sbjct: 129 KNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNV 188
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
++ G + ++ +A +FD +P RD VSW ++I GY QM AIK+F +MV + P
Sbjct: 189 LIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPD 248
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
I + LS+CA G+ IH
Sbjct: 249 NVAIVSTLSACAQSGDWQKGKAIH 272
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K+IH + L +L L++ YAK G+I A +F+ K+ F+WN +++G A
Sbjct: 269 KAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMH 328
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDM 134
G + + F ++ D V++ +++VG + + A +F M
Sbjct: 329 GNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQM 376
>AT4G20770.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:11130762-11132984 REVERSE
Length = 740
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%)
Query: 40 LGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHV 99
+G+ YL N L++LY + G AR VFDEM V+ +SWN L+ + G L +A V
Sbjct: 1 MGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEV 60
Query: 100 FDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRAL 159
FD +P+RD VSW MI + E A+ ++ MV D PS+FT+ +VLS+C+ +
Sbjct: 61 FDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDG 120
Query: 160 DIGRKIH 166
G + H
Sbjct: 121 VFGMRCH 127
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 35/171 (20%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYA-- 88
K IH ++LG ++L N+L+ +YAK+ + A +F EMP + SWN ++ G+
Sbjct: 235 KQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQE 294
Query: 89 ---------------------------------RQGKLDKALHVFDEIPDRDSVSWTTMI 115
R G ++ +F IP +W M+
Sbjct: 295 YRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAML 354
Query: 116 VGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
GY+ +E AI F M + P + T++ +LSSCA LR L+ G++IH
Sbjct: 355 SGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIH 405
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 54 NLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTT 113
L KSGY+ D +F + Y + G++D A FD + +++V W
Sbjct: 509 GLVVKSGYVSD------------SFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNE 556
Query: 114 MIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
MI GY + A+ ++ M+ P T +VL++C+ ++ G +I
Sbjct: 557 MIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEI 608
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 34 HAQMIKLGLNFSIYLTNNLINLYAKSGYIVD-ARNVFDEMPVKSTFSWNTILSGYARQGK 92
H +K GL+ +I++ N L+++YAK G+IVD VF+ + + S+ ++ G AR+ K
Sbjct: 127 HGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENK 186
Query: 93 LDKALHVF 100
+ +A+ +F
Sbjct: 187 VLEAVQMF 194
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ H ++K G ++ L ++Y K G I AR FD + K+T WN ++ GY
Sbjct: 505 RQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHN 564
Query: 91 GKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
G+ D+A+ ++ ++ D +++ +++ + E +++ M +
Sbjct: 565 GRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQR 614
>AT3G02330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:473881-476592 REVERSE
Length = 861
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
K L + K HA MI G + ++ N L+ +Y S V A VFD+MP++ SWN
Sbjct: 18 KQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNK 77
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
+++GY++ + KA F+ +P RD VSW +M+ GY Q +I++FVDM ++ +
Sbjct: 78 MINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFD 137
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
T +L C+ L +G +IH
Sbjct: 138 GRTFAIILKVCSFLEDTSLGMQIH 161
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 35/151 (23%)
Query: 14 YAFLLQT--NLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
YA +L T NL S L K IHAQ+IK L +Y+ + L+++Y+K G + D+R +F++
Sbjct: 564 YATVLDTCANLASAGLG--KQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEK 621
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
+ +WN ++ GYA GK E AI++F
Sbjct: 622 SLRRDFVTWNAMICGYAHHGK-------------------------------GEEAIQLF 650
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
M+ + + P+ T ++L +CA + +D G
Sbjct: 651 ERMILENIKPNHVTFISILRACAHMGLIDKG 681
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
+ +L YA+ + ++L VF IP+++SVSW+ +I G Q A+K F +M K
Sbjct: 177 SALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAG 236
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
SQ +VL SCAAL L +G ++H
Sbjct: 237 VSQSIYASVLRSCAALSELRLGGQLH 262
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 32/142 (22%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
K LS I+ IK L+ + + N I++Y K + +A VFDEM + SWN I+
Sbjct: 354 KGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAII 413
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
+ + + GK GY + +FV M++ ++ P +F
Sbjct: 414 AAHEQNGK------------------------GYETLF-------LFVSMLRSRIEPDEF 442
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T ++L +C +L G +IH
Sbjct: 443 TFGSILKACTG-GSLGYGMEIH 463
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQG 91
IH+ ++K G+ + + +LI++Y+K G I +A + ++ S G
Sbjct: 461 EIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------G 509
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
+++ + ++ VSW ++I GY E+A +F M++ ++P +FT VL
Sbjct: 510 TMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLD 569
Query: 152 SCAALRALDIGRKIH 166
+CA L + +G++IH
Sbjct: 570 TCANLASAGLGKQIH 584
>AT5G19020.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:6352771-6357083 REVERSE
Length = 939
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 84/137 (61%)
Query: 30 CKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYAR 89
C+ + + IKL L ++++ NL+++Y + DAR +FDEMP ++ +WN +L+GY++
Sbjct: 446 CRMLQSLAIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSK 505
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
G +++A +FD+I ++D VSW TMI G + + A+ + +M++ + PS+ + ++
Sbjct: 506 AGLIEQAEELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYTEMLRCGMKPSEVMMVDL 565
Query: 150 LSSCAALRALDIGRKIH 166
LS+ A G ++H
Sbjct: 566 LSASARSVGSSKGLQLH 582
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 86/142 (60%)
Query: 18 LQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST 77
L + S +++ + IH +++K GL+ + Y+ N+++N+YAK + DA +VF + +
Sbjct: 302 LGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDHAKLDS 361
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
S+N ++ GY R +L AL +FD +P+R VS+TT+I GY Q + A+++F +M
Sbjct: 362 ASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFREMRNL 421
Query: 138 KVSPSQFTITNVLSSCAALRAL 159
+ ++ T+ V+S+C+ L +
Sbjct: 422 GIMLNEVTLATVISACSHLGGI 443
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL + +S S +H ++K G + +L +I+ YA S I A F+
Sbjct: 565 LLSASARSVGSSKGLQLHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDH 624
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV- 135
S N +++G+ + G +++A VFD+ D+D SW MI GY Q + A+ +F +M+
Sbjct: 625 IASRNALIAGFVKNGMVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMIS 684
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+V P T+ +V S+ ++L +L+ G++ H
Sbjct: 685 SSQVKPDAITMVSVFSAISSLGSLEEGKRAH 715
>AT1G68930.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:25918314-25920545 FORWARD
Length = 743
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L+ + + ++S+ K IH Q+IKLG + + + L+ +YA G I DA+ VF + ++
Sbjct: 145 MLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRN 204
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
T +N+++ G G ++ AL +F + ++DSVSW MI G Q + AI+ F +M
Sbjct: 205 TVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKV 263
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+ Q+ +VL +C L A++ G++IH C+
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACI 296
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 21 NLKSKNLS-VCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS 79
L ++N S K IH +I+ +L NN+++ YA AR VFD +P + FS
Sbjct: 15 GLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFS 74
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD-K 138
WN +L Y++ G + + F+++PDRD V+W +I GY+ A+K + M++D
Sbjct: 75 WNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFS 134
Query: 139 VSPSQFTITNVLSSCAALRALDIGRKIH 166
+ ++ T+ +L ++ + +G++IH
Sbjct: 135 ANLTRVTLMTMLKLSSSNGHVSLGKQIH 162
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IHA +I+ IY+ + LI++Y K + A+ VFD M K+
Sbjct: 290 KQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV------------- 336
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
VSWT M+VGY Q E A+K+F+DM + + P +T+ +
Sbjct: 337 ------------------VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAI 378
Query: 151 SSCAALRALDIGRKIH 166
S+CA + +L+ G + H
Sbjct: 379 SACANVSSLEEGSQFH 394
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N++++ Y + G +D + +F+E+ RD+VSWT M+ Y Q I++F MV+ +
Sbjct: 410 NSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLK 469
Query: 141 PSQFTITNVLSSCAALRALDIGRK 164
P T+T V+S+C+ ++ G++
Sbjct: 470 PDGVTLTGVISACSRAGLVEKGQR 493
>AT5G55740.1 | Symbols: CRR21 | CRR21 (chlororespiratory reduction
21) | chr5:22561941-22564433 REVERSE
Length = 830
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 86/191 (45%), Gaps = 39/191 (20%)
Query: 15 AFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
A L+ +++NL + K + I+ I L + ++++YAK G IVDA+ VFD
Sbjct: 379 ATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVE 438
Query: 75 KSTFSWNTILSGYARQGKLDKALHVF----------------------------DEIPD- 105
K WNT+L+ YA G +AL +F DE D
Sbjct: 439 KDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDM 498
Query: 106 ----------RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAA 155
+ +SWTTM+ G Q C E AI M + + P+ F+IT LS+CA
Sbjct: 499 FLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAH 558
Query: 156 LRALDIGRKIH 166
L +L IGR IH
Sbjct: 559 LASLHIGRTIH 569
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +H ++K GL +++ ++L ++Y K G
Sbjct: 193 RGVHGYVVKSGLEDCVFVASSLADMYGKCGV----------------------------- 223
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
LD A VFDEIPDR++V+W ++VGY Q E AI++F DM K V P++ T++ L
Sbjct: 224 --LDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCL 281
Query: 151 SSCAALRALDIGRKIH 166
S+ A + ++ G++ H
Sbjct: 282 SASANMGGVEEGKQSH 297
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 12 DLYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
++Y +LQ + ++LS K IHA+++K G + YA++ YI +F
Sbjct: 71 EIYGEILQGCVYERDLSTGKQIHARILKNG------------DFYARNEYIETKLVIF-- 116
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
YA+ L+ A +F ++ R+ SW +I ++ E A+ F
Sbjct: 117 ---------------YAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGF 161
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
V+M+++++ P F + NV +C AL+ GR +H
Sbjct: 162 VEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVH 196
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K HA I G+ L +L+N Y K G I A VFD M K +WN I+SGY +Q
Sbjct: 294 KQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQ 353
Query: 91 GKLDKALHV 99
G ++ A+++
Sbjct: 354 GLVEDAIYM 362
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
++L+ Y + G ++ A VFD + ++D V+W +I GY Q E+AI M M +K+
Sbjct: 314 SLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKY 373
Query: 142 SQFTITNVLSSCAALRALDIGRKIH 166
T+ ++S+ A L +G+++
Sbjct: 374 DCVTLATLMSAAARTENLKLGKEVQ 398
>AT1G31430.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:11254025-11255737 REVERSE
Length = 570
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
KNL + + I+ + + S+ + N L++++ K G + AR VFD M K+ W +++
Sbjct: 162 KNLEIGERIY-RFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMV 220
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
GY G++D+A +F+ P +D V WT M+ GY Q F+ A+++F M + P F
Sbjct: 221 FGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNF 280
Query: 145 TITNVLSSCAALRALDIGRKIH 166
+ ++L+ CA AL+ G+ IH
Sbjct: 281 VLVSLLTGCAQTGALEQGKWIH 302
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 30/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +H +K GL F Y++N+L+ +YA G I VFDEMP + SWN ++S Y
Sbjct: 66 EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G+ + A+ VF + ++ + + TI + L
Sbjct: 126 GRFEDAIGVFKRMSQESNLKF------------------------------DEGTIVSTL 155
Query: 151 SSCAALRALDIGRKIH 166
S+C+AL+ L+IG +I+
Sbjct: 156 SACSALKNLEIGERIY 171
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 60 GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
GYI + R D++ ++ YA+ G ++ AL VF EI +RD+ SWT++I G
Sbjct: 303 GYINENRVTVDKVV------GTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLA 356
Query: 120 QMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
A+ ++ +M V T VL++C + GRKI
Sbjct: 357 MNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKI 402
>AT2G35030.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14761080-14762963 REVERSE
Length = 627
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I YA++ I +A +F MP + SWNT+++G+ R +++KA +FD +P+++ +
Sbjct: 237 NAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVI 296
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPSQFTITNVLSSCAALRALDIGRKIH 166
SWTTMI GY + E A+ +F M++D V P+ T ++LS+C+ L L G++IH
Sbjct: 297 SWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIH 354
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 22 LKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWN 81
L+SK LS+ + + +M + ++ N +I+ YA+SG I A +FDEMP ++ SWN
Sbjct: 120 LRSKQLSIAEMLFQEMPER----NVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWN 175
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
+++ ++G++D+A+++F+ +P RD VSWT M+ G + + A ++F
Sbjct: 176 SMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLF 225
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 52 LINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSW 111
+++ Y +S + A +F EMP ++ SWNT++ GYA+ G++DKAL +FDE+P+R+ VSW
Sbjct: 115 MVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSW 174
Query: 112 TTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+M+ Q + A+ +F M + V + T ++ A +D R++ C+
Sbjct: 175 NSMVKALVQRGRIDEAMNLFERMPRRDV----VSWTAMVDGLAKNGKVDEARRLFDCM 228
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N+++ + G I +A N+F+ MP + SW ++ G A+ GK+D+A +FD +P+R+ +
Sbjct: 175 NSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNII 234
Query: 110 SWTTMIVGYNQMACFENAIKMF 131
SW MI GY Q + A ++F
Sbjct: 235 SWNAMITGYAQNNRIDEADQLF 256
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 51 NLINLYAKSGYIVDARNVFDEM-PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
++I Y K G + +AR +FD + K+ +W ++SGY R +L A +F E+P+R+ V
Sbjct: 82 HVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVV 141
Query: 110 SWTTMIVGYNQMACFENAIKMFVDM 134
SW TMI GY Q + A+++F +M
Sbjct: 142 SWNTMIDGYAQSGRIDKALELFDEM 166
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 68/130 (52%), Gaps = 15/130 (11%)
Query: 27 LSVCKS----IHAQMIKLGLNFSIY-----LTNNLINLYAKSGYIVDARNVFDEMPV--K 75
LS C + Q I ++ S++ +T+ L+N+Y+KSG ++ AR +FD V +
Sbjct: 338 LSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQR 397
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMF 131
SWN++++ YA G +A+ +++++ +V++ ++ + E ++ F
Sbjct: 398 DLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFF 457
Query: 132 VDMVKDKVSP 141
D+V+D+ P
Sbjct: 458 KDLVRDESLP 467
>AT5G16860.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:5543834-5546386 FORWARD
Length = 850
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 90/153 (58%), Gaps = 10/153 (6%)
Query: 18 LQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST 77
L T+ K L C ++ ++MI+ ++++ N L+++YAK G + +A VF M VK
Sbjct: 242 LGTHSLGKQLH-CFAVTSEMIQ-----NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDV 295
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVD 133
SWN +++GY++ G+ + A+ +F+++ + D V+W+ I GY Q A+ +
Sbjct: 296 VSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQ 355
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M+ + P++ T+ +VLS CA++ AL G++IH
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 30/153 (19%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F+ + + ++ +S HA + G ++++ N L+ +Y++ + DAR VFDEM
Sbjct: 130 FPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMS 189
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
V SWN+I+ YA+ GK AL +F + N+ C
Sbjct: 190 VWDVVSWNSIIESYAKLGKPKVALEMFSRMT--------------NEFGC---------- 225
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
P T+ NVL CA+L +G+++H
Sbjct: 226 ------RPDNITLVNVLPPCASLGTHSLGKQLH 252
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 81 NTILSGYARQGKLDKALHVFDEIP--DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD- 137
N ++ YA+ K+D A +FD + +RD V+WT MI GY+Q A+++ +M ++
Sbjct: 411 NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470
Query: 138 -KVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ P+ FTI+ L +CA+L AL IG++IH
Sbjct: 471 CQTRPNAFTISCALVACASLAALRIGKQIH 500
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 27 LSVCKSIHAQMIKLGLN-FSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
L + K IHA ++ N ++++N LI++YAK G I DAR VFD M K+ +W ++++
Sbjct: 493 LRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT 552
Query: 86 GYARQGKLDKALHVFDEI 103
GY G ++AL +FDE+
Sbjct: 553 GYGMHGYGEEALGIFDEM 570
>AT3G21470.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:7563746-7565074 FORWARD
Length = 442
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 69/115 (60%)
Query: 52 LINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSW 111
++ +Y + + DAR F+++P K+ F W+ ++SGY R G + +A +F + RD V W
Sbjct: 102 MLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIW 161
Query: 112 TTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
T+I GY Q ++AI F +M + P T++++LS+CA LD+GR++H
Sbjct: 162 NTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVH 216
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 48 LTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD-R 106
+ ++LI++Y K G +V AR VFDEMP ++ +WN ++ GY G A +F+EI R
Sbjct: 2 VGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCR 61
Query: 107 DSVSWTTMIVGYNQMACFENAIKMFVDM 134
++V+W MI GY + E A ++F M
Sbjct: 62 NTVTWIEMIKGYGKRIEIEKARELFERM 89
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L +S L V + +H+ + G+ + +++N LI++YAK G + +A +VF+ + V+S
Sbjct: 199 ILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRS 258
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPD----RDSVSWTTMIVGYNQMACFENAIKMFV 132
N+++S A GK +AL +F + D +++ ++ +K+F
Sbjct: 259 VACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFS 318
Query: 133 DMVKDKVSPS 142
+M V P+
Sbjct: 319 EMKTQDVKPN 328
>AT3G22690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:8020757-8024534 REVERSE
Length = 978
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
+N+ KS H +++ G + N LI++Y K A +FD M K+ +WN+I+
Sbjct: 351 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 410
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM-VKDKVSPSQ 143
+GY G++D A F+ +P+++ VSW T+I G Q + FE AI++F M ++ V+
Sbjct: 411 AGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470
Query: 144 FTITNVLSSCAALRALDIGRKIH 166
T+ ++ S+C L ALD+ + I+
Sbjct: 471 VTMMSIASACGHLGALDLAKWIY 493
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K F N+++ YA G+LD A VFDE+ +R+ VSWT+MI GY + ++A+ +F
Sbjct: 166 AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFR 225
Query: 134 MVKDK-VSPSQFTITNVLSSCAALRALDIGRKIH 166
MV+D+ V+P+ T+ V+S+CA L L+ G K++
Sbjct: 226 MVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
>AT1G53600.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:20001263-20005795 FORWARD
Length = 839
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 88/165 (53%), Gaps = 31/165 (18%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF----------------------- 69
IH + ++ L F ++L N+L+++Y+K GY+ +A+ VF
Sbjct: 297 IHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQ 356
Query: 70 --------DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQM 121
++MP K SW ++ G++ +G++ K + +F +P++D+++WT MI +
Sbjct: 357 ISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSN 416
Query: 122 ACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+E A+ F M++ +V P+ +T ++VLS+ A+L L G +IH
Sbjct: 417 GYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 49 TNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDS 108
+N L++ Y ++G +A VF M VK S ++++ GY + G++ A +FD + +R+
Sbjct: 180 SNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNV 239
Query: 109 VSWTTMIVGYNQMACFENAIKMFVDMVKDK-VSPSQFTITNVLSSCAALRALDIGRKIH 166
++WT MI GY + FE+ +F+ M ++ V + T+ + +C G +IH
Sbjct: 240 ITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIH 298
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 45 SIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIP 104
+I+ N+ I+ +A++G + +A +F +M +S SW ++S YA GK+ KA VFDE+P
Sbjct: 49 AIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMP 108
Query: 105 DRDSVSWTTMIVGYNQMAC-FENAIKMFVDM 134
R + S+ MI + C A ++F D+
Sbjct: 109 VRVTTSYNAMITAMIKNKCDLGKAYELFCDI 139
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 18 LQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST 77
+ + ++ NL ++I QM N SI +I+ YA++G + A VFDEMPV+ T
Sbjct: 57 ISKHARNGNLQEAEAIFRQMS----NRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVT 112
Query: 78 FSWNTILSGYAR-QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
S+N +++ + + L KA +F +IP++++VS+ TMI G+ + F+ A ++ +
Sbjct: 113 TSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169
>AT3G49140.2 | Symbols: | EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is: EMB2758
(embryo defective 2758) (TAIR:AT4G33990.1). |
chr3:18213981-18217848 REVERSE
Length = 896
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 39/194 (20%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D Y F +L+ S + + + IH K+GL+ ++++ N L+++Y K G++ +AR V
Sbjct: 139 DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD------------------------ 105
DEM + SWN+++ GYA+ + D AL V E+
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN 258
Query: 106 -------------RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+ VSW MI Y + A A++++ M D P +IT+VL +
Sbjct: 259 VMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPA 318
Query: 153 CAALRALDIGRKIH 166
C AL +G+KIH
Sbjct: 319 CGDTSALSLGKKIH 332
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
LS+ K IH + + L ++ L N LI++YAK G + AR+VF+ M + SW ++S
Sbjct: 325 LSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISA 384
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSP 141
Y G+ A+ +F ++ D DS+++ T + + E F M K++P
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 45 SIYLTNNLINLYA--KSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDE 102
+++L +++ Y ++ V +R + +++ S+ ++ YA + A VFDE
Sbjct: 41 TVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVK-LMRAYASLKDVASARKVFDE 99
Query: 103 IPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
IP+R+ + MI Y + +K+F M V P +T VL +C+ + IG
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159
Query: 163 RKIH 166
RKIH
Sbjct: 160 RKIH 163
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ YA+ G L+KA VF+ + RD VSWT MI Y +A+ +F + +
Sbjct: 348 NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLV 407
Query: 141 PSQFTITNVLSSCAALRALDIGR 163
P L++C+ L+ GR
Sbjct: 408 PDSIAFVTTLAACSHAGLLEEGR 430
>AT3G49140.1 | Symbols: | EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is: EMB2758
(embryo defective 2758) (TAIR:AT4G33990.1); Has 45368
Blast hits to 16108 proteins in 635 species: Archae -
60; Bacteria - 10333; Metazoa - 8211; Fungi - 3499;
Plants - 14806; Viruses - 492; Other Eukaryotes - 7967
(source: NCBI BLink). | chr3:18212187-18217848 REVERSE
Length = 1215
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 39/194 (20%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D Y F +L+ S + + + IH K+GL+ ++++ N L+++Y K G++ +AR V
Sbjct: 139 DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD------------------------ 105
DEM + SWN+++ GYA+ + D AL V E+
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN 258
Query: 106 -------------RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+ VSW MI Y + A A++++ M D P +IT+VL +
Sbjct: 259 VMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPA 318
Query: 153 CAALRALDIGRKIH 166
C AL +G+KIH
Sbjct: 319 CGDTSALSLGKKIH 332
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
LS+ K IH + + L ++ L N LI++YAK G + AR+VF+ M + SW ++S
Sbjct: 325 LSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISA 384
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSP 141
Y G+ A+ +F ++ D DS+++ T + + E F M K++P
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 45 SIYLTNNLINLYA--KSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDE 102
+++L +++ Y ++ V +R + +++ S+ ++ YA + A VFDE
Sbjct: 41 TVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVK-LMRAYASLKDVASARKVFDE 99
Query: 103 IPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
IP+R+ + MI Y + +K+F M V P +T VL +C+ + IG
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159
Query: 163 RKIH 166
RKIH
Sbjct: 160 RKIH 163
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ YA+ G L+KA VF+ + RD VSWT MI Y +A+ +F + +
Sbjct: 348 NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLV 407
Query: 141 PSQFTITNVLSSCAALRALDIGR 163
P L++C+ L+ GR
Sbjct: 408 PDSIAFVTTLAACSHAGLLEEGR 430
>AT3G04750.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:1301391-1303376 REVERSE
Length = 661
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 84/145 (57%), Gaps = 4/145 (2%)
Query: 26 NLSVCKSIHAQMIKLGLNFS--IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
++ + K +H + + G +S + L+N L+++Y K A+ FD M K SWNT+
Sbjct: 247 DIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTM 306
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIK-MFVDM-VKDKVSP 141
+ G+ R G ++ A VFD++P RD VSW +++ GY++ C + ++ +F +M + +KV P
Sbjct: 307 VVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKP 366
Query: 142 SQFTITNVLSSCAALRALDIGRKIH 166
+ T+ +++S A L GR +H
Sbjct: 367 DRVTMVSLISGAANNGELSHGRWVH 391
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
+ WN+++ Y G A VF +P D S+ MIVGY + A+K++ MV
Sbjct: 165 GNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMV 224
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
D + P ++T+ ++L C L + +G+ +H
Sbjct: 225 SDGIEPDEYTVLSLLVCCGHLSDIRLGKGVH 255
>AT1G77010.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28942710-28944797 FORWARD
Length = 695
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 35/185 (18%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYL-TNNLINLYAKSGYIVDARNVFDEM 72
Y LLQ+ ++ + + ++K G SI + N+L+ +Y++SG + ARN+FDEM
Sbjct: 29 YVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEM 88
Query: 73 PVKSTFSWNT-------------------------------ILSGYARQGKLDKALHVFD 101
P ++ FSWNT ++SG+A+ G+L A +F+
Sbjct: 89 PDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFN 148
Query: 102 EIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDI 161
+P++D V+ +++ GY E A+++F ++ S T+T VL +CA L AL
Sbjct: 149 AMPEKDVVTLNSLLHGYILNGYAEEALRLFKEL---NFSADAITLTTVLKACAELEALKC 205
Query: 162 GRKIH 166
G++IH
Sbjct: 206 GKQIH 210
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 78/139 (56%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L K +H K GL I + + L+++Y+K G ++A +F E+ T N+++
Sbjct: 334 LETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKV 393
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y G++D A VF+ I ++ +SW +M G++Q C ++ F M K + + ++
Sbjct: 394 YFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSL 453
Query: 147 TNVLSSCAALRALDIGRKI 165
++V+S+CA++ +L++G ++
Sbjct: 454 SSVISACASISSLELGEQV 472
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 15 AFLLQTNLKS----KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFD 70
A L T LK+ + L K IHAQ++ G+ + ++L+N+YAK G + A + +
Sbjct: 187 AITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLE 246
Query: 71 EMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKM 130
++ S + ++SGYA G+++++ +FD +R + W +MI GY A+ +
Sbjct: 247 QIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVL 306
Query: 131 FVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
F +M +++ T+ V+++C L L+ G+++H
Sbjct: 307 FNEM-RNETREDSRTLAAVINACIGLGFLETGKQMH 341
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 31/140 (22%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + + + A+ +GL+ ++++LI+LY K G++ R VFD M WN+++S
Sbjct: 465 SLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMIS 524
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
GYA G+ G+ AI +F M + P+Q T
Sbjct: 525 GYATNGQ------------------------GF-------EAIDLFKKMSVAGIRPTQIT 553
Query: 146 ITNVLSSCAALRALDIGRKI 165
VL++C ++ GRK+
Sbjct: 554 FMVVLTACNYCGLVEEGRKL 573
>AT4G14820.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:8507794-8510038 REVERSE
Length = 722
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 84/147 (57%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
++ N+ ++I+ +I+ + +L L+ +YA +G + AR F +M V++ F
Sbjct: 224 RTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTA 283
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
++SGY++ G+LD A +FD+ +D V WTTMI Y + + A+++F +M + P
Sbjct: 284 MVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPD 343
Query: 143 QFTITNVLSSCAALRALDIGRKIHLCV 169
++ +V+S+CA L LD + +H C+
Sbjct: 344 VVSMFSVISACANLGILDKAKWVHSCI 370
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
YA G+++ A +VFDE+ RD V+W TMI Y + + A K+F +M V P + +
Sbjct: 156 YASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMIL 215
Query: 147 TNVLSSCAALRALDIGRKIH 166
N++S+C + R I+
Sbjct: 216 CNIVSACGRTGNMRYNRAIY 235
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N +++ YA+ G LD VF+++P R+ VSW++MI + +A+ +F M ++ V
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 141 PSQFTITNVLSSCAALRALDIGRKI 165
P++ T VL C+ ++ G+KI
Sbjct: 443 PNEVTFVGVLYGCSHSGLVEEGKKI 467
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 12 DLYAFL--LQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D ++FL L+ K L +H K+ ++ +++YA G I ARNVF
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVF 169
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMAC------ 123
DEM + +WNT++ Y R G +D+A +F+E+ D +V MI+ AC
Sbjct: 170 DEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKD-SNVMPDEMILCNIVSACGRTGNM 228
Query: 124 -FENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRK 164
+ AI F ++++ V +T +++ A +D+ R+
Sbjct: 229 RYNRAIYEF--LIENDVRMDTHLLTALVTMYAGAGCMDMARE 268
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L K +H+ + GL + + N LIN+YAK G + R+VF++MP ++ SW+++++
Sbjct: 360 LDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419
Query: 87 YARQGKLDKALHVF----DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
+ G+ AL +F E + + V++ ++ G + E K+F M +
Sbjct: 420 LSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDE 474
>AT2G29760.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:12712884-12715100 FORWARD
Length = 738
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L K +NL + + + + + +N ++ L N ++++Y K G I DA+ +FD M K
Sbjct: 238 VLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 297
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM-V 135
+W T+L GYA + A V + +P +D V+W +I Y Q A+ +F ++ +
Sbjct: 298 NVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL 357
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + +Q T+ + LS+CA + AL++GR IH
Sbjct: 358 QKNMKLNQITLVSTLSACAQVGALELGRWIH 388
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 31/152 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ FL++ + +LS+ +S+H +K + +++ N+LI+ Y
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCY----------------- 176
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
FS G LD A VF I ++D VSW +MI G+ Q + A+++F
Sbjct: 177 ----FSC----------GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK 222
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
M + V S T+ VLS+CA +R L+ GR++
Sbjct: 223 MESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 31/134 (23%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + + IH+ + K G+ + ++T+ LI++Y+K G
Sbjct: 381 LELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCG-------------------------- 414
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
L+K+ VF+ + RD W+ MI G C A+ MF M + V P+ T
Sbjct: 415 -----DLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTF 469
Query: 147 TNVLSSCAALRALD 160
TNV +C+ +D
Sbjct: 470 TNVFCACSHTGLVD 483
>AT2G44880.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:18505239-18506906 FORWARD
Length = 555
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 16 FLLQTNLKSKNLSVCK----SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
F T KS +LS+C +H+Q+ + G +Y++ ++++YAK G + ARN FDE
Sbjct: 79 FTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDE 138
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD-RDSVSWTTMIVGYNQMACFENAIKM 130
MP +S SW ++SGY R G+LD A +FD++P +D V + M+ G+ + +A ++
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 131 FVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
F +M V T T ++ ++ +D RK+
Sbjct: 199 FDEMTHKTV----ITWTTMIHGYCNIKDIDAARKL 229
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD 105
+ + N +++ + KSG + AR +FDEM K+ +W T++ GY +D A +FD +P+
Sbjct: 176 VVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPE 235
Query: 106 RDSVSWTTMIVGYNQMACFENAIKMFVDM-VKDKVSPSQFTITNVLSSCAALRALDIGRK 164
R+ VSW TMI GY Q + I++F +M + P TI +VL + + AL +G
Sbjct: 236 RNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEW 295
Query: 165 IHLCV 169
H V
Sbjct: 296 CHCFV 300
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
LS+ + H + + L+ + + ++++Y+K G I A+ +FDEMP K SWN ++ G
Sbjct: 290 LSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHG 349
Query: 87 YARQGKLDKALHVF-----DEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
YA G AL +F +E P D ++ +I N E K F
Sbjct: 350 YALNGNARAALDLFVTMMIEEKP--DEITMLAVITACNHGGLVEEGRKWF 397
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
IL Y++ G+++KA +FDE+P++ SW MI GY A+ +FV M+ ++ P
Sbjct: 314 AILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KP 372
Query: 142 SQFTITNVLSSCAALRALDIGRK 164
+ T+ V+++C ++ GRK
Sbjct: 373 DEITMLAVITACNHGGLVEEGRK 395
>AT5G48910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:19832969-19834909 REVERSE
Length = 646
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF---- 69
+ +L+ K+ + K IH +K G ++ +NL+ +Y G++ DAR +F
Sbjct: 131 FPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNI 190
Query: 70 --DEMPVKSTFS--------WNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
+M V + WN ++ GY R G A +FD++ R VSW TMI GY+
Sbjct: 191 IEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYS 250
Query: 120 QMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHL 167
F++A+++F +M K + P+ T+ +VL + + L +L++G +HL
Sbjct: 251 LNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y++ G ++KA+HVF+ +P + ++W+ MI G+ +AI F M + V PS
Sbjct: 319 YSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAY 378
Query: 147 TNVLSSCAALRALDIGRK 164
N+L++C+ ++ GR+
Sbjct: 379 INLLTACSHGGLVEEGRR 396
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFEN--AIKMFVDMVKDK-VSPSQFTITNV 149
LD A +F+++P R+ SW T+I G+++ + AI +F +M+ D+ V P++FT +V
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 150 LSSCAALRALDIGRKIH 166
L +CA + G++IH
Sbjct: 135 LKACAKTGKIQEGKQIH 151
>AT3G49740.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:18447788-18450001 FORWARD
Length = 737
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H I+ GL +++N L++LY + G + + FDE+ +SW T+LS + G
Sbjct: 79 VHCYAIRSGLLCHSHVSNTLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKLGD 138
Query: 93 LDKALHVFDEIPDRDSVS-WTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
++ A VFD++P+RD V+ W MI G + E ++++F +M K V +F +LS
Sbjct: 139 IEYAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILS 198
Query: 152 SCAALRALDIGRKIH 166
C +LD G+++H
Sbjct: 199 MC-DYGSLDFGKQVH 212
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL + + +L + HA +++ G + N LIN+Y++ G I ++ VF++M K
Sbjct: 495 LLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEKD 554
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDR-----DSVSWTTMIVGYNQMACFENAIKMF 131
SWN+++S Y+R G+ + A++ + + D D+ +++ ++ + E +++F
Sbjct: 555 VVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHAGLVEEGLEIF 614
Query: 132 VDMVK 136
MV+
Sbjct: 615 NSMVE 619
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 34/154 (22%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ LL T+L +L V + + A +IK GL+ I ++N LI+ Y+K+G I A +F+
Sbjct: 392 FGSLLATSL---DLDVLEMVQACIIKFGLSSKIEISNALISAYSKNGQIEKADLLFERSL 448
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMAC-FENAIKMFV 132
K+ SWN I+SG+ G P G + +C E+ +++
Sbjct: 449 RKNLISWNAIISGFYHNG-----------FP----------FEGLERFSCLLESEVRIL- 486
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
P +T++ +LS C + +L +G + H
Sbjct: 487 --------PDAYTLSTLLSICVSTSSLMLGSQTH 512
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
K T N +++ Y++ G + +L VF+++ ++D VSW ++I Y++ ENA+ + M
Sbjct: 522 KETLIGNALINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRHGEGENAVNTYKTM 581
Query: 135 VKD-KVSPSQFTITNVLSSCAALRALDIGRKI 165
+ KV P T + VLS+C+ ++ G +I
Sbjct: 582 QDEGKVIPDAATFSAVLSACSHAGLVEEGLEI 613
>AT3G09040.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:2761195-2764281 REVERSE
Length = 1028
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ +L T + N+ + IH MIK+GL + Y L+++YAK I DAR VF+ +
Sbjct: 163 FSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIV 222
Query: 74 VKSTFSWNTILSGYA-----------------------------------RQGKLDKALH 98
+T W + SGY R GKL A
Sbjct: 223 DPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARL 282
Query: 99 VFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRA 158
+F E+ D V+W MI G+ + C AI+ F +M K V ++ T+ +VLS+ +
Sbjct: 283 LFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVAN 342
Query: 159 LDIGRKIH 166
LD+G +H
Sbjct: 343 LDLGLVVH 350
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 71/223 (31%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ LL T S +L + H+ +IK L ++++ N L+++YAK G + DAR +F+ M
Sbjct: 431 FTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMC 490
Query: 74 VKSTFSWNTILSGYAR----------------------------------------QGK- 92
+ +WNTI+ Y + QGK
Sbjct: 491 DRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQ 550
Query: 93 ---------LDKALH--------------------VFDEIPDRDSVSWTTMIVGYNQMAC 123
LD+ LH VF +P+ VS +I GY+Q
Sbjct: 551 VHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNN- 609
Query: 124 FENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
E A+ +F +M+ V+PS+ T ++ +C +L +G + H
Sbjct: 610 LEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFH 652
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 31/141 (21%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
NL + +HA+ IKLGL +IY+ ++L+++Y+K + A VF+ + K+ WN ++
Sbjct: 342 NLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIR 401
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
GYA G+ K + ++F+DM + FT
Sbjct: 402 GYAHNGESHKVM-------------------------------ELFMDMKSSGYNIDDFT 430
Query: 146 ITNVLSSCAALRALDIGRKIH 166
T++LS+CAA L++G + H
Sbjct: 431 FTSLLSTCAASHDLEMGSQFH 451
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 32/136 (23%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS-TFSWNTILSGYAR 89
++IH+ + L + +N LI++YAK G + + VFDEM +S SWN++++GYA+
Sbjct: 752 RAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAK 811
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
G + AL +FD M + + P + T V
Sbjct: 812 NGYAEDALKIFD-------------------------------SMRQSHIMPDEITFLGV 840
Query: 150 LSSCAALRALDIGRKI 165
L++C+ + GRKI
Sbjct: 841 LTACSHAGKVSDGRKI 856
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 32/140 (22%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + K++H++ + LG++ L N +++LYAK + A FD + K +WN++LS
Sbjct: 76 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSM 134
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y+ GK K L + FV + ++++ P++FT
Sbjct: 135 YSSIGKPGKVL-------------------------------RSFVSLFENQIFPNKFTF 163
Query: 147 TNVLSSCAALRALDIGRKIH 166
+ VLS+CA ++ GR+IH
Sbjct: 164 SIVLSTCARETNVEFGRQIH 183
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNF-SIYLTNNLINLYAKSGYIVDARNVFDEM 72
+A +++ K ++L++ H Q+ K G + YL +L+ +Y S + +A +F E+
Sbjct: 632 FATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSEL 691
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
+ V WT M+ G++Q +E A+K +
Sbjct: 692 SSPKSI------------------------------VLWTGMMSGHSQNGFYEEALKFYK 721
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+M D V P Q T VL C+ L +L GR IH
Sbjct: 722 EMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIH 755
>AT5G15300.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:4968384-4970030 REVERSE
Length = 548
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 66/114 (57%)
Query: 56 YAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMI 115
YAK G I +A +FDEMP K +WN +++G + ++D A +FD ++D V+W MI
Sbjct: 188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMI 247
Query: 116 VGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
GY + A+ +F +M P TI ++LS+CA L L+ G+++H+ +
Sbjct: 248 SGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYI 301
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 61 YIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQ 120
YI++ +V + V + WN ++ YA+ G +D+A+ VF + DRD +W T+IVG
Sbjct: 300 YILETASVSSSIYVGTPI-WNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGL-A 357
Query: 121 MACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRK 164
+ E +I+MF +M + KV P++ T V+ +C+ +D GRK
Sbjct: 358 LHHAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRK 401
>AT3G61170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:22638691-22641237 REVERSE
Length = 783
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 69/118 (58%)
Query: 49 TNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDS 108
+N L+ +KSG + +AR +FD+MP + F+WNT++ Y+ +L A +F P +++
Sbjct: 31 SNLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNT 90
Query: 109 VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+SW +I GY + A +F +M D + P+++T+ +VL C +L L G +IH
Sbjct: 91 ISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIH 148
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 53/86 (61%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ YA++G +D AL VF+ + ++D +SWT ++ G ++ A+K+F +M ++
Sbjct: 368 NALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGIT 427
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P + +VLS+ A L L+ G+++H
Sbjct: 428 PDKIVTASVLSASAELTLLEFGQQVH 453
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 30/139 (21%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IH IK G + + + N L+ +YA+ I +A +F+ M
Sbjct: 145 EQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETME----------------- 187
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
++++V+WT+M+ GY+Q AI+ F D+ ++ +Q+T +VL
Sbjct: 188 -------------GEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVL 234
Query: 151 SSCAALRALDIGRKIHLCV 169
++CA++ A +G ++H C+
Sbjct: 235 TACASVSACRVGVQVHCCI 253
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 26 NLSVCK---SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
++S C+ +H ++K G +IY+ + LI++YAK + AR + + M V SWN+
Sbjct: 239 SVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNS 298
Query: 83 ILSGYARQGKLDKALHVFDEIPDRD 107
++ G RQG + +AL +F + +RD
Sbjct: 299 MIVGCVRQGLIGEALSMFGRMHERD 323
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + +H IK G S+ + N+L+ +Y K G + DA +F+ M ++ +W ++ G
Sbjct: 446 LEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVG 505
Query: 87 YARQGKLDKALHVFDEI 103
YA+ G L+ A FD +
Sbjct: 506 YAKNGLLEDAQRYFDSM 522
>AT1G56690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:21253817-21255931 FORWARD
Length = 704
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%)
Query: 56 YAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMI 115
Y SG I DA F+ MP+K + N ++ G+ G++ KA VFD + DRD+ +W MI
Sbjct: 244 YTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMI 303
Query: 116 VGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
Y + A+ +F M K V PS ++ ++LS CA L +L GR++H
Sbjct: 304 KAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVH 354
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N L++ Y K+ IV+ARNVF+ MP ++ SW ++ GY ++G + +A +F +P+R+ V
Sbjct: 83 NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142
Query: 110 SWTTMIVGYNQMACFENAIKMFVDM--VKDKVSPS 142
SWT M G + A K++ DM VKD V+ +
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLY-DMMPVKDVVAST 176
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 53/86 (61%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD 105
+ + N+I + G + +AR +FDEM ++ +W T+++GY + ++D A +F+ +P+
Sbjct: 172 VVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE 231
Query: 106 RDSVSWTTMIVGYNQMACFENAIKMF 131
+ VSWT+M++GY E+A + F
Sbjct: 232 KTEVSWTSMLLGYTLSGRIEDAEEFF 257
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N++++ Y +G +AR +FDEM ++ SWN ++SGY + + +A +VF+ +P+R+ V
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111
Query: 110 SWTTMIVGYNQMACFENAIKMFVDM 134
SWT M+ GY Q A +F M
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRM 136
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 60 GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
G I AR ++D MPVK + ++ G R+G++D+A +FDE+ +R+ V+WTTMI GY
Sbjct: 155 GRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYR 214
Query: 120 QMACFENAIKMFVDMV-KDKVSPSQFTITNVLSS 152
Q + A K+F M K +VS + + LS
Sbjct: 215 QNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSG 248
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 19/134 (14%)
Query: 27 LSVC---------KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST 77
LSVC + +HA +++ + +Y+ + L+ +Y K G +V A+ VFD K
Sbjct: 338 LSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDI 397
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVD 133
WN+I+SGYA G ++AL +F E+P + V+ ++ + E +++F
Sbjct: 398 IMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFES 457
Query: 134 MVKDKVSPSQFTIT 147
M S+F +T
Sbjct: 458 M------ESKFCVT 465
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 47 YLTNNLINL------YAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVF 100
YLT+ +N ++ G I +AR FD + K+ SWN+I+SGY G +A +F
Sbjct: 12 YLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLF 71
Query: 101 DEIPDRDSVSWTTMIVGY 118
DE+ +R+ VSW ++ GY
Sbjct: 72 DEMSERNVVSWNGLVSGY 89
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLN-FSIYLTNNLINL------YAKSGYIVDA 65
L+ + + N+ S N V I +MI N F + N+++ Y + G + +A
Sbjct: 70 LFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEA 129
Query: 66 RNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFE 125
++F MP ++ SW + G G++DKA ++D +P +D V+ T MI G + +
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
A +F +M + V T T +++ +D+ RK+
Sbjct: 190 EARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKL 225
>AT4G21065.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: CRR28
(CHLORORESPIRATORY REDUCTION28); endonuclease
(TAIR:AT1G59720.1); Has 14270 Blast hits to 5372
proteins in 184 species: Archae - 1; Bacteria - 4;
Metazoa - 153; Fungi - 82; Plants - 13714; Viruses - 0;
Other Eukaryotes - 316 (source: NCBI BLink). |
chr4:11245976-11247763 FORWARD
Length = 595
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 31/154 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y FL++ ++ + ++IH+ +I+ G IY+ N+L++LYA G + A VFD+MP
Sbjct: 124 YPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMP 183
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K +WN++++G+A GK ++AL ++ +
Sbjct: 184 EKDLVAWNSVINGFAENGKPEEAL-------------------------------ALYTE 212
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIHL 167
M + P FTI ++LS+CA + AL +G+++H+
Sbjct: 213 MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL K L++ K +H MIK+GL +++ +N L++LYA+ G + +A+ +FDEM K+
Sbjct: 228 LLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN 287
Query: 77 TFSWNTILSGYARQGKLDKALHVF 100
+ SW +++ G A G +A+ +F
Sbjct: 288 SVSWTSLIVGLAVNGFGKEAIELF 311
>AT4G14050.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:8103645-8105483 REVERSE
Length = 612
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 48 LTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRD 107
+ ++L+++YAK G + A+ VFD + VK+T SW ++SGYA+ G+ ++AL +F +P ++
Sbjct: 142 VKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKN 201
Query: 108 SVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP-SQFTITNVLSSCAALRALDIGRKIH 166
SWT +I G+ Q A +F +M +++V +++++ +CA L A GR++H
Sbjct: 202 LYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH 261
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +H +I LG + ++++N LI++YAK ++ A+++F M + SW +++ G A+
Sbjct: 258 RQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQH 317
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPS 142
G+ +KAL ++D++ + V++ +I + + E ++F M KD + PS
Sbjct: 318 GQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPS 374
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 32/154 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LQ +++ L+ K++HA ++KLG+ L N L+N+Y K G A VFDEMP
Sbjct: 6 YLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMP 65
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI-KMFV 132
RD ++W +++ NQ +
Sbjct: 66 -------------------------------HRDHIAWASVLTALNQANLSGKTLSVFSS 94
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ P F + ++ +CA L ++D GR++H
Sbjct: 95 VGSSSGLRPDDFVFSALVKACANLGSIDHGRQVH 128
>AT5G46460.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:18840305-18842398 FORWARD
Length = 697
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 71/115 (61%)
Query: 52 LINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSW 111
++N +SG + A +F +MPVK T +WN+++ GY + GK+D AL +F ++P ++ +SW
Sbjct: 134 MVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISW 193
Query: 112 TTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
TTMI G +Q A+ +F +M++ + + T V+++CA A +G ++H
Sbjct: 194 TTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVH 248
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD 105
+ L +I Y +S +VDA N+FDEMPV+ SWN+++SG G ++ A+ +FDE+P+
Sbjct: 66 VSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPE 125
Query: 106 RDSVSWTTMIVGYNQMACFENAIKMFVDM-VKD 137
R VSWT M+ G + + A ++F M VKD
Sbjct: 126 RSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKD 158
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 31/134 (23%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H +IKLG + Y++ +LI YA I D+R VFD
Sbjct: 247 VHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFD---------------------- 284
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+++ ++ +V WT ++ GY+ E+A+ +F M+++ + P+Q T + L+S
Sbjct: 285 --------EKVHEQVAV-WTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNS 335
Query: 153 CAALRALDIGRKIH 166
C+AL LD G+++H
Sbjct: 336 CSALGTLDWGKEMH 349
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 43 NFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDE 102
N + + N+L+ S I +AR VF+++P + +++GY R +L AL++FDE
Sbjct: 37 NREVLICNHLL-----SRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDE 91
Query: 103 IPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
+P RD VSW +MI G + A+K+F +M + V
Sbjct: 92 MPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSV 128
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 31/135 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K +H +KLGL ++ N+L+ +Y+ SG + DA +VF ++ KS SWN+I+ G A+
Sbjct: 346 KEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQH 405
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G+ W +I G M++ P + T T +L
Sbjct: 406 GR----------------GKWAFVIFG---------------QMIRLNKEPDEITFTGLL 434
Query: 151 SSCAALRALDIGRKI 165
S+C+ L+ GRK+
Sbjct: 435 SACSHCGFLEKGRKL 449
>AT5G15340.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:4982273-4984144 REVERSE
Length = 623
Score = 85.1 bits (209), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
K ++L + H +K+G+ S+ + N L+++Y K G + + + +F+E+ KS SW
Sbjct: 123 KLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTV 182
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
+L + L++ VF E+P+R++V+WT M+ GY +++ +MV
Sbjct: 183 VLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGL 242
Query: 143 QF-TITNVLSSCAALRALDIGRKIHL 167
F T+ ++LS+CA L +GR +H+
Sbjct: 243 NFVTLCSMLSACAQSGNLVVGRWVHV 268
Score = 57.8 bits (138), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 81 NTILSGYARQGKLDKALHVFDEIP--DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
N + YA G++ A +FDEIP ++D+V WTT++ +++ N++K+FV+M + +
Sbjct: 47 NALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKR 106
Query: 139 VSPSQFTITNVLSSCAALRALDIGRKIH 166
V ++ + CA L L ++ H
Sbjct: 107 VEIDDVSVVCLFGVCAKLEDLGFAQQGH 134
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 41 GLNFSIYLTNNLINLYAKSGYIVDARNVF-----DEMPVKSTFSWNTILSG------YAR 89
GLNF + +++ A+SG +V R V EM + S++ ++ G YA+
Sbjct: 241 GLNFVTLCS--MLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAK 298
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
G +D +++VF + R+ V+W + G I MF M+++ V P T T V
Sbjct: 299 CGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAV 357
Query: 150 LSSCAALRALDIG 162
LS+C+ +D G
Sbjct: 358 LSACSHSGIVDEG 370
>AT3G18840.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:6496198-6498940 FORWARD
Length = 698
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK- 75
+++ + K N+ + +H ++K G + + + ++LI++Y+K G + N+F+ V+
Sbjct: 131 MVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEF 190
Query: 76 -STFSWNTILSGYARQGKLDKALHVFDEIPD-RDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ + N +++ Y R+G +DKAL VF P+ D++SW T+I GY Q E A+KM V
Sbjct: 191 VDSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKMAVS 250
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M ++ + + + VL+ ++L++L IG+++H
Sbjct: 251 MEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVH 283
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Query: 34 HAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKL 93
H + IK G + +N L+NLY+KSG + +ARNVFDEM ++ +SWN +++ Y + +
Sbjct: 11 HIRSIKSGSTLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKFNNV 70
Query: 94 DKALHVFD-EIPDRDSVSWTTMIVGYNQM-ACFENAIKMFVDM---VKDKVSPSQFTITN 148
+A +F+ + +RD +++ T++ G+ + C AI+MF +M KD + FT+T
Sbjct: 71 KEARELFESDNCERDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFTVTT 130
Query: 149 VLSSCAALRALDIGRKIH 166
++ A L + G ++H
Sbjct: 131 MVKLSAKLTNVFYGEQLH 148
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
K+L + K +HA+++K G + ++++ ++++Y K G + A + + +S ++++
Sbjct: 274 KSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASSMI 333
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV-SPSQ 143
GY+ QGK+ +A +FD + +++ V WT M +GY + ++ +++ + ++ +P
Sbjct: 334 VGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTPDS 393
Query: 144 FTITNVLSSCAALRALDIGRKIH 166
+ +VL +C+ ++ G++IH
Sbjct: 394 LVMVSVLGACSLQAYMEPGKEIH 416
>AT1G62260.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:22997826-22999796 REVERSE
Length = 656
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 50 NNLINLYAKSG---YIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR 106
N +I+ Y G ++ +AR +FDEMP + +FSWNT++SGYA+ ++ +AL +F+++P+R
Sbjct: 106 NTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPER 165
Query: 107 DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
++VSW+ MI G+ Q ++A+ +F M SP
Sbjct: 166 NAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP 200
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 69/120 (57%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I+ Y + DA +F EMP + SWN ++SGYA G ++ A H F++ P++ +V
Sbjct: 316 NTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTV 375
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
SW ++I Y + ++ A+ +F+ M + P T+T++LS+ L L +G ++H V
Sbjct: 376 SWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIV 435
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 49 TNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDS 108
TN +N +SGYI +AR++F+++ ++T +WNT++SGY ++ ++++A +FD +P RD
Sbjct: 43 TNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDV 102
Query: 109 VSWTTMIVGY---NQMACFENAIKMFVDM 134
V+W TMI GY + E A K+F +M
Sbjct: 103 VTWNTMISGYVSCGGIRFLEEARKLFDEM 131
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 17/130 (13%)
Query: 22 LKSKNLSVCKSIHAQMIKL--GLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP------ 73
+K++ LS + Q L G +Y N LI Y + G + AR +FD++P
Sbjct: 209 IKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDD 268
Query: 74 ---------VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACF 124
K+ SWN+++ Y + G + A +FD++ DRD++SW TMI GY ++
Sbjct: 269 HGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRM 328
Query: 125 ENAIKMFVDM 134
E+A +F +M
Sbjct: 329 EDAFALFSEM 338
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 45/68 (66%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I+ YAK+ I +A +F++MP ++ SW+ +++G+ + G++D A+ +F ++P +DS
Sbjct: 140 NTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSS 199
Query: 110 SWTTMIVG 117
++ G
Sbjct: 200 PLCALVAG 207
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 66 RNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIP-DRDSVSWTTMIVGYNQMACF 124
+ V ++PV N +++ Y+R G++ ++ +FDE+ R+ ++W MI GY
Sbjct: 437 KTVIPDVPVH-----NALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNA 491
Query: 125 ENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALD 160
A+ +F M + + PS T +VL++CA +D
Sbjct: 492 SEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVD 527
>AT3G49710.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:18437845-18440010 FORWARD
Length = 721
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL ++ ++L KS+HA +K + S YL+N+ +NLY+K G + AR F +
Sbjct: 14 LLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPN 73
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
FS+N I+ YA+ K+ A +FDEIP D+VS+ T+I GY A+ +F M K
Sbjct: 74 VFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRK 133
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
FT++ ++++C +D+ +++H
Sbjct: 134 LGFEVDGFTLSGLIAACC--DRVDLIKQLH 161
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 34/146 (23%)
Query: 20 TNLKSKNLSVCKSIHAQMIKLGL-NFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTF 78
+NL S S CK IH IK + + I + N LI+LY KSG + DAR VFD MP +
Sbjct: 356 SNLSSP--SQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAV 413
Query: 79 SWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
S+N ++ GYA+ G +AL ++ M+
Sbjct: 414 SFNCMIKGYAQHGHGTEALLLYQR-------------------------------MLDSG 442
Query: 139 VSPSQFTITNVLSSCAALRALDIGRK 164
++P++ T VLS+CA +D G++
Sbjct: 443 IAPNKITFVAVLSACAHCGKVDEGQE 468
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 81 NTILSGYARQGKLDKALHVF---DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
N ++ Y++ G L +A+ VF DE+ RD VSW +MIV Y Q A+ ++ +M+
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDEL--RDEVSWNSMIVAYGQHKEGAKALALYKEMIFK 234
Query: 138 KVSPSQFTITNVLSSCAALRALDIGRKIH 166
FT+ +VL++ +L L GR+ H
Sbjct: 235 GFKIDMFTLASVLNALTSLDHLIGGRQFH 263
>AT2G41080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:17132857-17134554 FORWARD
Length = 565
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%)
Query: 53 INLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWT 112
+++Y+K G A V+ M K+ S N +++GY R G L A VFDE+PDR +W
Sbjct: 1 MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60
Query: 113 TMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
MI G Q E + +F +M SP ++T+ +V S A LR++ IG++IH
Sbjct: 61 AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIH 114
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
+++S+ + IH IK GL + + ++L ++Y ++G + D V MPV++ +WNT++
Sbjct: 105 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
G A+ G C E + ++ M P++
Sbjct: 165 MGNAQNG-------------------------------CPETVLYLYKMMKISGCRPNKI 193
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T VLSSC+ L G++IH
Sbjct: 194 TFVTVLSSCSDLAIRGQGQQIH 215
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IHA+ IK+G + + + ++LI++Y+K G + DA F E + W++++S Y
Sbjct: 212 QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFH 271
Query: 91 GKLDKALHVFDEIPDR-----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
G+ D+A+ +F+ + ++ + V++ ++ + + +++F DM+ +K
Sbjct: 272 GQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELF-DMMVEK 323
>AT3G51320.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6
growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: binding
(TAIR:AT3G62890.1); Has 12158 Blast hits to 4373
proteins in 95 species: Archae - 0; Bacteria - 0;
Metazoa - 23; Fungi - 18; Plants - 12009; Viruses - 0;
Other Eukaryotes - 108 (source: NCBI BLink). |
chr3:19049853-19051445 REVERSE
Length = 530
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K H Q IK G + + + N+L+++Y G + A+ +F E+P + SWN+I++G R
Sbjct: 138 KMCHGQAIKHGCDQVLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRN 197
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G + A +FDE+PD++ +SW MI Y +I +F +MV+ ++ T+ +L
Sbjct: 198 GDVLAAHKLFDEMPDKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLL 257
Query: 151 SSCAALRALDIGRKIH 166
++C L GR +H
Sbjct: 258 NACGRSARLKEGRSVH 273
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 16 FLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK 75
LL +S L +S+HA +I+ LN S+ + LI++Y K + AR +FD + ++
Sbjct: 255 LLLNACGRSARLKEGRSVHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIR 314
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPD----RDSVSWTTMIVGYNQMACFENAIKMF 131
+ +WN ++ + G+ + L +F+ + + D V++ ++ G + +
Sbjct: 315 NKVTWNVMILAHCLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGCARAGLVSQGQSYY 374
Query: 132 VDMVKD-KVSPS---QFTITNVLSSCA 154
MV + ++ P+ Q+ + N+ SS
Sbjct: 375 SLMVDEFQIKPNFGHQWCMANLYSSAG 401
>AT3G02010.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:337965-340442 FORWARD
Length = 825
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ + A++IK G + +N ++ + G + AR V+DEMP K+T S NT++SG+ +
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS--PSQFTITN 148
G + A +FD +PDR V+WT ++ Y + + F+ A K+F M + P T T
Sbjct: 93 GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152
Query: 149 VLSSC 153
+L C
Sbjct: 153 LLPGC 157
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N +L Y +LD A +F+EIP++DSV++ T+I GY + + +I +F+ M +
Sbjct: 188 NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQ 247
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
PS FT + VL + L +G+++H
Sbjct: 248 PSDFTFSGVLKAVVGLHDFALGQQLH 273
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 18 LQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST 77
L T ++ NL +S A ++K +F+ L ++ +I+ + N+ ++
Sbjct: 439 LFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLH-----AFIIRSGNL------ENV 487
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
FS + ++ YA+ G + A+ VF+E+PDR++VSW +I + E AI F M++
Sbjct: 488 FSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIES 547
Query: 138 KVSPSQFTITNVLSSCA 154
+ P +I VL++C+
Sbjct: 548 GLQPDSVSILGVLTACS 564
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+A +L+ + +L + K +HA +I+ G +++ + L+++YAK G I DA VF+EMP
Sbjct: 455 FATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP 514
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIK 129
++ SWN ++S +A G + A+ F ++ + DSVS ++ + E +
Sbjct: 515 DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTE 574
Query: 130 MFVDM 134
F M
Sbjct: 575 YFQAM 579
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++ YA+ ++A +F +P R +VSWT +I GY Q +K+F M +
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLR 449
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
Q T VL + A+ +L +G+++H
Sbjct: 450 ADQSTFATVLKASASFASLLLGKQLH 475
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ +L+ + + ++ + +HA + G + + N +++ Y+K +++ R +FDEMP
Sbjct: 253 FSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMI 115
S+N ++S Y++ + + +LH F E+ DR + + TM+
Sbjct: 313 ELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATML 358
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N IL Y++ ++ + +FDE+P+ D VS+ +I Y+Q +E ++ F +M
Sbjct: 289 NQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFD 348
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
F +LS A L +L +GR++H
Sbjct: 349 RRNFPFATMLSIAANLSSLQMGRQLH 374
>AT1G10330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3388747-3390150 FORWARD
Length = 467
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ L++ S ++S ++H Q +K G + ++ + + Y + G + +R +FD++
Sbjct: 89 FPSLIKAACSSFSVSYGVALHGQALKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDIL 148
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ N++L R G++D A F +P D VSWTT+I G+++ A+ +F +
Sbjct: 149 NPCVVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGE 208
Query: 134 MVKDK---VSPSQFTITNVLSSCAAL--RALDIGRKIH 166
M++++ ++P++ T +VLSSCA + +G++IH
Sbjct: 209 MIQNERAVITPNEATFVSVLSSCANFDQGGIRLGKQIH 246
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y + G L+ AL +FD+I D+ +W +I + A++MF M V P+ T+
Sbjct: 268 YGKAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITL 327
Query: 147 TNVLSSCAALRALDIG 162
+L++CA + +D+G
Sbjct: 328 LAILTACARSKLVDLG 343
>AT4G18750.1 | Symbols: DOT4 | DOT4 (DEFECTIVELY ORGANIZED
TRIBUTARIES 4) | chr4:10304850-10307465 FORWARD
Length = 871
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS-----WNTILSG 86
S+ QM+ G+ + ++ A S I R V + VK+ FS NT+L
Sbjct: 282 SVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS-IGVKACFSREDRFCNTLLDM 340
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y++ G LD A VF E+ DR VS+T+MI GY + A+K+F +M ++ +SP +T+
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 147 TNVLSSCAALRALDIGRKIH 166
T VL+ CA R LD G+++H
Sbjct: 401 TAVLNCCARYRLLDEGKRVH 420
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 30/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K +H + + L F I+++N L+++YAK G + +A VF EM VK SWNTI+ GY++
Sbjct: 417 KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 476
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
++AL +F+ + + + + SP + T+ VL
Sbjct: 477 CYANEALSLFNLL------------------------------LEEKRFSPDERTVACVL 506
Query: 151 SSCAALRALDIGRKIH 166
+CA+L A D GR+IH
Sbjct: 507 PACASLSAFDKGREIH 522
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N++++ Y + ++D A VFDE+ +RD +SW ++I GY E + +FV M+ +
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
TI +V + CA R + +GR +H
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVH 319
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IH +++ G ++ N+L+++YAK G ++ A +FD++ K SW +++GY
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 578
Query: 91 GKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPS 142
G +A+ +F+++ + D +S+ +++ + + + F M + K+ P+
Sbjct: 579 GFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 635
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++ YA+ G L A +FD+I +D VSWT MI GY + AI +F M + +
Sbjct: 538 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597
Query: 141 PSQFTITNVLSSCAALRALDIG 162
+ + ++L +C+ +D G
Sbjct: 598 ADEISFVSLLYACSHSGLVDEG 619
>AT3G08820.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:2677122-2679179 REVERSE
Length = 685
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 70 DEMPV-KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI 128
+EM + K++F T+++ YA+ GK++KA VFD + ++D V+W+TMI GY + + I
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGI 298
Query: 129 KMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGR 163
++F+ M+++ + P QF+I LSSCA+L ALD+G
Sbjct: 299 ELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE 333
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
++LS Y+ G+L+ A +FDEIPDR V+WT + GY AI +F MV+ V P
Sbjct: 151 SLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKP 210
Query: 142 SQFTITNVLSSCAALRALDIGRKI 165
+ I VLS+C + LD G I
Sbjct: 211 DSYFIVQVLSACVHVGDLDSGEWI 234
>AT2G45350.1 | Symbols: CRR4 | CRR4 (CHLORORESPIRATORY REDUCTION 4)
| chr2:18694816-18696636 REVERSE
Length = 606
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N++I+ Y K G I DA+ +FD MP + +W T++ GYA+ G + A +FD++P RD V
Sbjct: 249 NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVV 308
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPSQFTITNVLSSCAALRALDIGRKIHL 167
++ +M+ GY Q A+++F DM K+ + P T+ VL + A L L +HL
Sbjct: 309 AYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHL 367
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 50 NNLINLYAKSGYIVD-ARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDS 108
N++I+ YA++ VD A +F +MP K SWN+++ GY + G+++ A +FD +P RD
Sbjct: 217 NSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDV 276
Query: 109 VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDI 161
V+W TMI GY ++ +A +F M V + + + + AL+I
Sbjct: 277 VTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEI 329
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IH + K GL ++L N LI LY K G + +R +FD MP + + S+N+++ GY + G
Sbjct: 136 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGL 195
Query: 93 LDKALHVFDEIP--DRDSVSWTTMIVGYNQMA-CFENAIKMFVDMV-KDKVS 140
+ A +FD +P ++ +SW +MI GY Q + + A K+F DM KD +S
Sbjct: 196 IVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLIS 247
>AT5G37570.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:14924494-14926146 REVERSE
Length = 550
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 67/116 (57%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N L++ KSG +V+A+ +FDEMP + S+ +++ GYA+ G + A +F+E D
Sbjct: 211 NALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVR 270
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
+W+ +I+GY Q A K+F +M V P +F + ++S+C+ + ++ K+
Sbjct: 271 AWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKV 326
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 12 DLYAFLLQTNLKSKN--LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D Y F L + S N + V S+H ++++G + + + + ++ Y K + AR VF
Sbjct: 109 DEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVF 168
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIK 129
EMP ++ SW ++ Y + G+L++A +FD +P+R+ SW ++ G + NA K
Sbjct: 169 GEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKK 228
Query: 130 MFVDMVKDKV 139
+F +M K +
Sbjct: 229 LFDEMPKRDI 238
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 88 ARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTIT 147
A+ G +D+A +F+E+P RD VS+ +M+ G C AI++F MV + + P + T
Sbjct: 351 AKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFT 410
Query: 148 NVLSSCAALRALDIG 162
+L C R ++ G
Sbjct: 411 VILKVCGQSRLVEEG 425
>AT4G08210.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:5183813-5185873 REVERSE
Length = 686
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
++ ++ K L + L N+++++Y K+G +++A + F E+ S+ SWNT++SGY + G
Sbjct: 129 VYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCKAGL 188
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+D+A+ +F +P + VSW +I G+ A++ V M ++ + F + L +
Sbjct: 189 MDEAVTLFHRMPQPNVVSWNCLISGFVDKGS-PRALEFLVRMQREGLVLDGFALPCGLKA 247
Query: 153 CAALRALDIGRKIHLCV 169
C+ L +G+++H CV
Sbjct: 248 CSFGGLLTMGKQLHCCV 264
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINL--------YAKSGY 61
D+ AF L++ +KS S+ + ++IKLGL+ ++ +N++ + + K +
Sbjct: 407 DIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIH 466
Query: 62 IVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQM 121
+ + ++ PV +T ++ Y + G++D + +FD + +RD VSWT +IVG+ Q
Sbjct: 467 GLCIKKGYESEPVTAT----ALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQN 522
Query: 122 ACFENAIKMFVDMVKDKVSPSQFTITNVLSSC 153
E A + F M+ + P++ T +LS+C
Sbjct: 523 GRVEEAFRYFHKMINIGIEPNKVTFLGLLSAC 554
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+SI A +IK G++ ++++ NN+I++Y + DA VFDEM ++ +W T++SGY
Sbjct: 25 ESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVSGYTSD 84
Query: 91 GKLDKALHVFDEIPDRDS 108
GK +KA+ ++ + D +
Sbjct: 85 GKPNKAIELYRRMLDSEE 102
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
+A G + A +F +P++D ++++ +I G + A +F +++K + QF +
Sbjct: 387 HANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIV 446
Query: 147 TNVLSSCAALRALDIGRKIH-LCV 169
+N+L C++L +L G++IH LC+
Sbjct: 447 SNILKVCSSLASLGWGKQIHGLCI 470
>AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3035443-3037560 FORWARD
Length = 705
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%)
Query: 56 YAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMI 115
Y ++G I DA +F+ MPVK + N ++SG ++G++ KA VFD + +R+ SW T+I
Sbjct: 244 YVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVI 303
Query: 116 VGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + A+ +F+ M K V P+ T+ ++LS CA+L +L G+++H
Sbjct: 304 KIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVH 354
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N L++ Y K+G I +AR VFD MP ++ SW ++ GY GK+D A +F ++P+++ V
Sbjct: 83 NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKDK 138
SWT M++G+ Q ++A K++ +M+ DK
Sbjct: 143 SWTVMLIGFLQDGRIDDACKLY-EMIPDK 170
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 54/81 (66%)
Query: 51 NLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVS 110
++I+ K G + +AR +FDEM +S +W T+++GY + ++D A +FD +P++ VS
Sbjct: 177 SMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVS 236
Query: 111 WTTMIVGYNQMACFENAIKMF 131
WT+M++GY Q E+A ++F
Sbjct: 237 WTSMLMGYVQNGRIEDAEELF 257
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 45 SIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIP 104
SI N+++ Y + DAR +FDEMP ++ SWN ++SGY + G++D+A VFD +P
Sbjct: 47 SISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMP 106
Query: 105 DRDSVSWTTMIVGYNQMACFENAIKMFVDMV-KDKVS 140
+R+ VSWT ++ GY + A +F M K+KVS
Sbjct: 107 ERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS 143
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 27 LSVC---------KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST 77
LSVC K +HAQ+++ + +Y+ + L+ +Y K G +V ++ +FD P K
Sbjct: 338 LSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDI 397
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIP 104
WN+I+SGYA G ++AL VF E+P
Sbjct: 398 IMWNSIISGYASHGLGEEALKVFCEMP 424
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 56 YAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMI 115
+ + G I DA +++ +P K + +++ G ++G++D+A +FDE+ +R ++WTTM+
Sbjct: 151 FLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMV 210
Query: 116 VGYNQMACFENAIKMFVDMVKDKVSPS 142
GY Q ++A K+F D++ +K S
Sbjct: 211 TGYGQNNRVDDARKIF-DVMPEKTEVS 236
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 52 LINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSW 111
L+ Y +G + A ++F +MP K+ SW +L G+ + G++D A +++ IPD+D+++
Sbjct: 116 LVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIAR 175
Query: 112 TTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
T+MI G + + A ++F +M + V T T +++ +D RKI
Sbjct: 176 TSMIHGLCKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKI 225
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 49 TNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDS 108
N I ++ G I +AR +FD KS SWN++++GY A +FDE+PDR+
Sbjct: 20 ANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI 79
Query: 109 VSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
+SW ++ GY + + A K+F D++ ++
Sbjct: 80 ISWNGLVSGYMKNGEIDEARKVF-DLMPER 108
>AT2G34400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14516238-14518186 FORWARD
Length = 617
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 70/223 (31%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAK--------------- 58
Y F+ K + + V +S+H+ + K+GL +++ ++LI +YAK
Sbjct: 131 YNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEIT 190
Query: 59 ----------------SGYIVDARNVFDEMPVK--------------------------- 75
+GY DA ++F +M +
Sbjct: 191 ERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRL 250
Query: 76 ------------STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMAC 123
STF + ++S Y + G LD A VF+++ +D V+WT MI Y+Q
Sbjct: 251 LEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGK 310
Query: 124 FENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
A K+F +M K VSP T++ VLS+C ++ AL++G++I
Sbjct: 311 SSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIE 353
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + K I +L L +IY+ L+++Y K G + +A VF+ MPVK+ +WN +++
Sbjct: 346 LELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITA 405
Query: 87 YARQGKLDKALHVFDE--IPDRD 107
YA QG +AL +FD +P D
Sbjct: 406 YAHQGHAKEALLLFDRMSVPPSD 428
>AT4G16835.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:9473021-9474803 FORWARD
Length = 575
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 32/152 (21%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I YA+ G + AR +F M K+ SWN ++SGY G L+KA H F P R V
Sbjct: 73 NTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVV 132
Query: 110 SWTTMIVGYNQM-------ACF-------------------------ENAIKMFVDMVKD 137
+WT MI GY + A F E+ +K+F M+++
Sbjct: 133 AWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEE 192
Query: 138 KVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+ P+ +++ L C+ L AL +GR+IH V
Sbjct: 193 GIRPNSSGLSSALLGCSELSALQLGRQIHQIV 224
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 52 LINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSW 111
LI + +++A +FDE+P TFS+N +LS Y R +KA FD +P +D+ SW
Sbjct: 13 LIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASW 72
Query: 112 TTMIVGYNQMACFENAIKMFVDMV-KDKVS 140
TMI GY + E A ++F M+ K++VS
Sbjct: 73 NTMITGYARRGEMEKARELFYSMMEKNEVS 102
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + + IH + K L + +LI++Y K G + DA +F+ M K +WN ++SG
Sbjct: 214 LQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISG 273
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSP 141
YA+ G DKAL +F E+ D D +++ +++ N + F MV+D KV P
Sbjct: 274 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 333
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
+++S Y + G+L A +F+ + +D V+W MI GY Q + A+ +F +M+ +K+ P
Sbjct: 238 SLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRP 297
Query: 142 SQFTITNVLSSCAALRALDIG 162
T VL +C ++IG
Sbjct: 298 DWITFVAVLLACNHAGLVNIG 318
>AT1G19720.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6819926-6822610 REVERSE
Length = 894
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 40/178 (22%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQG 91
+H+ +K+G + + N+L+++Y+K G + DAR VFD + K ++WN++++GY + G
Sbjct: 373 EVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAG 432
Query: 92 KLDKALHVFDEIPD----------------------------------------RDSVSW 111
KA +F + D R++ +W
Sbjct: 433 YCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATW 492
Query: 112 TTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+I GY Q + A+++F M + P+ TI ++L +CA L + R+IH CV
Sbjct: 493 NLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCV 550
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
L+ +LQ ++ K IH+ +IKLG++ + ++N+++ +YAK G + A F M
Sbjct: 183 LFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRM 242
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDS----VSWTTMIVGYNQMACFENAI 128
+ +WN++L Y + GK ++A+ + E+ V+W +I GYNQ+ + A+
Sbjct: 243 RERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAM 302
Query: 129 KMFVDMVKDKVSPSQFT----ITNVLSSCAALRALDIGRKIHL 167
+ M ++ FT I+ ++ + +ALD+ RK+ L
Sbjct: 303 DLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFL 345
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LL++ + S ++ + + +HA+ L +++ L+++YAK G I DAR VFD M
Sbjct: 84 YLKLLESCIDSGSIHLGRILHAR-FGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMR 142
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
++ F+W+ ++ Y+R+ + + K+F
Sbjct: 143 ERNLFTWSAMIGAYSRENR-------------------------------WREVAKLFRL 171
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
M+KD V P F +L CA ++ G+ IH V
Sbjct: 172 MMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVV 207
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IH +++ L+ + N L + YAKSG I +R +F M K +WN+++ GY
Sbjct: 544 REIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLH 603
Query: 91 GKLDKALHVFDEI------PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
G AL +F+++ P+R ++S ++I+ + M + K+F + D +
Sbjct: 604 GSYGPALALFNQMKTQGITPNRGTLS--SIILAHGLMGNVDEGKKVFYSIAND------Y 655
Query: 145 TITNVLSSCAAL 156
I L C+A+
Sbjct: 656 HIIPALEHCSAM 667
>AT5G09950.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3102877-3105864 REVERSE
Length = 995
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 32/137 (23%)
Query: 31 KSIHAQMIKLGL-NFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYAR 89
+ +H +I GL +F + + N L+N+YAK G I DAR
Sbjct: 333 REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADAR----------------------- 369
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
VF + D+DSVSW +MI G +Q CF A++ + M + + P FT+ +
Sbjct: 370 --------RVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISS 421
Query: 150 LSSCAALRALDIGRKIH 166
LSSCA+L+ +G++IH
Sbjct: 422 LSSCASLKWAKLGQQIH 438
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 33/135 (24%)
Query: 34 HAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKL 93
H+++ K L+ +YL NNLIN Y ++G V AR VFDEMP+++ SW I+SGY+R G+
Sbjct: 24 HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83
Query: 94 DKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSC 153
+AL VF DMVK+ + +Q+ +VL +C
Sbjct: 84 KEAL-VF------------------------------LRDMVKEGIFSNQYAFVSVLRAC 112
Query: 154 AALRALDI--GRKIH 166
+ ++ I GR+IH
Sbjct: 113 QEIGSVGILFGRQIH 127
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+YA +L L +HA ++ L + + + L+++Y+K G + A F+ M
Sbjct: 621 MYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTM 680
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFD------EIPDRDSVSWTTMIVGYNQMACFEN 126
PV++++SWN+++SGYAR G+ ++AL +F+ + P D V++ ++ + E
Sbjct: 681 PVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPP-DHVTFVGVLSACSHAGLLEE 739
Query: 127 AIKMFVDM 134
K F M
Sbjct: 740 GFKHFESM 747
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPSQFT 145
Y++ G+LD AL F+ +P R+S SW +MI GY + E A+K+F M D + P T
Sbjct: 664 YSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVT 723
Query: 146 ITNVLSSCAALRALDIGRK 164
VLS+C+ L+ G K
Sbjct: 724 FVGVLSACSHAGLLEEGFK 742
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYAR 89
+ IH + +KLG++ ++ ++N L+ LYA++GY+ + R +F MP SWN+I+ AR
Sbjct: 435 QQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALAR 493
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 67 NVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR-DSVSWTTMIVGYNQMACFE 125
N+ DE + N +++ Y + G++D +F + +R D+V+W +MI GY
Sbjct: 547 NIADEATTE-----NALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLA 601
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLC 168
A+ + M++ F VLS+ A++ L+ G ++H C
Sbjct: 602 KALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHAC 644
>AT5G13270.1 | Symbols: RARE1 | pentatricopeptide (PPR)
repeat-containing protein | chr5:4246954-4249212 REVERSE
Length = 752
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 31/157 (19%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+Y LL++ + + L + IHA +I+ GL + + ++N+Y K G++V A+ VF
Sbjct: 186 MYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVF--- 242
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
D++ + V+ T ++VGY Q +A+K+FV
Sbjct: 243 ----------------------------DQMAVKKPVACTGLMVGYTQAGRARDALKLFV 274
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
D+V + V F + VL +CA+L L++G++IH CV
Sbjct: 275 DLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACV 311
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 32/155 (20%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+++ +L+ + L++ K IHA + KLGL + + L++ Y K
Sbjct: 287 VFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKC------------- 333
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
S+F + A F EI + + VSW+ +I GY QM+ FE A+K F
Sbjct: 334 ---SSF---------------ESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFK 375
Query: 133 DMVKDKVSP-SQFTITNVLSSCAALRALDIGRKIH 166
+ S + FT T++ +C+ L +IG ++H
Sbjct: 376 SLRSKNASILNSFTYTSIFQACSVLADCNIGGQVH 410
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 36 QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV----KSTFSWNTILSGYARQG 91
+M K G++ S Y L + + R + D M + S N +L Y
Sbjct: 73 EMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQMYCECR 132
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
L+ A +FDE+ + ++VS TTMI Y + + A+ +F M+ P T +L
Sbjct: 133 SLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLK 192
Query: 152 SCAALRALDIGRKIH 166
S RALD GR+IH
Sbjct: 193 SLVNPRALDFGRQIH 207
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+HA IK L S Y + LI +Y+K G + DA VF+ M +W +SG+A G
Sbjct: 409 VHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGN 468
Query: 93 LDKALHVFDEI 103
+AL +F+++
Sbjct: 469 ASEALRLFEKM 479
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%)
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ S + + +++ Y++ G LD A VF+ + + D V+WT I G+ A+++F
Sbjct: 419 IGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEK 478
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGR 163
MV + P+ T VL++C+ ++ G+
Sbjct: 479 MVSCGMKPNSVTFIAVLTACSHAGLVEQGK 508
>AT5G47460.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:19252463-19254193 REVERSE
Length = 576
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 27 LSVCKSIHAQMIKLGLN-FSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
L C IH++++KLGL ++ + N LI++Y K G++ DA VF M K T SWN I++
Sbjct: 174 LGAC--IHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVA 231
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
+R GKL+ L F ++P+ D+V++ +I + + F NA ++ DM S
Sbjct: 232 SCSRNGKLELGLWFFHQMPNPDTVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTI 291
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+T ++S + A + K+H
Sbjct: 292 LTGYVNSEKSGEATEFFTKMH 312
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 31/150 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL+ + +S+C+ +H + K G + L+N+L+ Y S + DA V
Sbjct: 61 LLRVSGNYGYVSLCRQLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKV-------- 112
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
FDE+PD D +SW +++ GY Q F+ I +F+++ +
Sbjct: 113 -----------------------FDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHR 149
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
V P++F+ T L++CA L +G IH
Sbjct: 150 SDVFPNEFSFTAALAACARLHLSPLGACIH 179
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IHA KLGL+ + + + LI++Y+K G + A +F MP K+ WN ++SGYAR G
Sbjct: 342 IHACAHKLGLDSRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGD 401
Query: 93 LDKALHVFDEI-------PDR 106
+A+ +F+++ PDR
Sbjct: 402 SIEAIKLFNQLKQERFLKPDR 422
>AT1G50270.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:18622044-18623834 FORWARD
Length = 596
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 59/89 (66%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
F ++++ Y + D A VFDE+P R+ V+WT +I GY Q CF+ + +F +M+K
Sbjct: 241 FIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKS 300
Query: 138 KVSPSQFTITNVLSSCAALRALDIGRKIH 166
V+P++ T+++VLS+CA + AL GR++H
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVH 329
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
F N+++SGY+ G D A +FD D+D V+WT MI G+ + A+ FV+M K
Sbjct: 139 FVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKT 198
Query: 138 KVSPSQFTITNVLSSCAALRALDIGRKIH 166
V+ ++ T+ +VL + + + GR +H
Sbjct: 199 GVAANEMTVVSVLKAAGKVEDVRFGRSVH 227
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
+T + T++ Y + G L++A+ VF+ + +++ +WT MI G+ +A +F M+
Sbjct: 340 NTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTML 399
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIHL 167
VSP++ T VLS+CA ++ GR++ L
Sbjct: 400 SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFL 431
>AT1G09220.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:2977952-2978968 REVERSE
Length = 338
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 55 LYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTM 114
+Y G ++DA VFDEMP ++ +WN +++G G +KAL +++P+R VSWTT+
Sbjct: 1 MYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTI 60
Query: 115 IVGYNQMACFENAIKMFVDMVK-DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
I GY ++ + AI +F MV D + P++ TI +L + L L + +H
Sbjct: 61 IDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVH 113
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPD--RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
N+++ YA+ G + A F EIP+ ++ VSWTTMI + + A+ MF DM +
Sbjct: 130 NSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG 189
Query: 139 VSPSQFTITNVLSSCA 154
+ P++ T+ +VL++C+
Sbjct: 190 LKPNRVTMISVLNACS 205
>AT1G14470.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:4954080-4955702 FORWARD
Length = 540
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 28 SVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTF-SWNTILSG 86
S+ K I + ++L + ++ L++++AK I AR +F+E+ + +WN ++SG
Sbjct: 285 SLVKLIDEKRVRL----NCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMISG 340
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK-DKVSPSQFT 145
Y R G + A +FD +P R+ VSW ++I GY AI+ F DM+ P + T
Sbjct: 341 YTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVT 400
Query: 146 ITNVLSSCAALRALDIG 162
+ +VLS+C + L++G
Sbjct: 401 MISVLSACGHMADLELG 417
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I+ Y K G +A +FD MP SW +++G+A+ L+ A FD +P++ V
Sbjct: 171 NVMISGYWKWGNKEEACKLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVV 230
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCA 154
SW M+ GY Q E+A+++F DM++ V P++ T V+S+C+
Sbjct: 231 SWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACS 275
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%)
Query: 34 HAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKL 93
A + KLG Y+ N ++++Y K + AR VFD++ + WN ++SGY + G
Sbjct: 124 QALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNK 183
Query: 94 DKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
++A +FD +P+ D VSWT MI G+ ++ ENA K F M + V
Sbjct: 184 EEACKLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSV 229
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 79 SWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
+ +++ YAR G L +A VFDE+ +RD VS+ T+ + + + M +
Sbjct: 435 GYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDEG 494
Query: 139 VSPSQFTITNVLSSCAALRALDIGRKI 165
+ P + T T+VL++C L G++I
Sbjct: 495 IEPDRVTYTSVLTACNRAGLLKEGQRI 521
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 39 KLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALH 98
++ LN S Y +LI +YA+ G + +A+ VFDEM + S+NT+ + +A G + L+
Sbjct: 428 QIKLNDSGY--RSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLN 485
Query: 99 VFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMF 131
+ ++ D D V++T+++ N+ + ++F
Sbjct: 486 LLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIF 522
>AT1G11290.1 | Symbols: CRR22 | CRR22 (CHLORORESPIRATORY
REDUCTION22); endonuclease | chr1:3791454-3793883
REVERSE
Length = 809
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ +LL+ L V K IH ++K G + ++ L N+YAK + +AR VFD MP
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ SWNTI++GY++ G AL +M
Sbjct: 198 ERDLVSWNTIVAGYSQNGMARMAL-------------------------------EMVKS 226
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M ++ + PS TI +VL + +ALR + +G++IH
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIH 259
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
+SV K IH ++ G + + ++ L+++YAK G + AR +FD M ++ SWN+++
Sbjct: 252 ISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDA 311
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y V +E P + A+ +F M+ + V P+ ++
Sbjct: 312 Y-----------VQNENP--------------------KEAMLIFQKMLDEGVKPTDVSV 340
Query: 147 TNVLSSCAALRALDIGRKIH 166
L +CA L L+ GR IH
Sbjct: 341 MGALHACADLGDLERGRFIH 360
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH +++ L+ ++++T L+++YAK G I+ AR +FD M + +WN ++ GY
Sbjct: 458 KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517
Query: 91 GKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
G AL +F+E+ + V++ ++I + E +K F M+K+ S
Sbjct: 518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFY-MMKENYS 570
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%)
Query: 68 VFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENA 127
VF + F ++S + R G +D+A VF+ I + +V + TM+ G+ +++ + A
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 128 IKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
++ FV M D V P + T +L C L +G++IH
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIH 158
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + IH ++LGL+ ++ + N+LI++Y K + A ++F ++ ++ SWN ++
Sbjct: 352 DLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMIL 411
Query: 86 GYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
G+A+ G+ AL+ F ++ R D+ ++ ++I +++ +A + +++ +
Sbjct: 412 GFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDK 471
Query: 142 SQFTITNVLSSCAALRALDIGRKI 165
+ F T ++ A A+ I R I
Sbjct: 472 NVFVTTALVDMYAKCGAIMIARLI 495
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++S Y + ++D A +F ++ R VSW MI+G+ Q +A+ F M V
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVK 435
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P FT +V+++ A L + IH
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIH 461
>AT3G26540.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:9744542-9746644 REVERSE
Length = 700
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 76/144 (52%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
+S L V K IHA +KL + ++ ++ ++Y K + AR VFD+ K SW +
Sbjct: 275 RSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTS 334
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
+SGYA G +A +FD +P+R+ VSW M+ GY ++ A+ M ++ +
Sbjct: 335 AMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENID 394
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
T+ +L+ C+ + + +G++ H
Sbjct: 395 NVTLVWILNVCSGISDVQMGKQAH 418
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 45 SIYLTNNLINLYAKSGYIVDARNVFDEM----PVKSTFSWNTILSGYARQGKLDKALHVF 100
S +L L + +V AR V + P+ F N + Y + G +D A +F
Sbjct: 60 SYWLYERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELF 119
Query: 101 DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALD 160
+E+P+RD SW +I Q + +MF M +D V ++ + VL SC + L
Sbjct: 120 EEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLR 179
Query: 161 IGRKIHLCV 169
+ R++H V
Sbjct: 180 LLRQLHCAV 188
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 31/141 (21%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + + +H ++K G + ++ L +++++Y K + DAR VF
Sbjct: 177 DLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVF---------------- 220
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
DEI + VSW ++ Y +M + A+ MF M++ V P T
Sbjct: 221 ---------------DEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHT 265
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+++V+ +C+ AL++G+ IH
Sbjct: 266 VSSVMLACSRSLALEVGKVIH 286
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPD-RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
N +L Y + G L A F ++ + RD VSW ++ G ++ E A+ F M + +
Sbjct: 434 NALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM-QVEA 492
Query: 140 SPSQFTITNVLSSCAALRALDIGRKIH 166
PS++T+ +L+ CA + AL++G+ IH
Sbjct: 493 KPSKYTLATLLAGCANIPALNLGKAIH 519
>AT3G12770.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4056900-4059193 REVERSE
Length = 719
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 34/154 (22%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
YA L+ + L K IHA+++ LGL FS +L LI+ + G I AR VFD++
Sbjct: 23 FYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
P F WN I+ GY+R F++A+ M+
Sbjct: 80 PRPQIFPWNAIIRGYSRNNH-------------------------------FQDALLMYS 108
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+M +VSP FT ++L +C+ L L +GR +H
Sbjct: 109 NMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ LL+ +L + + +HAQ+ +LG + +++ N LI LYAK + AR VF+ +P
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+P+R VSWT ++ Y Q A+++F
Sbjct: 182 -----------------------------LPERTIVSWTAIVSAYAQNGEPMEALEIFSQ 212
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
M K V P + +VL++ L+ L GR IH V
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASV 248
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
++L +SIHA ++K+GL L +L +YAK G + A+ +FD+M + WN ++
Sbjct: 236 QDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMI 295
Query: 85 SGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMF 131
SGYA+ G +A+ +F E+ ++ D++S T+ I Q+ E A M+
Sbjct: 296 SGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
>AT5G40405.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT5G66520.1); Has
12548 Blast hits to 5076 proteins in 168 species: Archae
- 0; Bacteria - 2; Metazoa - 87; Fungi - 66; Plants -
12146; Viruses - 0; Other Eukaryotes - 247 (source: NCBI
BLink). | chr5:16169315-16171153 FORWARD
Length = 612
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 16 FLLQ--TNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
FL+Q T L+ + + +H I+ G + ++ LI+LYA+ G + VF+ +P
Sbjct: 113 FLVQACTGLRMRETGL--QVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIP 170
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+++ AR G + A +F+ +P+RD ++W MI GY Q+ A+ +F
Sbjct: 171 CPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHL 230
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M + V + + +VLS+C L ALD GR H
Sbjct: 231 MQLEGVKVNGVAMISVLSACTQLGALDQGRWAH 263
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 48/83 (57%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
T++ YA+ G ++KA+ VF + +++ +W++ + G E +++F M +D V+P
Sbjct: 280 TLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTP 339
Query: 142 SQFTITNVLSSCAALRALDIGRK 164
+ T +VL C+ + +D G++
Sbjct: 340 NAVTFVSVLRGCSVVGFVDEGQR 362
>AT5G42450.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:16977660-16978850 FORWARD
Length = 396
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 40 LGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHV 99
+GL ++++ + ++N Y K + DAR FD+ + S ++SGY ++ + ++AL +
Sbjct: 1 MGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITNLISGYLKKHEFEEALSL 60
Query: 100 FDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS-PSQFTITNVLSSCAALRA 158
F +P+R V+W +I G++Q E A+ FVDM+++ V P++ T +++ + + +
Sbjct: 61 FRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAISNIAS 120
Query: 159 LDIGRKIHLCV 169
G+ IH C
Sbjct: 121 HGAGKSIHACA 131
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPD--RDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ F WN+++S Y++ G ++ +L F+++ + R+ VSW +MI GY E A+ MF
Sbjct: 140 NVFVWNSLISFYSKCGNMEDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEK 199
Query: 134 MVKD-KVSPSQFTITNVLSSC 153
MVKD + P+ TI VL +C
Sbjct: 200 MVKDTNLRPNNVTILGVLFAC 220
>AT1G59720.1 | Symbols: CRR28 | CRR28 (CHLORORESPIRATORY
REDUCTION28); endonuclease | chr1:21939868-21941784
REVERSE
Length = 638
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 32/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F+L+ S K +H Q++K G +Y+ N LI+LY G + AR VFDEMP
Sbjct: 154 FPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 213
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+S SWN+++ R G+ D AL +F E+
Sbjct: 214 ERSLVSWNSMIDALVRFGEYDSALQLFREM------------------------------ 243
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ P +T+ +VLS+CA L +L +G H
Sbjct: 244 --QRSFEPDGYTMQSVLSACAGLGSLSLGTWAH 274
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD 105
+ + N+LI +Y K G + A VF M + SWN ++ G+A G+ ++A++ FD + D
Sbjct: 289 VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVD 348
Query: 106 R------DSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
+ +SV++ +++ N + F MV+D
Sbjct: 349 KRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 386
>AT1G20230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:7009570-7011852 FORWARD
Length = 760
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
Query: 29 VCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYA 88
V K IH GL+ ++ ++ ++Y + G + DAR VFD M K + + +L YA
Sbjct: 134 VGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193
Query: 89 RQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
R+G L++ + + E+ + + VSW ++ G+N+ + A+ MF + P Q
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQV 253
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T+++VL S L++GR IH
Sbjct: 254 TVSSVLPSVGDSEMLNMGRLIH 275
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 24 SKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
S+ L++ + IH +IK GL + + +I++Y KSG++ ++F++ + N
Sbjct: 265 SEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAY 324
Query: 84 LSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
++G +R G +DKAL +F+ ++ + VSWT++I G Q A+++F +M V
Sbjct: 325 ITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGV 384
Query: 140 SPSQFTITNVLSSCAALRALDIGRKIH 166
P+ TI ++L +C + AL GR H
Sbjct: 385 KPNHVTIPSMLPACGNIAALGHGRSTH 411
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+S H +++ L ++++ + LI++YAK G I ++ VF+ MP K+ WN++++G++
Sbjct: 408 RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMH 467
Query: 91 GKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
GK + + +F+ + D +S+T+++ Q+ + K F M ++
Sbjct: 468 GKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEE 518
>AT2G37310.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15665102-15667075 REVERSE
Length = 657
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+ Q +S +L +H +MI+ + + L N +I YAK G + AR +FDEM K
Sbjct: 240 VFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKD 299
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
+ ++ I+SGY G + +A+ +F E+ +W MI G Q E I F +M++
Sbjct: 300 SVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIR 359
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
P+ T++++L S L G++IH
Sbjct: 360 CGSRPNTVTLSSLLPSLTYSSNLKGGKEIH 389
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL + S NL K IHA I+ G + +IY+T ++I+ YAK G+++ A+ VFD +S
Sbjct: 372 LLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRS 431
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFV 132
+W I++ YA G D A +FD++ D V+ T ++ + + A +F
Sbjct: 432 LIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFD 491
Query: 133 DMV-KDKVSPS 142
M+ K + P
Sbjct: 492 SMLTKYDIEPG 502
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 60 GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
G+++ R FD F N +++ Y + ++ A VFDE+ +RD VSW +MI GY+
Sbjct: 156 GFVI--RGGFD----SDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYS 209
Query: 120 QMACFENAIKMFVDMVK-DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
Q FE+ KM+ M+ P+ T+ +V +C L G ++H
Sbjct: 210 QSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVH 257
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV-- 135
F + ++S Y RQ + +ALHVFDEI R++ S+ +++ Y + +A +F+ +
Sbjct: 58 FLASKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGS 117
Query: 136 ----KDKVSPSQFTITNV---LSSCAALRALDIGRKIH 166
D P +I+ V LS C + R++H
Sbjct: 118 SCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVH 155
>AT4G14850.1 | Symbols: LOI1 | LOI1 (lovastatin insensitive 1) |
chr4:8513947-8516275 FORWARD
Length = 684
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 69/115 (60%), Gaps = 6/115 (5%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
L + +SIHA +K + +I++ + L+++Y K G I D+ FDEMP K+ + N+++
Sbjct: 325 GLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIG 384
Query: 86 GYARQGKLDKALHVFDEI------PDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
GYA QG++D AL +F+E+ P + +++ +++ ++ EN +K+F M
Sbjct: 385 GYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSM 439
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 31/141 (21%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L++ +H +++ G + + + N LI+ Y K I + +F EM K
Sbjct: 224 HLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK---------- 273
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
++VSW +++ Y Q E A +++ KD V S F
Sbjct: 274 ---------------------NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFM 312
Query: 146 ITNVLSSCAALRALDIGRKIH 166
I++VLS+CA + L++GR IH
Sbjct: 313 ISSVLSACAGMAGLELGRSIH 333
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 12 DLYAFLLQTNLKSKNLSVCKSIHAQMIK-LGLNFSIYLTNNLINLYAKSGYIVDARNVFD 70
D LL+ + + ++ + + +HA+++K L +L N LIN+Y+K + AR V
Sbjct: 7 DALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLR 66
Query: 71 EMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKM 130
P R+ VSWT++I G Q F A+
Sbjct: 67 LTPA-------------------------------RNVVSWTSLISGLAQNGHFSTALVE 95
Query: 131 FVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
F +M ++ V P+ FT + A+LR G++IH
Sbjct: 96 FFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIH 131
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IHA +K G +++ + ++Y K+ DAR +FDE+P ++ +WN +S
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTD 187
Query: 91 GKLDKALHVFDE 102
G+ +A+ F E
Sbjct: 188 GRPREAIEAFIE 199
>AT3G11460.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:3608250-3610121 FORWARD
Length = 623
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 31/135 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+S+H Q +K GL+ + + N+ I +Y K G + R +FDEMPVK +WN ++SGY++
Sbjct: 176 RSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQN 235
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G + Y+ + +E M V P FT+ +VL
Sbjct: 236 G------------------------LAYDVLELYEQ-------MKSSGVCPDPFTLVSVL 264
Query: 151 SSCAALRALDIGRKI 165
SSCA L A IG ++
Sbjct: 265 SSCAHLGAKKIGHEV 279
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%)
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
V + F N +S YAR G L KA VFD +P + VSWT MI Y E + +F D
Sbjct: 289 VPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDD 348
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
M+K + P VLS+C+ D G ++
Sbjct: 349 MIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 380
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 41 GLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVF 100
G +++++N I++YA+ G + AR VFD MPVKS SW ++ Y G + L +F
Sbjct: 287 GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLF 346
Query: 101 DEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPS 142
D++ R D + ++ + + +++F M ++ K+ P
Sbjct: 347 DDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPG 393
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS--WNTILSGYA 88
+ +H + K G ++ LI++Y K G + DAR VF+E P S S +N ++SGY
Sbjct: 73 QQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYT 132
Query: 89 RQGKLDKALHVFDEIPDRD-SVSWTTMI 115
K+ A ++F + + SV TM+
Sbjct: 133 ANSKVTDAAYMFRRMKETGVSVDSVTML 160
>AT1G28690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:10080042-10081604 REVERSE
Length = 520
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 28 SVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGY 87
S+C+ +HA++IK + L L++ Y KSG + AR VF+ M ++ +++SGY
Sbjct: 157 SLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGY 216
Query: 88 ARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMA-CFENAIKMFVDMVKDKVSPSQFTI 146
QG ++ A +F+ +D V + M+ G+++ + ++ M++ M + P+ T
Sbjct: 217 MNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTF 276
Query: 147 TNVLSSCAALRALDIGRKIH 166
+V+ +C+ L + ++G+++H
Sbjct: 277 ASVIGACSVLTSHEVGQQVH 296
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 29 VCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYA 88
V + +HAQ++K G+ I + ++L+++YAK G I DAR VFD+M K+ FSW +++ GY
Sbjct: 291 VGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYG 350
Query: 89 RQGKLDKALHVFDEIPD 105
+ G ++AL +F + +
Sbjct: 351 KNGNPEEALELFTRMKE 367
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 15 AFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
A LQ ++ S K IHA +IK G + ++ L+ L+ K G + AR VFDE+P
Sbjct: 38 AGALQEHINSPAPKAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPK 97
Query: 75 KSTFSWNTILSGYARQG 91
+ ++N ++SGY + G
Sbjct: 98 PTLSAYNYMISGYLKHG 114
>AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:11695611-11697896 FORWARD
Length = 761
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 40 LGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM-PVKSTFSWNTILSGYARQGKLDKALH 98
L +F + N +IN Y K+G + A +F+ + + SW +++ GY G + +A
Sbjct: 362 LNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFG 421
Query: 99 VFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRA 158
+F ++ D+D V+WT MI G Q F A + DMV+ + P T + +LSS A
Sbjct: 422 LFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSN 481
Query: 159 LDIGRKIHLCV 169
LD G+ IH CV
Sbjct: 482 LDQGKHIH-CV 491
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L +K + ++ ++ +M K +++++ LT G DA +FDEMP ++
Sbjct: 114 MLTGYVKCRRMNEAWTLFREMPKNVVSWTVMLT-----ALCDDGRSEDAVELFDEMPERN 168
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
SWNT+++G R G ++KA VFD +P RD VSW MI GY + E A +F DM +
Sbjct: 169 VVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSE 228
Query: 137 DKV 139
V
Sbjct: 229 KNV 231
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV 109
N +I Y ++ + +A+ +F +M K+ +W +++ GY R G + +A +F E+P+R+ V
Sbjct: 204 NAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIV 263
Query: 110 SWTTMIVGYNQMACFENAIKMFVDMVK--DKVSPSQFTITNVLSSCAALRA--LDIGRKI 165
SWT MI G+ + A+ +F++M K D VSP+ T+ ++ +C L +G ++
Sbjct: 264 SWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQL 323
Query: 166 H 166
H
Sbjct: 324 H 324
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 25 KNLSVCKSIHAQMI------KLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTF 78
+ LS +HA+ + + +N +Y T+ L++ YAK+GY+ +AR +F+ MP ++
Sbjct: 51 RRLSEGGLVHARHLLDKIPQRGSINRVVYWTS-LLSKYAKTGYLDEARVLFEVMPERNIV 109
Query: 79 SWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
+ N +L+GY + ++++A +F E+P ++ VSWT M+ E+A+++F +M +
Sbjct: 110 TCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMPERN 168
Query: 139 VSPSQFTITNVL 150
V +T ++
Sbjct: 169 VVSWNTLVTGLI 180
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFS--IYLTNNLINLYAKSGYIVDARNVFDE 71
Y+ LL + + NL K IH + K + + L N+L+++YAK G I DA +F +
Sbjct: 469 YSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAK 528
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD 105
M K T SWN+++ G + G DKAL++F E+ D
Sbjct: 529 MVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLD 562
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++S YA+ G ++ A +F ++ +D+VSW +MI+G + + A+ +F +M+
Sbjct: 507 NSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKK 566
Query: 141 PSQFTITNVLSSCA 154
P+ T VLS+C+
Sbjct: 567 PNSVTFLGVLSACS 580
>AT5G08490.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:2745208-2747757 REVERSE
Length = 849
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGL---NFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
LL+ + + + K +H +K GL L N L++ YAK G + A +F +
Sbjct: 438 LLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLS 497
Query: 74 VKSTF-SWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
+ T S+N++LSGY G D A +F E+ D +W+ M+ Y + C AI +F
Sbjct: 498 ERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFR 557
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
++ + P+ TI N+L CA L +L + R+ H
Sbjct: 558 EIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCH 591
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 33/139 (23%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
KS+H+ +IK GL + N L+++YAK G+I
Sbjct: 142 KSMHSYIIKAGLEKDTLVGNALVSMYAKFGFI---------------------------- 173
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
A FD I D+D VSW +I G+++ +A + F M+K+ P+ TI NVL
Sbjct: 174 --FPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVL 231
Query: 151 SSCAALR---ALDIGRKIH 166
CA++ A GR+IH
Sbjct: 232 PVCASMDKNIACRSGRQIH 250
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 54 NLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTT 113
N+ +SG + + V F N+++S Y R G++++A +F + +D VSW
Sbjct: 240 NIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNV 299
Query: 114 MIVGYNQMACFENAIKMFVDMV-KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+I GY + A ++F ++V K VSP TI ++L CA L L G++IH
Sbjct: 300 VIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIH 353
>AT4G30700.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:14962617-14964995 REVERSE
Length = 792
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD 105
+ ++ +L+ +YA GY + + N V + + + Y++ +++ A +FDE P+
Sbjct: 329 VPVSGHLMLIYAIHGYCLKS-NFLSHASVSTALT-----TVYSKLNEIESARKLFDESPE 382
Query: 106 RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
+ SW MI GY Q E+AI +F +M K + SP+ TIT +LS+CA L AL +G+ +
Sbjct: 383 KSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWV 442
Query: 166 H 166
H
Sbjct: 443 H 443
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
LS+ K +H + SIY++ LI +YAK G I +AR +FD M K+ +WNT++SG
Sbjct: 436 LSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISG 495
Query: 87 YARQGKLDKALHVFDEI 103
Y G+ +AL++F E+
Sbjct: 496 YGLHGQGQEALNIFYEM 512
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 32/154 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
YAF + ++ + IH Q + G + + L +N++ +Y K + DAR VFD MP
Sbjct: 122 YAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMP 181
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K T WNT++SGY + N+M + +I++F D
Sbjct: 182 EKDTILWNTMISGYRK-----------------------------NEM--YVESIQVFRD 210
Query: 134 MVKDKVSP-SQFTITNVLSSCAALRALDIGRKIH 166
++ + + T+ ++L + A L+ L +G +IH
Sbjct: 211 LINESCTRLDTTTLLDILPAVAELQELRLGMQIH 244
>AT4G35130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:16721084-16723498 REVERSE
Length = 804
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y F++++ +L K IHA +IKLG +Y+ N+LI+LY K G DA VF+EMP
Sbjct: 133 YPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMP 192
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ SWN+++SGY G D S ++ +F +
Sbjct: 193 ERDIVSWNSMISGYLALG---------------DGFS----------------SLMLFKE 221
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M+K P +F+ + L +C+ + + +G++IH
Sbjct: 222 MLKCGFKPDRFSTMSALGACSHVYSPKMGKEIH 254
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
++IH ++ G + L LI++Y + G + A +FD M K+ SWN+I++ Y +
Sbjct: 350 RTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQN 409
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
GK AL +F E+ D DS + +++ Y + ++ +VK + + +
Sbjct: 410 GKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIIL 469
Query: 147 TNVLSSCAALRALDIGRK 164
+++ A L+ RK
Sbjct: 470 NSLVHMYAMCGDLEDARK 487
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 31/148 (20%)
Query: 15 AFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
A +L +S +LS + IHA ++K + + N+L+++YA G + DAR F+ + +
Sbjct: 435 ASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILL 494
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
K SWN+I+ Y A+H F I ++ +F +M
Sbjct: 495 KDVVSWNSIIMAY--------AVHGFGRI-----------------------SVWLFSEM 523
Query: 135 VKDKVSPSQFTITNVLSSCAALRALDIG 162
+ +V+P++ T ++L++C+ +D G
Sbjct: 524 IASRVNPNKSTFASLLAACSISGMVDEG 551
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
L G+A ++ AL +FDE+ D+ W MI G+ + A++ + MV V
Sbjct: 71 LRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADT 130
Query: 144 FTITNVLSSCAALRALDIGRKIHLCV 169
FT V+ S A + +L+ G+KIH V
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMV 156
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 36/153 (23%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS----------------GYARQ--- 90
N +I YA++G + DA F +M ++ + I S GYA +
Sbjct: 302 NVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGF 361
Query: 91 -----------------GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
G+L A +FD + +++ +SW ++I Y Q +A+++F +
Sbjct: 362 LPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQE 421
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + P TI ++L + A +L GR+IH
Sbjct: 422 LWDSSLVPDSTTIASILPAYAESLSLSEGREIH 454
>AT4G13650.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:7939611-7942898 REVERSE
Length = 1064
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y +L+T ++ +L + + IH+Q+IK + Y+ + LI++YAK
Sbjct: 493 YPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK--------------- 537
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
GKLD A + +D VSWTTMI GY Q + A+ F
Sbjct: 538 ----------------LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M+ + + +TN +S+CA L+AL G++IH
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 614
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 31/138 (22%)
Query: 29 VCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYA 88
V + IHA+++ GL S + N LI+LY+++G+
Sbjct: 205 VVEQIHARILYQGLRDSTVVCNPLIDLYSRNGF--------------------------- 237
Query: 89 RQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITN 148
+D A VFD + +D SW MI G ++ C AI++F DM + P+ + ++
Sbjct: 238 ----VDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSS 293
Query: 149 VLSSCAALRALDIGRKIH 166
VLS+C + +L+IG ++H
Sbjct: 294 VLSACKKIESLEIGEQLH 311
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 31/140 (22%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
++ N+ K +HA + K G + + N LI++YAK G I DA F E+ K+ SWN
Sbjct: 704 ETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNA 763
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
I++ Y++ G +AL FD+ M+ V P+
Sbjct: 764 IINAYSKHGFGSEALDSFDQ-------------------------------MIHSNVRPN 792
Query: 143 QFTITNVLSSCAALRALDIG 162
T+ VLS+C+ + +D G
Sbjct: 793 HVTLVGVLSACSHIGLVDKG 812
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 33/153 (21%)
Query: 16 FLLQTNLKSK-NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
+LL+ LK+ +L + +H+Q++KLGL+ + L+ L + Y G + A VFDEMP
Sbjct: 89 WLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPE 148
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
++ F+WN ++ E+ R+ ++G +FV M
Sbjct: 149 RTIFTWNKMIK----------------ELASRN-------LIG--------EVFGLFVRM 177
Query: 135 VKDKVSPSQFTITNVLSSC-AALRALDIGRKIH 166
V + V+P++ T + VL +C A D+ +IH
Sbjct: 178 VSENVTPNEGTFSGVLEACRGGSVAFDVVEQIH 210
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 33/155 (21%)
Query: 14 YAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
YAF +L K ++L + + +H ++KLG + Y+ N L++LY G ++ A
Sbjct: 289 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE----- 343
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
H+F + RD+V++ T+I G +Q E A+++F
Sbjct: 344 --------------------------HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M D + P T+ +++ +C+A L G+++H
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLH 412
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
+L+ YA+ ++ AL F E + V W M+V Y + N+ ++F M +++
Sbjct: 428 GALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV 487
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P+Q+T ++L +C L L++G +IH
Sbjct: 488 PNQYTYPSILKTCIRLGDLELGEQIH 513
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 51/89 (57%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N +++ Y+R GK++++ F++ D+++W ++ G+ Q E A+++FV M ++ +
Sbjct: 630 NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID 689
Query: 141 PSQFTITNVLSSCAALRALDIGRKIHLCV 169
+ FT + + + + + G+++H +
Sbjct: 690 NNNFTFGSAVKAASETANMKQGKQVHAVI 718
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IHAQ G + + N L+ LY++ G I ++ F++ +WN ++SG+ +
Sbjct: 611 QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQS 670
Query: 91 GKLDKALHVF 100
G ++AL VF
Sbjct: 671 GNNEEALRVF 680
>AT3G13880.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4572180-4574426 FORWARD
Length = 748
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 26/135 (19%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQG 91
+IH KLG+ F I + L+++YAK+G + +A +F MP K+ ++N ++SG+ +
Sbjct: 273 AIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQ-- 330
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
DEI D S A K+F+DM + + PS T + VL
Sbjct: 331 --------MDEITDEAS----------------SEAFKLFMDMQRRGLEPSPSTFSVVLK 366
Query: 152 SCAALRALDIGRKIH 166
+C+A + L+ GR+IH
Sbjct: 367 ACSAAKTLEYGRQIH 381
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + + +H ++ GL+ ++L N LI++Y+K G + A ++FD + SWN+++S
Sbjct: 163 DLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLIS 222
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
GY R G ++ L++ ++ RD ++ TT +G AC N + F++
Sbjct: 223 GYVRVGAAEEPLNLLAKM-HRDGLNLTTYALGSVLKACCINLNEGFIE 269
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
+ F N ++ Y++ GKLD+A+ +FD +RD VSW ++I GY ++ E + + M
Sbjct: 181 QQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKM 240
Query: 135 VKDKVSPSQFTITNVLSSC 153
+D ++ + + + +VL +C
Sbjct: 241 HRDGLNLTTYALGSVLKAC 259
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L QT KS ++ + K H MIK LN +YL NNL+N+Y K +
Sbjct: 50 YKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCREL----------- 98
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
G+ARQ +FD +P+R+ +S+ ++I GY QM +E A+++F++
Sbjct: 99 ------------GFARQ--------LFDRMPERNIISFNSLISGYTQMGFYEQAMELFLE 138
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + +FT L C LD+G +H
Sbjct: 139 AREANLKLDKFTYAGALGFCGERCDLDLGELLH 171
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
F + ++ YA G + + F +D SWT+MI + Q E+A +F +
Sbjct: 394 FIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSS 453
Query: 138 KVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ P ++T++ ++S+CA AL G +I
Sbjct: 454 HIRPEEYTVSLMMSACADFAALSSGEQIQ 482
>AT5G52630.1 | Symbols: MEF1 | MEF1 (MITOCHONDRIAL RNA EDITING
FACTOR 1) | chr5:21350375-21352141 FORWARD
Length = 588
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 34/143 (23%)
Query: 27 LSVC---KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
LS C +S+H +K G + +++ ++L+++YAK G IV AR +FDEMP ++ +W+ +
Sbjct: 129 LSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGM 188
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
+ GYA+ G+ ++AL +F E A FEN ++ +
Sbjct: 189 MYGYAQMGENEEALWLFKE-------------------ALFEN------------LAVND 217
Query: 144 FTITNVLSSCAALRALDIGRKIH 166
++ ++V+S CA L++GR+IH
Sbjct: 218 YSFSSVISVCANSTLLELGRQIH 240
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 31/150 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL ++ ++++ +H ++K GL+ + NNLIN Y+KS D+R F++ P KS
Sbjct: 21 LLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKS 80
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
+ +W++I+S +A+ +E+P W ++ + M+
Sbjct: 81 STTWSSIISCFAQ-----------NELP------WMSL--------------EFLKKMMA 109
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ P + + SCA L DIGR +H
Sbjct: 110 GNLRPDDHVLPSATKSCAILSRCDIGRSVH 139
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
++S Y++ G + A VF+E+P ++ W M+ Y Q + + I++F M + P+
Sbjct: 258 LVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPN 317
Query: 143 QFTITNVLSSCAALRALDIGR 163
T NVL++C+ +D GR
Sbjct: 318 FITFLNVLNACSHAGLVDEGR 338
>AT2G27610.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:11783927-11786533 REVERSE
Length = 868
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
+S+ +L Y + GK+++A VF I D+D V+W+ M+ GY Q E AIKMF ++
Sbjct: 426 RSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGEL 485
Query: 135 VKDKVSPSQFTITNVLSSCAALRA-LDIGRKIH 166
K + P++FT +++L+ CAA A + G++ H
Sbjct: 486 TKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 518
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K H IK L+ S+ +++ L+ +YAK G I A VF K SWN+++SGYA+
Sbjct: 515 KQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQH 574
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPSQ 143
G+ KAL VF E+ R D V++ + E K F MV+D K++P++
Sbjct: 575 GQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTK 632
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 31/137 (22%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H ++K GL+ +I ++N+LINLY K G + AR +FD+ VKS +WN+++SGYA G
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG- 274
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
LD A+ MF M + V S+ + +V+
Sbjct: 275 LDL------------------------------EALGMFYSMRLNYVRLSESSFASVIKL 304
Query: 153 CAALRALDIGRKIHLCV 169
CA L+ L ++H V
Sbjct: 305 CANLKELRFTEQLHCSV 321
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +H Q IK G + + +L++ Y K D R VFDEM ++ +W T++SGYAR
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARN 172
Query: 91 GKLDKALHVF----DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK---DKVSPSQ 143
D+ L +F +E +S ++ + + +++ +VK DK P
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVS 232
Query: 144 FTITNVLSSCAALRALDI 161
++ N+ C +R I
Sbjct: 233 NSLINLYLKCGNVRKARI 250
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWN-----TILSGYAR 89
++ K G+ + + ++++N+ A + + F +KS + +L+ YA+
Sbjct: 483 GELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK 542
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
+G ++ A VF ++D VSW +MI GY Q A+ +F +M K KV T V
Sbjct: 543 KGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGV 602
Query: 150 LSSCAALRALDIGRK 164
++C ++ G K
Sbjct: 603 FAACTHAGLVEEGEK 617
>AT4G25270.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:12937253-12938836 REVERSE
Length = 527
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 64/204 (31%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
++ + ++IH ++K G + +Y+ N L+ +YAK G IV ARNVFD +P K SWN++L+
Sbjct: 210 SVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLT 269
Query: 86 GYARQGKLDKALHVFDEI------PDRDSVS-----------------WT---------- 112
GY G L +AL +F + PD+ ++S W
Sbjct: 270 GYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKHGRQLHGWVIRRGMEWELS 329
Query: 113 ---TMIVGYNQ-----MACF-----------------------ENAIKMFVDMVKDKVSP 141
+IV Y++ ACF N +K F M + P
Sbjct: 330 VANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRANAKP 389
Query: 142 SQFTITNVLSSCAALRALDIGRKI 165
T +VLS CA ++ G ++
Sbjct: 390 DGITFVSVLSLCANTGMVEDGERL 413
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 87 YARQGKLDKALHVFDEIPDRDS--VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
YA G + A VFD + RDS +W ++I GY ++ +E+A+ ++ M +D V P +F
Sbjct: 137 YASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRF 196
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T VL +C + ++ IG IH
Sbjct: 197 TFPRVLKACGGIGSVQIGEAIH 218
>AT1G77170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28998133-28999536 REVERSE
Length = 467
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 31/153 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+++ ++ + ++ K +H+ ++LG + + I LY K+G +AR VFDE P +
Sbjct: 123 VIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERK 182
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
SWN I+ G G+ ++ A++MFVDM +
Sbjct: 183 LGSWNAIIGGLNHAGRANE-------------------------------AVEMFVDMKR 211
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+ P FT+ +V +SC L L + ++H CV
Sbjct: 212 SGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCV 244
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++ Y + G++D A H+F+E+ R+ VSW++MIVGY A++ F M + V
Sbjct: 259 NSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVR 318
Query: 141 PSQFTITNVLSSC 153
P++ T VLS+C
Sbjct: 319 PNKITFVGVLSAC 331
>AT1G56570.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:21195804-21197721 FORWARD
Length = 611
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
P K ++ Y +G +++A +FDE+PDRD V+WT MI GY A + F
Sbjct: 41 PKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFH 100
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+MVK SP++FT+++VL SC ++ L G +H V
Sbjct: 101 EMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVV 137
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 32/141 (22%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+++ K IHA +IK G ++ + N++++LY + GY+ +A++ F EM K +WNT++S
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLIS 287
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
E+ DS A+ MF P+ +T
Sbjct: 288 ----------------ELERSDS----------------SEALLMFQRFESQGFVPNCYT 315
Query: 146 ITNVLSSCAALRALDIGRKIH 166
T+++++CA + AL+ G+++H
Sbjct: 316 FTSLVAACANIAALNCGQQLH 336
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 32/139 (23%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L+ + +H ++ + G N ++ L N LI++YAK G I D++
Sbjct: 329 LNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQ-------------------- 368
Query: 87 YARQGKLDKALHVFDEIPDRDS-VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
VF EI DR + VSWT+M++GY A+++F MV + P +
Sbjct: 369 -----------RVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIV 417
Query: 146 ITNVLSSCAALRALDIGRK 164
VLS+C ++ G K
Sbjct: 418 FMAVLSACRHAGLVEKGLK 436
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 36/159 (22%)
Query: 16 FLLQTNLKS----KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARN-VFD 70
F L + LKS K L+ +H ++KLG+ S+Y+ N ++N+YA ++A +F
Sbjct: 112 FTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFR 171
Query: 71 EMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKM 130
++ VK+ +W T+++G+ H+ D I +KM
Sbjct: 172 DIKVKNDVTWTTLITGFT---------HLGDGI----------------------GGLKM 200
Query: 131 FVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+ M+ + + + IT + + A++ ++ G++IH V
Sbjct: 201 YKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASV 239
>AT5G13230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:4222514-4224982 FORWARD
Length = 822
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +H ++K+G + IY++N LI++YAK
Sbjct: 368 EQLHGLVVKVGFDLDIYVSNALIDVYAKCE------------------------------ 397
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
K+D A+ +F E+ ++ VSW T+IVGY + A MF + ++++VS ++ T ++ L
Sbjct: 398 -KMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSAL 456
Query: 151 SSCAALRALDIGRKIH 166
+CA+L ++D+G ++H
Sbjct: 457 GACASLASMDLGVQVH 472
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 20 TNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS 79
+L S +L V +H IK + ++N+LI++YAK G I A++VF+EM S
Sbjct: 460 ASLASMDLGV--QVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVAS 517
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDRD----SVSWTTMIVGYNQMACFENAIKMFVDMV 135
WN ++SGY+ G +AL + D + DRD +++ ++ G + + + F M+
Sbjct: 518 WNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMI 577
Query: 136 KD 137
+D
Sbjct: 578 RD 579
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
+L Y + G + A VF+E+P D V W+ MI + Q A+ +F+ M + V P+
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPN 347
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
+FT++++L+ CA + +G ++H
Sbjct: 348 EFTLSSILNGCAIGKCSGLGEQLH 371
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y +L+ ++ + K+IH ++K G ++ TN L+N Y K+G+ DA N+FDEMP
Sbjct: 52 YGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMP 111
Query: 74 VKSTFSWNTILSGYARQ 90
++ S+ T+ GYA Q
Sbjct: 112 ERNNVSFVTLAQGYACQ 128
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK-V 139
N+++ YA+ G + A VF+E+ D SW +I GY+ A+++ +D++KD+
Sbjct: 488 NSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRI-LDIMKDRDC 546
Query: 140 SPSQFTITNVLSSCAALRALDIGRK 164
P+ T VLS C+ +D G++
Sbjct: 547 KPNGLTFLGVLSGCSNAGLIDQGQE 571
>AT2G39620.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:16518968-16521478 REVERSE
Length = 836
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
+++S Y++ G+L+ A +F I DRD VSW+ MI Y Q + AI +F DM++ + P
Sbjct: 340 SLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKP 399
Query: 142 SQFTITNVLSSCAALRALDIGRKIH 166
+ T+T+VL CA + A +G+ IH
Sbjct: 400 NAVTLTSVLQGCAGVAASRLGKSIH 424
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F L+ S + IH + ++GL +Y+ L+ +Y K+ +V AR VFD+M
Sbjct: 103 FTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMH 162
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQM 121
VK +WNT++SG A+ G AL +F ++ D D VS +I +++
Sbjct: 163 VKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKL 214
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L V S+H+ +I+ G + N+L+++YAK G I + F E+ K SWNT+LS
Sbjct: 620 LRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSA 679
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDM 134
YA G A+ +F + + DSVS+ +++ E ++F +M
Sbjct: 680 YAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEM 731
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 29 VCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYA 88
VC+ +H +IK G F+ ++ LI++Y + A +VF+E+ K SW T+++ YA
Sbjct: 219 VCRCLHGLVIKKGFIFA--FSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYA 276
Query: 89 RQGKLDKALHVFDEIPDRD 107
G ++ L +FD + + D
Sbjct: 277 HNGFFEEVLELFDLMRNYD 295
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++ YA+ G ++ + F EI ++ VSW TM+ Y A+ +F+ M ++++
Sbjct: 643 NSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELK 702
Query: 141 PSQFTITNVLSSCAALRALDIGRKI 165
P + +VLS+C ++ G++I
Sbjct: 703 PDSVSFLSVLSACRHAGLVEEGKRI 727
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
KSIH IK + + +I++YAK G A F+ +P+K ++N + GY +
Sbjct: 421 KSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQI 480
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACF 124
G +KA V+ + + +VG Q F
Sbjct: 481 GDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAF 514
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
++S YA+ G+ AL F+ +P +D+V++ + GY Q+ A ++ +M V P
Sbjct: 441 AVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCP 500
Query: 142 SQFTITNVLSSCA 154
T+ +L +CA
Sbjct: 501 DSRTMVGMLQTCA 513
>AT2G33680.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14249608-14251791 FORWARD
Length = 727
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 31/151 (20%)
Query: 16 FLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK 75
F +++L+S +V + HA ++K+ IY+ +L+ +Y K+G + D VF MP +
Sbjct: 125 FKAESSLQSS--TVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPER 182
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
+T++W+T++SGYA +G++++A+ VF+ +F+
Sbjct: 183 NTYTWSTMVSGYATRGRVEEAIKVFN----------------------------LFLRE- 213
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
K++ S S + T VLSS AA + +GR+IH
Sbjct: 214 KEEGSDSDYVFTAVLSSLAATIYVGLGRQIH 244
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 28/147 (19%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
+ +NL +++H Q+I+ G + I N L+N YAK G + A ++F+ + K SWN+
Sbjct: 26 QQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNS 85
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
+++GY++ G + S S+T M ++F +M + P+
Sbjct: 86 LITGYSQNGGI--------------SSSYTVM--------------QLFREMRAQDILPN 117
Query: 143 QFTITNVLSSCAALRALDIGRKIHLCV 169
+T+ + + ++L++ +GR+ H V
Sbjct: 118 AYTLAGIFKAESSLQSSTVGRQAHALV 144
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 55/86 (63%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N +++ Y++ L++A +FD DR+S++W+ M+ GY+Q A+K+F M +
Sbjct: 260 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIK 319
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
PS++TI VL++C+ + L+ G+++H
Sbjct: 320 PSEYTIVGVLNACSDICYLEEGKQLH 345
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K +H+ ++KLG ++ T L+++YAK+G + DAR
Sbjct: 342 KQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKG---------------------- 379
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
FD + +RD WT++I GY Q + E A+ ++ M + P+ T+ +VL
Sbjct: 380 ---------FDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVL 430
Query: 151 SSCAALRALDIGRKIH 166
+C++L L++G+++H
Sbjct: 431 KACSSLATLELGKQVH 446
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + K +H IK G + + + L +Y+K G + D VF P K SWN ++SG
Sbjct: 439 LELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISG 498
Query: 87 YARQGKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
+ G+ D+AL +F+E+ + D V++ +I + E + +M+ D++
Sbjct: 499 LSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGW-FYFNMMSDQIG 555
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 71 EMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKM 130
E+P+ S S + Y++ G L+ VF P++D VSW MI G + + A+++
Sbjct: 457 EVPIGSALS-----TMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALEL 511
Query: 131 FVDMVKDKVSPSQFTITNVLSSCA 154
F +M+ + + P T N++S+C+
Sbjct: 512 FEEMLAEGMEPDDVTFVNIISACS 535
>AT4G39530.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:18374736-18377240 REVERSE
Length = 834
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IHA +++ GL L N LI+ Y K G ++ A +
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKL---------------------- 306
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
F+ +P+++ +SWTT++ GY Q A + A+++F M K + P + +++L
Sbjct: 307 ---------FNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSIL 357
Query: 151 SSCAALRALDIGRKIH 166
+SCA+L AL G ++H
Sbjct: 358 TSCASLHALGFGTQVH 373
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 31/150 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL+ + +L + K IH M K GLN I+ + LI++Y+ + D+R VFDEM VK
Sbjct: 460 LLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKD 519
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
WN++ +GY +Q + ++AL++F E+ Q++
Sbjct: 520 LVIWNSMFAGYVQQSENEEALNLFLEL----------------QLS-------------- 549
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ P +FT N++++ L ++ +G++ H
Sbjct: 550 -RERPDEFTFANMVTAAGNLASVQLGQEFH 578
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 30/143 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+A LLQ L +H Q+I GL YL+N LINLY+++G +V AR VF++MP
Sbjct: 47 FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMP 106
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
++ SW+T++S G +++L VF E W T
Sbjct: 107 ERNLVSWSTMVSACNHHGIYEESLVVFLEF-------WRT-------------------- 139
Query: 134 MVKDKVSPSQFTITNVLSSCAAL 156
K SP+++ +++ + +C+ L
Sbjct: 140 ---RKDSPNEYILSSFIQACSGL 159
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y + G +D A VFD +P++ +V+WTTMI G +M ++++F +++D V P + +
Sbjct: 193 YLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYIL 252
Query: 147 TNVLSSCAALRALDIGRKIH 166
+ VLS+C+ L L+ G++IH
Sbjct: 253 STVLSACSILPFLEGGKQIH 272
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 21 NLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSW 80
NL S L + H Q++K GL + Y+TN L+++YAK G DA FD + W
Sbjct: 567 NLASVQLG--QEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCW 624
Query: 81 NTILSGYARQGKLDKALHVFD----EIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
N+++S YA G+ KAL + + E + + +++ ++ + E+ +K F M++
Sbjct: 625 NSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR 684
Query: 137 DKVSPS 142
+ P
Sbjct: 685 FGIEPE 690
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 28/140 (20%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L +HA IK L Y+TN+LI++YAK + DAR VFD +N ++ G
Sbjct: 366 LGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEG 425
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y+R G W A+ +F DM + PS T
Sbjct: 426 YSRLG-----------------TQWE-----------LHEALNIFRDMRFRLIRPSLLTF 457
Query: 147 TNVLSSCAALRALDIGRKIH 166
++L + A+L +L + ++IH
Sbjct: 458 VSLLRASASLTSLGLSKQIH 477
>AT3G03580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:860695-863343 REVERSE
Length = 882
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 31/134 (23%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
++ Q++ +G +++ N L+++Y++ G + AR VFDEMPV+ SWN+++SGY+ G
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGY 187
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
++AL ++ E+ + SW + P FT+++VL +
Sbjct: 188 YEEALEIYHELKN----SW---------------------------IVPDSFTVSSVLPA 216
Query: 153 CAALRALDIGRKIH 166
L + G+ +H
Sbjct: 217 FGNLLVVKQGQGLH 230
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
++LS+ K I+ M+K G + N LI++YAK G ++ AR+VF+ M K T SWN+I+
Sbjct: 321 RDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSII 380
Query: 85 SGYARQGKLDKALHVF 100
SGY + G L +A+ +F
Sbjct: 381 SGYIQSGDLMEAMKLF 396
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+ + + +L K +H+ IK G+ + ++N LI++YAK G + D+ +F M
Sbjct: 411 YLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG 470
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
T +WNT++S R G F +++
Sbjct: 471 TGDTVTWNTVISACVRFGD-------------------------------FATGLQVTTQ 499
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
M K +V P T L CA+L A +G++IH C+
Sbjct: 500 MRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCL 535
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 40/156 (25%)
Query: 50 NNLINLYAKSGYIVDARNVFDEMP----VKSTFSWNTILSGYA-----RQG--------- 91
N+LI+ Y+ GY +A ++ E+ V +F+ +++L + +QG
Sbjct: 176 NSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALK 235
Query: 92 ---------------------KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKM 130
+ A VFDE+ RDSVS+ TMI GY ++ E +++M
Sbjct: 236 SGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRM 295
Query: 131 FVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
F++ + D+ P T+++VL +C LR L + + I+
Sbjct: 296 FLENL-DQFKPDLLTVSSVLRACGHLRDLSLAKYIY 330
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 12 DLYAFLLQ----TNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARN 67
D+ FL+ +L +K L K IH +++ G + + N LI +Y+K G + ++
Sbjct: 508 DMATFLVTLPMCASLAAKRLG--KEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSR 565
Query: 68 VFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQ--- 120
VF+ M + +W ++ Y G+ +KAL F ++ DSV + +I +
Sbjct: 566 VFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGL 625
Query: 121 ----MACFEN 126
+ACFE
Sbjct: 626 VDEGLACFEK 635
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ Y++ G L+ + VF+ + RD V+WT MI Y E A++ F DM K +
Sbjct: 548 NALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIV 607
Query: 141 PSQFTITNVLSSCAALRALDIG 162
P ++ +C+ +D G
Sbjct: 608 PDSVVFIAIIYACSHSGLVDEG 629
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 32/148 (21%)
Query: 16 FLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM-PV 74
F+ + S NL+ + IHA +I LGL+ S + + LI+ Y+ + +VF + P
Sbjct: 9 FISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPA 68
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
K+ + WN+I I +++ F A++ + +
Sbjct: 69 KNVYLWNSI-------------------------------IRAFSKNGLFPEALEFYGKL 97
Query: 135 VKDKVSPSQFTITNVLSSCAALRALDIG 162
+ KVSP ++T +V+ +CA L ++G
Sbjct: 98 RESKVSPDKYTFPSVIKACAGLFDAEMG 125
>AT3G13770.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4519647-4521533 FORWARD
Length = 628
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LL L + L + +HA MIK + YL L+ Y K + DAR V D
Sbjct: 55 YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLD--- 111
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
E+P+++ VSWT MI Y+Q A+ +F +
Sbjct: 112 ----------------------------EMPEKNVVSWTAMISRYSQTGHSSEALTVFAE 143
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M++ P++FT VL+SC L +G++IH
Sbjct: 144 MMRSDGKPNEFTFATVLTSCIRASGLGLGKQIH 176
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 78/153 (50%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+A +L + +++ L + K IH ++K + I++ ++L+++YAK+
Sbjct: 156 FATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKA-------------- 201
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
G++ +A +F+ +P+RD VS T +I GY Q+ E A++MF
Sbjct: 202 -----------------GQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHR 244
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + +SP+ T ++L++ + L LD G++ H
Sbjct: 245 LHSEGMSPNYVTYASLLTALSGLALLDHGKQAH 277
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 30/135 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K H +++ L F L N+LI++Y+K G + AR +FD MP ++ SWN +L GY++
Sbjct: 274 KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKH 333
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G + L +F + D + +V P T+ VL
Sbjct: 334 GLGREVLELFRLMRD------------------------------EKRVKPDAVTLLAVL 363
Query: 151 SSCAALRALDIGRKI 165
S C+ R D G I
Sbjct: 364 SGCSHGRMEDTGLNI 378
>AT5G52850.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:21414935-21417616 REVERSE
Length = 893
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 39/151 (25%)
Query: 27 LSVCKS--------IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTF 78
LS C+S IH +IK GL ++ L NNL++LY K+ I +AR +FDEM ++ F
Sbjct: 31 LSFCESNSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVF 90
Query: 79 SWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK 138
+W ++S + + + AL +F+E M+
Sbjct: 91 AWTVMISAFTKSQEFASALSLFEE-------------------------------MMASG 119
Query: 139 VSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
P++FT ++V+ SCA LR + G ++H V
Sbjct: 120 THPNEFTFSSVVRSCAGLRDISYGGRVHGSV 150
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L K +H +K G + + + N+L+++Y+K G + DA+ VF+E+ SWN ++SG
Sbjct: 544 LETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSG 603
Query: 87 YARQGKLDKALHVFDEI----PDRDSVSWTTMI 115
A G + AL F+E+ + DSV++ ++
Sbjct: 604 LASNGFISSALSAFEEMRMKETEPDSVTFLILL 636
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 31/141 (21%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
L K+IH+ +I G+ ++ L +L++ Y S FS
Sbjct: 239 GLEFGKTIHSNIIVRGIPLNVVLKTSLVDFY-------------------SQFS------ 273
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
K++ A+ V + ++D WT+++ G+ + + A+ F++M + P+ FT
Sbjct: 274 ------KMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFT 327
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+ +LS C+A+R+LD G++IH
Sbjct: 328 YSAILSLCSAVRSLDFGKQIH 348
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 74 VKSTFSWNTILSG-----YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI 128
+K+ F N+++ Y++ G+ +A +F + + D++SWT MI + A+
Sbjct: 151 IKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREAL 210
Query: 129 KMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + +MVK V P++FT +L + + L L+ G+ IH
Sbjct: 211 QFYSEMVKAGVPPNEFTFVKLLGASSFL-GLEFGKTIH 247
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 74 VKSTFSW-----NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI 128
VKS FS N+++ Y++ G L+ A VF+EI D VSW ++ G +A+
Sbjct: 555 VKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSAL 614
Query: 129 KMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
F +M + P T +LS+C+ R D+G
Sbjct: 615 SAFEEMRMKETEPDSVTFLILLSACSNGRLTDLG 648
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 66 RNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFE 125
R+V EM V N+++ YA K+D A +V + RD++++T+++ +N++ E
Sbjct: 456 RHVDGEMVVG-----NSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHE 510
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
A+ + M D + Q ++ +S+ A L AL+ G+ +H
Sbjct: 511 MALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLH 551
>AT1G03540.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:883782-885611 FORWARD
Length = 609
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 35/142 (24%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
+ L K IH ++I G+ ++ + ++L+++Y K G + +AR VF+ M K++ SW+ +L
Sbjct: 279 RRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALL 338
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
GY + G+ +KA+ +F E+ ++D + CF
Sbjct: 339 GGYCQNGEHEKAIEIFREMEEKD-------------LYCF-------------------- 365
Query: 145 TITNVLSSCAALRALDIGRKIH 166
VL +CA L A+ +G++IH
Sbjct: 366 --GTVLKACAGLAAVRLGKEIH 385
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 33/154 (21%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
DLY F +L+ + + K IH Q ++ G ++ + + LI+LY KSG I A V+
Sbjct: 361 DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVY 420
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIK 129
+M +++ +WN +LS A+ G+ E A+
Sbjct: 421 SKMSIRNMITWNAMLSALAQNGR-------------------------------GEEAVS 449
Query: 130 MFVDMVKDKVSPSQFTITNVLSSCAALRALDIGR 163
F DMVK + P + +L++C +D GR
Sbjct: 450 FFNDMVKKGIKPDYISFIAILTACGHTGMVDEGR 483
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG-----Y 87
+ +M+ GL+ + + ++ + ++ G + R F + + F WN +S Y
Sbjct: 150 VFVEMVSFGLDANEFTLSSAVKACSELGEVRLGR-CFHGVVITHGFEWNHFISSTLAYLY 208
Query: 88 ARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK-VSPSQFTI 146
+ A VFDE+P+ D + WT ++ +++ +E A+ +F M + K + P T
Sbjct: 209 GVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTF 268
Query: 147 TNVLSSCAALRALDIGRKIH 166
VL++C LR L G++IH
Sbjct: 269 GTVLTACGNLRRLKQGKEIH 288
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 32/155 (20%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSG-YIVDARNVFDE 71
LYA LLQT K + HA ++K GL + N+L++LY K G + + R VFD
Sbjct: 63 LYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDG 122
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
VK SW +++SGY + KAL V F
Sbjct: 123 RFVKDAISWTSMMSGYVTGKEHVKALEV-------------------------------F 151
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
V+MV + ++FT+++ + +C+ L + +GR H
Sbjct: 152 VEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFH 186
>AT4G21065.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT4G33170.1); Has 16184 Blast hits to 5257
proteins in 175 species: Archae - 0; Bacteria - 4;
Metazoa - 118; Fungi - 47; Plants - 15742; Viruses - 0;
Other Eukaryotes - 273 (source: NCBI BLink). |
chr4:11246375-11247763 FORWARD
Length = 462
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 31/142 (21%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
++ + ++IH+ +I+ G IY+ N+L++LYA G + A
Sbjct: 3 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYK------------------ 44
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
VFD++P++D V+W ++I G+ + E A+ ++ +M + P FT
Sbjct: 45 -------------VFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFT 91
Query: 146 ITNVLSSCAALRALDIGRKIHL 167
I ++LS+CA + AL +G+++H+
Sbjct: 92 IVSLLSACAKIGALTLGKRVHV 113
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL K L++ K +H MIK+GL +++ +N L++LYA+ G + +A+ +FDEM K+
Sbjct: 95 LLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN 154
Query: 77 TFSWNTILSGYARQGKLDKALHVF 100
+ SW +++ G A G +A+ +F
Sbjct: 155 SVSWTSLIVGLAVNGFGKEAIELF 178
>AT3G24000.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: shoot apex, carpel; EXPRESSED DURING:
petal differentiation and expansion stage; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT3G23330.1); Has 15874 Blast hits to 5333
proteins in 187 species: Archae - 1; Bacteria - 6;
Metazoa - 100; Fungi - 81; Plants - 15349; Viruses - 0;
Other Eukaryotes - 337 (source: NCBI BLink). |
chr3:8672774-8674881 FORWARD
Length = 665
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
NT+L+ YA+ G L++A VF+++P RD V+WTT+I GY+Q +A+ F M++ S
Sbjct: 99 NTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS 158
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH-LCV 169
P++FT+++V+ + AA R G ++H CV
Sbjct: 159 PNEFTLSSVIKAAAAERRGCCGHQLHGFCV 188
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
YA L + L K +HA MIK G + N L+++YAKSG I DAR +FD +
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIK 129
+ SWN++L+ YA+ G +A+ F+E+ + +S+ +++ + +
Sbjct: 325 KRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384
Query: 130 MFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
+ M KD + P + V+ RA D+ R +
Sbjct: 385 YYELMKKDGIVPEAWHYVTVVDLLG--RAGDLNRAL 418
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
+ +L Y R G +D A VFD + R+ VSW +I G+ + + E A+++F M++D
Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR 259
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
PS F+ ++ +C++ L+ G+ +H
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVH 285
>AT2G02750.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:771641-773482 REVERSE
Length = 613
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP-VKSTFSWNTIL 84
NL + +H ++K F + LI++Y+K A VF E+ ++ SWN+++
Sbjct: 246 NLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVI 305
Query: 85 SGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
SG G+ + A+ +F+++ DS +W ++I G++Q+ A K F M+ +
Sbjct: 306 SGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMV 365
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
PS +T++LS+C+ + L G++IH
Sbjct: 366 PSLKCLTSLLSACSDIWTLKNGKEIH 391
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 33/137 (24%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFD--EMPVKSTFSWNTILSGYA 88
K IH +IK I++ +LI++Y K G AR +FD E K WN ++SGY
Sbjct: 388 KEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYG 447
Query: 89 RQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITN 148
+ G+ + A+ +F+ + + +KV PS T T
Sbjct: 448 KHGECESAIEIFELLRE-------------------------------EKVEPSLATFTA 476
Query: 149 VLSSCAALRALDIGRKI 165
VLS+C+ ++ G +I
Sbjct: 477 VLSACSHCGNVEKGSQI 493
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ LL++ K ++ + +HAQ++K G ++ L+++Y K + DA V DEMP
Sbjct: 34 FPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMP 93
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDE 102
+ S N +SG G A +F +
Sbjct: 94 ERGIASVNAAVSGLLENGFCRDAFRMFGD 122
>AT4G15720.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:8949569-8951419 FORWARD
Length = 616
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 39 KLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALH 98
KL + + TN L L K G+ D TF+ N ++ Y + +++ A
Sbjct: 38 KLSESTNAAFTNLLHTLTLKLGFASD------------TFTVNHLVISYVKLKEINTARK 85
Query: 99 VFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDK-VSPSQFTITNVLSSCAALR 157
+FDE+ + + VSWT++I GYN M +NA+ MF M +D+ V P+++T +V +C+AL
Sbjct: 86 LFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTFASVFKACSALA 145
Query: 158 ALDIGRKIH 166
IG+ IH
Sbjct: 146 ESRIGKNIH 154
>AT3G23330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:8347200-8349347 FORWARD
Length = 679
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH +I+ G++ +Y+ ++L+++YAKS I D+ V
Sbjct: 226 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV---------------------- 263
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
F + RD +SW +++ GY Q + A+++F MV KV P ++V+
Sbjct: 264 ---------FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVI 314
Query: 151 SSCAALRALDIGRKIH 166
+CA L L +G+++H
Sbjct: 315 PACAHLATLHLGKQLH 330
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 31/141 (21%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L +S+H +++LG++ +Y N L+N+YAK + R VF+ MP K S+NTI++
Sbjct: 120 DLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMDSVRRVFEVMPRKDVVSYNTIIA 179
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
GYA+ G +E+A++M +M + P FT
Sbjct: 180 GYAQSG-------------------------------MYEDALRMVREMGTTDLKPDSFT 208
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+++VL + + G++IH
Sbjct: 209 LSSVLPIFSEYVDVIKGKEIH 229
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + K +H +++ G +I++ + L+++Y+K G I AR +FD M V SW I+ G
Sbjct: 323 LHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMG 382
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
+A G +A+ +F+E+ + + V++ ++ + + + A F M K
Sbjct: 383 HALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 436
>AT2G36730.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15405068-15406573 REVERSE
Length = 501
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ FLL+ L+ + I +++K G +F +Y+ NNLI+LY DAR VFDEM
Sbjct: 116 FPFLLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMT 175
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDE-IPDRDSVSWTTMIV 116
++ SWN+I++ GKL+ F E I R TTM+V
Sbjct: 176 ERNVVSWNSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVV 219
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
NLS+ K +H+Q++ L + L L+++YAKSG + AR VF+ M K+ ++W+ ++
Sbjct: 227 NLSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIV 286
Query: 86 GYARQGKLDKALHVFDEIPDRDS-----VSWTTMIVGYNQMACFENAIKMFVDMVK-DKV 139
G A+ G ++AL +F ++ S V++ ++ + ++ K F +M K K+
Sbjct: 287 GLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKI 346
Query: 140 SP 141
P
Sbjct: 347 KP 348
>AT1G74600.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28025153-28027840 REVERSE
Length = 895
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 43/166 (25%)
Query: 13 LYAFLLQTNLKSKNLSVC------------KSIHAQMIKLGLNFSIYLTNNLINLYAKSG 60
L+ +LQ L++ SVC K +H +K GL + + ++L LY+K G
Sbjct: 440 LFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCG 499
Query: 61 YIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQ 120
L+++ +F IP +D+ W +MI G+N+
Sbjct: 500 -------------------------------SLEESYKLFQGIPFKDNACWASMISGFNE 528
Query: 121 MACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
AI +F +M+ D SP + T+ VL+ C++ +L G++IH
Sbjct: 529 YGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIH 574
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y+ +L + L K + A++IK G +++ +++LYAK G++ +A VF +P
Sbjct: 254 YSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIP 312
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEI 103
S SW +LSGY + AL +F E+
Sbjct: 313 NPSVVSWTVMLSGYTKSNDAFSALEIFKEM 342
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 60 GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
G +V AR + + + F I+ YA+ G + +A+ VF IP+ VSWT M+ GY
Sbjct: 270 GKVVQARVI--KCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYT 327
Query: 120 QMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ +A+++F +M V + T+T+V+S+C + ++H
Sbjct: 328 KSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVH 374
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 69 FDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI 128
FD KS SW Y+ G + A +FD IP D VS MI GY Q FE ++
Sbjct: 82 FDVFLTKSLLSW------YSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESL 135
Query: 129 KMFVDMVKDKVSPSQFTITNVLSSCAALRA 158
+ F M ++ + +V+S+C+AL+A
Sbjct: 136 RFFSKMHFLGFEANEISYGSVISACSALQA 165
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 71/219 (32%)
Query: 19 QTNLKSKNLSVCKSIHAQMIK-LGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST 77
Q+N + NL K + A +++ L F ++LT +L++ Y+ SG + DA +FD +P
Sbjct: 56 QSNSRLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDV 115
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVG--------YNQMAC-- 123
S N ++SGY + +++L F ++ + + +S+ ++I ++++ C
Sbjct: 116 VSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCH 175
Query: 124 -------------------------FENAIKMFVDMVKDKV------------------- 139
FE+A K+F D + V
Sbjct: 176 TIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAV 235
Query: 140 ------------SPSQFTITNVLSSCAALRALDIGRKIH 166
P +T ++VL++CA+L L G+ +
Sbjct: 236 FDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQ 274
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 15 AFLLQTNLKSKNLS----VCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFD 70
+F + + LK+ LS + +HA + K+GL + ++L+ +Y+K G I D F
Sbjct: 652 SFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFS 711
Query: 71 EMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFEN 126
++ +W +++ YA+ GK ++AL V++ + ++ D V++ ++ + E
Sbjct: 712 QINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEE 771
Query: 127 AIKMFVDMVKD 137
+ MVKD
Sbjct: 772 SYFHLNSMVKD 782
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH ++ G++ + L + L+N+Y+K G + AR V+D +P S ++++SGY++
Sbjct: 571 KEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQH 630
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G + ++ +F DMV + F I+++L
Sbjct: 631 GLI-------------------------------QDGFLLFRDMVMSGFTMDSFAISSIL 659
Query: 151 SSCAALRALDIGRKIH 166
+ A +G ++H
Sbjct: 660 KAAALSDESSLGAQVH 675
>AT3G53360.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:19784502-19786808 FORWARD
Length = 768
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 56/86 (65%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ILS Y + G L A VFD +P+R+ VS+T++I GY+Q AI++++ M+++ +
Sbjct: 106 NHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLV 165
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P QF +++ +CA+ + +G+++H
Sbjct: 166 PDQFAFGSIIKACASSSDVGLGKQLH 191
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL+ ++ +L + +H +K GL ++ N LI++YAK G + AR +FD M +
Sbjct: 479 LLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRD 538
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFV 132
SW+T++ GYA+ G ++AL +F E+ + + V++ ++ + + E +K++
Sbjct: 539 VVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYA 598
Query: 133 DM-VKDKVSPSQ 143
M + +SP++
Sbjct: 599 TMQTEHGISPTK 610
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IH IK L + +L ++YA+ G++ AR VFD++ T SWN I++G A G
Sbjct: 292 IHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGY 351
Query: 93 LDKALHVFDE------IPD 105
D+A+ VF + IPD
Sbjct: 352 ADEAVSVFSQMRSSGFIPD 370
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 37/163 (22%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D +AF +++ S ++ + K +HAQ+IKL + + N LI +Y + + DA VF
Sbjct: 167 DQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVF 226
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFE-NAI 128
+P+K SW++I++G+++ G FE A+
Sbjct: 227 YGIPMKDLISWSSIIAGFSQLG--------------------------------FEFEAL 254
Query: 129 KMFVDMVKDKV-SPSQFTITNVLSSCAALRALDIGRKIH-LCV 169
+M+ V P+++ + L +C++L D G +IH LC+
Sbjct: 255 SHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCI 297
>AT4G18520.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9
growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT4G39530.1); Has
16698 Blast hits to 4567 proteins in 114 species: Archae
- 0; Bacteria - 4; Metazoa - 97; Fungi - 32; Plants -
16266; Viruses - 0; Other Eukaryotes - 299 (source: NCBI
BLink). | chr4:10215250-10217103 REVERSE
Length = 617
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K +HAQ+IK + ++Y+ + L+ LY K G ++R+ F+
Sbjct: 405 KELHAQIIKNSIEKNVYIGSTLVWLYCKCG---ESRDAFN-------------------- 441
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
V ++P RD VSWT MI G + + A+ +M+++ V P+ FT ++ L
Sbjct: 442 --------VLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSAL 493
Query: 151 SSCAALRALDIGRKIH 166
+CA +L IGR IH
Sbjct: 494 KACANSESLLIGRSIH 509
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 52 LINLYAKSGYIVDARNVFDEM---PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDS 108
L+NL ++ R V M V + ++++ YA+ G+L AL FD + ++D
Sbjct: 190 LLNLCSRRAEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDV 249
Query: 109 VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+SWT +I ++ AI MF+ M+ P++FT+ ++L +C+ +AL GR++H
Sbjct: 250 ISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVH 307
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 31/150 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L+ + K L + +H+ ++K + +++ +L+++YAK G I D R VFD M ++
Sbjct: 290 ILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRN 349
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
T +W +I++ +AR+G F E AI +F M +
Sbjct: 350 TVTWTSIIAAHAREG--------FG-----------------------EEAISLFRIMKR 378
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + T+ ++L +C ++ AL +G+++H
Sbjct: 379 RHLIANNLTVVSILRACGSVGALLLGKELH 408
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
YA L + S + + K IHA +K + IY NNLI+ + G +V AR VFD MP
Sbjct: 85 YALLAEWLQSSNGMRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMP 144
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDE 102
K+T +W ++ GY + G D+A +F++
Sbjct: 145 EKNTVTWTAMIDGYLKYGLEDEAFALFED 173
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y+ L+ S++L + +SIH+ K ++++ + LI++YAK G++ +A VFD MP
Sbjct: 489 YSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMP 548
Query: 74 VKSTFSWNTILSGYARQGKLDKAL 97
K+ SW ++ GYAR G +AL
Sbjct: 549 EKNLVSWKAMIMGYARNGFCREAL 572
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 36 QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFD----EMPVKSTFSWNTILSGYARQG 91
+MI+ G+ + + ++ + A S ++ R++ + + F + ++ YA+ G
Sbjct: 476 EMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCG 535
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
+ +A VFD +P+++ VSW MI+GY + A+K+ M + + +LS
Sbjct: 536 FVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILS 595
Query: 152 SCA 154
+C
Sbjct: 596 TCG 598
>AT1G15510.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:5329111-5331711 FORWARD
Length = 866
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 33/157 (21%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D+Y F +L+T +L+ K +H +++ G I + N LI +Y K G + AR +F
Sbjct: 195 DVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLF 254
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIK 129
D MP + SWN ++SGY G C E ++
Sbjct: 255 DRMPRRDIISWNAMISGYFENG------------------------------MCHE-GLE 283
Query: 130 MFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+F M V P T+T+V+S+C L +GR IH
Sbjct: 284 LFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIH 320
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IHA +I G I + N+L +Y +G +A +F M K SW T++SGY
Sbjct: 317 RDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYE-- 374
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
++ +PD+ AI + M +D V P + T+ VL
Sbjct: 375 ---------YNFLPDK--------------------AIDTYRMMDQDSVKPDEITVAAVL 405
Query: 151 SSCAALRALDIGRKIH 166
S+CA L LD G ++H
Sbjct: 406 SACATLGDLDTGVELH 421
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 30/127 (23%)
Query: 43 NFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDE 102
+ + L N + ++ + G +VDA VF +M ++ FSWN ++ GYA+QG D+A+ +
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCL--- 182
Query: 103 IPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
Y++M ++V VK P +T VL +C + L G
Sbjct: 183 ---------------YHRM--------LWVGGVK----PDVYTFPCVLRTCGGIPDLARG 215
Query: 163 RKIHLCV 169
+++H+ V
Sbjct: 216 KEVHVHV 222
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IHA +++ G+ +L N L+++Y + G + A + F+ K SWN +L+GY+ +
Sbjct: 518 KEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSER 576
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
G+ + +FD + D +++ +++ G ++ + F M V+P+
Sbjct: 577 GQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPN 632
>AT1G69350.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:26069882-26072245 FORWARD
Length = 787
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 31/142 (21%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
++LSV +H ++IK G++ + +L+ +Y ++G + DA VFD MPV+ +W+T++
Sbjct: 115 EHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLV 174
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
S G++ KAL +F C MV D V P
Sbjct: 175 SSCLENGEVVKALRMFK---------------------C----------MVDDGVEPDAV 203
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T+ +V+ CA L L I R +H
Sbjct: 204 TMISVVEGCAELGCLRIARSVH 225
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 54/86 (62%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N++L+ Y++ G L + +F++I +++VSWT MI YN+ E A++ F +M+K +
Sbjct: 241 NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIE 300
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P+ T+ +VLSSC + + G+ +H
Sbjct: 301 PNLVTLYSVLSSCGLIGLIREGKSVH 326
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 84/188 (44%), Gaps = 42/188 (22%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM---- 72
L++ + LS C+++ +++ + +I N+LI+LYA G ++ A +F +M
Sbjct: 345 LVELYAECGKLSDCETV----LRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQR 400
Query: 73 ----------------------------------PVKSTFSWNTILSGYARQGKLDKALH 98
V F N+++ Y++ G +D A
Sbjct: 401 IKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSAST 460
Query: 99 VFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRA 158
VF++I R V+W +M+ G++Q AI +F M + ++ T V+ +C+++ +
Sbjct: 461 VFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGS 520
Query: 159 LDIGRKIH 166
L+ G+ +H
Sbjct: 521 LEKGKWVH 528
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 35 AQMIKLGLN------FSIYLTNNLINLYAKSGYIVDARNVFDEM-PVKSTFSWNTILSGY 87
++MIK G+ +S+ + LI L + G V V E+ P + S ++ Y
Sbjct: 292 SEMIKSGIEPNLVTLYSVLSSCGLIGLI-REGKSVHGFAVRRELDPNYESLSL-ALVELY 349
Query: 88 ARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTIT 147
A GKL V + DR+ V+W ++I Y A+ +F MV ++ P FT+
Sbjct: 350 AECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLA 409
Query: 148 NVLSSCAALRALDIGRKIH 166
+ +S+C + +G++IH
Sbjct: 410 SSISACENAGLVPLGKQIH 428
>AT3G28640.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:10731518-10732723 REVERSE
Length = 401
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 32/154 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFS-IYLTNNLINLYAKSGYIVDARNVFDEM 72
+ FL+ LK+ SV K IH ++K G+ S ++ ++ +Y + ++DAR VFDE+
Sbjct: 16 FHFLIVACLKACFFSVGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEI 75
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
P W+ +++GY R G + L VF E
Sbjct: 76 PQPDVVKWDVLMNGYVRCGLGSEGLEVFRE------------------------------ 105
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M+ + P +F++T L++CA + AL G+ IH
Sbjct: 106 -MLVKGLEPDEFSVTTALTACAQVGALAQGKWIH 138
>AT1G19290.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN:
12 plant structures; EXPRESSED DURING: 6 growth stages;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT5G55840.1); Has 31003 Blast hits to 6161
proteins in 194 species: Archae - 6; Bacteria - 22;
Metazoa - 935; Fungi - 736; Plants - 27904; Viruses - 0;
Other Eukaryotes - 1400 (source: NCBI BLink). |
chr1:6666249-6668963 FORWARD
Length = 904
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 81/150 (54%), Gaps = 12/150 (8%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+Y L+ ++ + +H MI++G+ + + N+LIN Y KSG +V+A +F M
Sbjct: 333 MYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRM 392
Query: 73 ------PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV----SWTTMIVGYNQMA 122
P T+ NT++ GY R G +D+AL + D++ ++ V ++ ++ GY+++
Sbjct: 393 NDWSLKPDHHTY--NTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIG 450
Query: 123 CFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
F + + ++ M+K V+ + + + +L +
Sbjct: 451 AFHDVLSLWKMMLKRGVNADEISCSTLLEA 480
>AT2G02980.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:868468-870279 FORWARD
Length = 603
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 33/157 (21%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D Y F LL+ +K L + +H +KLGL+ ++Y+ LIN+Y + + AR VF
Sbjct: 128 DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVF 187
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIK 129
D + +N +++GYAR+ + ++AL +F E
Sbjct: 188 DRIVEPCVVCYNAMITGYARRNRPNEALSLFRE--------------------------- 220
Query: 130 MFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M + P++ T+ +VLSSCA L +LD+G+ IH
Sbjct: 221 ----MQGKYLKPNEITLLSVLSSCALLGSLDLGKWIH 253
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
+A+ G LD A+ +F+++ +D+ +W+ MIV Y E ++ MF M + V P + T
Sbjct: 275 FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334
Query: 147 TNVLSSCAALRALDIGRK 164
+L++C+ ++ GRK
Sbjct: 335 LGLLNACSHTGRVEEGRK 352
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 21/120 (17%)
Query: 53 INLYAKSGYIVDAR------NVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR 106
I YA +I D N E P +S+ S YAR H+F+ + +
Sbjct: 48 IQAYAIKSHIEDVSFVAKLINFCTESPTESSMS-------YAR--------HLFEAMSEP 92
Query: 107 DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
D V + +M GY++ +FV++++D + P +T ++L +CA +AL+ GR++H
Sbjct: 93 DIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLH 152
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + K IH K + + LI+++AK G + DA ++F++M K T +W+ ++
Sbjct: 245 SLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIV 304
Query: 86 GYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMV-KDKVS 140
YA GK +K++ +F+ + D +++ ++ + E K F MV K +
Sbjct: 305 AYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364
Query: 141 PS 142
PS
Sbjct: 365 PS 366
>AT3G57430.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:21255731-21258403 REVERSE
Length = 890
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 11/103 (10%)
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
+ F NT++ Y+R GK+D A+ +F ++ DRD V+W TMI GY E+A+ + M
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497
Query: 135 --VKDKVS---------PSQFTITNVLSSCAALRALDIGRKIH 166
++ KVS P+ T+ +L SCAAL AL G++IH
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 37/161 (22%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNF-SIYLTNNLINLYAKSGYIVDARNV 68
D YAF LL+ +++ + K IHA + K G S+ + N L+NLY K G D V
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG---DFGAV 152
Query: 69 FDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI 128
+ VFD I +R+ VSW ++I +E A+
Sbjct: 153 YK----------------------------VFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 129 KMFVDMVKDKVSPSQFTITNVLSSCAAL---RALDIGRKIH 166
+ F M+ + V PS FT+ +V+++C+ L L +G+++H
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVH 225
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%)
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
++F NT+++ Y + GKL + + RD V+W T++ Q A++ +MV
Sbjct: 235 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 294
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ V P +FTI++VL +C+ L L G+++H
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELH 325
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 31/139 (22%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L+ K IHA IK L + + + L+++YAK G + +R VFD++P K+ +WN I+
Sbjct: 533 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMA 592
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y G + AI + M+ V P++ T
Sbjct: 593 YGMHGN-------------------------------GQEAIDLLRMMMVQGVKPNEVTF 621
Query: 147 TNVLSSCAALRALDIGRKI 165
+V ++C+ +D G +I
Sbjct: 622 ISVFAACSHSGMVDEGLRI 640
>AT3G28660.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:10739400-10740914 REVERSE
Length = 504
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 32/154 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFS-IYLTNNLINLYAKSGYIVDARNVFDEM 72
+ FL+ LK+ SV K IH ++K G+ S ++ ++ +Y + + DAR VFDE+
Sbjct: 119 FHFLIVACLKACFFSVGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEI 178
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
P W+ +++GY R G + L VF E
Sbjct: 179 PQPDVVKWDVLMNGYVRCGLGSEGLEVFKE------------------------------ 208
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M+ + P +F++T L++CA + AL G+ IH
Sbjct: 209 -MLVRGIEPDEFSVTTALTACAQVGALAQGKWIH 241
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPD 105
+++ L+++YAK G I A VF+++ ++ FSW ++ GYA G KA D I
Sbjct: 254 VFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIER 313
Query: 106 RDSVSWTTMIVGYNQMAC 123
D + ++++ AC
Sbjct: 314 EDGIKPDSVVLLGVLAAC 331
>AT2G46050.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:18939262-18941034 FORWARD
Length = 590
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 36/138 (26%)
Query: 27 LSVC-----KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWN 81
LS C K IHA + K+ F I + L+N+YAKS ++ DAR F+ M V++ SWN
Sbjct: 252 LSACRIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVSWN 311
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
++ G+A+ G+ A+++F M+ + + P
Sbjct: 312 AMIVGFAQNGE-------------------------------GREAMRLFGQMLLENLQP 340
Query: 142 SQFTITNVLSSCAALRAL 159
+ T +VLSSCA A+
Sbjct: 341 DELTFASVLSSCAKFSAI 358
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++S Y+R G L +AL F I + D VSWT++I E +++MF M++ K+
Sbjct: 381 NSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESMLQ-KLQ 439
Query: 141 PSQFTITNVLSSCA 154
P + T VLS+C+
Sbjct: 440 PDKITFLEVLSACS 453
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 24 SKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
S N+ +H M+K GL S + + +L++ Y K G IV+AR VF+ + + WN +
Sbjct: 155 STNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNAL 214
Query: 84 LSGYARQGKLDKAL 97
+S Y G +D+A
Sbjct: 215 VSSYVLNGMIDEAF 228
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+LS K H M+K G+ S++L N L+ Y K DA +FDEMP+++ +WN ++
Sbjct: 51 HLSDVKQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIH 110
Query: 86 GY-ARQGKLDKALH---------VFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
G R G + H +F ++ D VS+ +I + I++ MV
Sbjct: 111 GVIQRDGDTNHRAHLGFCYLSRILFTDV-SLDHVSFMGLIRLCTDSTNMKAGIQLHCLMV 169
Query: 136 KDKVSPSQFTITNVL 150
K + S F T+++
Sbjct: 170 KQGLESSCFPSTSLV 184
>AT2G33760.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14275800-14277551 FORWARD
Length = 583
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 31/140 (22%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L + K +H + G Y+ L+ Y+K G + AR VFD MP KS +WN+++SG
Sbjct: 123 LRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSG 182
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
+ + G D+ AI++F M + P T
Sbjct: 183 FEQNGLADE-------------------------------AIQVFYQMRESGFEPDSATF 211
Query: 147 TNVLSSCAALRALDIGRKIH 166
++LS+CA A+ +G +H
Sbjct: 212 VSLLSACAQTGAVSLGSWVH 231
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL ++ +S+ +H +I GL+ ++ L LINLY++ G + AR VFD+M +
Sbjct: 214 LLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETN 273
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPD 105
+W ++S Y G +A+ +F+++ D
Sbjct: 274 VAAWTAMISAYGTHGYGQQAVELFNKMED 302
>AT3G14730.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4949385-4951346 REVERSE
Length = 653
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 32/142 (22%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
LS K +H KLG + Y+ + L+ Y+K + DA+ VF
Sbjct: 175 ELSDVKKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVF---------------- 218
Query: 86 GYARQGKLDKALHVFDEIPDRD-SVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
DE+PDRD SV W ++ GY+Q+ FE+A+ +F M ++ V S+
Sbjct: 219 ---------------DELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRH 263
Query: 145 TITNVLSSCAALRALDIGRKIH 166
TIT+VLS+ +D GR IH
Sbjct: 264 TITSVLSAFTVSGDIDNGRSIH 285
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 35/151 (23%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGL----NFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+L T + +L + IH MI GL + + ++ N+L+++Y K G + DAR VFD M
Sbjct: 369 VLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSM 428
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
VK + SWN +++GY Q +C E A+ MF
Sbjct: 429 RVKDSASWNIMINGYGVQ-------------------------------SCGELALDMFS 457
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGR 163
M + V P + T +L +C+ L+ GR
Sbjct: 458 CMCRAGVKPDEITFVGLLQACSHSGFLNEGR 488
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 31/143 (21%)
Query: 24 SKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
S ++ +SIH +K G I ++N LI++Y KS ++ +A ++F+ M + F+WN++
Sbjct: 275 SGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSV 334
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
L V D D D + +F M+ + P
Sbjct: 335 LC-------------VHDYCGDHDGT------------------LALFERMLCSGIRPDI 363
Query: 144 FTITNVLSSCAALRALDIGRKIH 166
T+T VL +C L +L GR+IH
Sbjct: 364 VTLTTVLPTCGRLASLRQGREIH 386
>AT3G58590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:21666262-21668487 FORWARD
Length = 741
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 16 FLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK 75
+ T LKS ++ + +H+ ++++G + Y+ ++L+ YAK+ + DA + D
Sbjct: 417 YTFSTALKSCCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGP 476
Query: 76 STFSWNTILSG-YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
++ I++G Y+R+G+ +++ + + D+VSW I ++ E I++F M
Sbjct: 477 TSVVPLNIVAGIYSRRGQYHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVIELFKHM 536
Query: 135 VKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
++ + P ++T ++LS C+ L L +G IH
Sbjct: 537 LQSNIRPDKYTFVSILSLCSKLCDLTLGSSIH 568
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 8/102 (7%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLG--LNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
LL K+ + + K++HA I L L +Y+ NN+I+LY K G + A VFD+MP
Sbjct: 18 LLNVCRKAPSFARTKALHALSITLCSVLLQPVYVCNNIISLYEKLGEVSLAGKVFDQMPE 77
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDE------IPDRDSVS 110
++ S+NTI+ GY++ G +DKA VF E +P++ +VS
Sbjct: 78 RNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYLPNQSTVS 119
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 34/129 (26%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
LS + IH +IK G I L N LI+ YAK G + D+R FD + K+ WN +LSG
Sbjct: 332 LSCGRQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALLSG 391
Query: 87 YA-RQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
YA + G + + +F+ M++ P+++T
Sbjct: 392 YANKDGPI---------------------------------CLSLFLQMLQMGFRPTEYT 418
Query: 146 ITNVLSSCA 154
+ L SC
Sbjct: 419 FSTALKSCC 427
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
K+L + K +H K GL+ I + N+LI+ Y K G A +F + SWN I+
Sbjct: 229 KDLDISKQLHCSATKKGLDCEISVVNSLISAYGKCGNTHMAERMFQDAGSWDIVSWNAII 288
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
A+ E P + A+K+FV M + SP+Q
Sbjct: 289 CATAKS-----------ENPLK--------------------ALKLFVSMPEHGFSPNQG 317
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T +VL + ++ L GR+IH
Sbjct: 318 TYVSVLGVSSLVQLLSCGRQIH 339
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
++ + N I+S Y + G++ A VFD++P+R+ VS+ T+I GY++ + A +F +
Sbjct: 46 LQPVYVCNNIISLYEKLGEVSLAGKVFDQMPERNKVSFNTIIKGYSKYGDVDKAWGVFSE 105
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M P+Q T++ +L SCA+L + G ++H
Sbjct: 106 MRYFGYLPNQSTVSGLL-SCASLD-VRAGTQLH 136
>AT3G22150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:7813028-7815490 FORWARD
Length = 820
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 32/147 (21%)
Query: 20 TNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS 79
+NL++K + K HA +I+ G+ F + + LI++Y+KSG I ++ +F+
Sbjct: 430 SNLRNKEIG--KQTHAFLIRQGIQFE-GMNSYLIDMYSKSGLIRISQKLFEG-------- 478
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
SGYA +RD +W +MI GY Q E +F M++ +
Sbjct: 479 -----SGYA----------------ERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNI 517
Query: 140 SPSQFTITNVLSSCAALRALDIGRKIH 166
P+ T+ ++L +C+ + ++D+G+++H
Sbjct: 518 RPNAVTVASILPACSQIGSVDLGKQLH 544
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
++ F + ++ Y++ G + A +F + +R+SV++TTMI+GY Q E AI +F+ M
Sbjct: 554 QNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSM 613
Query: 135 VKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
+ + P T VLS+C+ +D G KI
Sbjct: 614 QESGIKPDAITFVAVLSACSYSGLIDEGLKI 644
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 20/131 (15%)
Query: 36 QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDK 95
Q ++LG F +++ N F E+P+ N+++ Y+R G + K
Sbjct: 332 QQVELGRQFHGFVSKN-----------------FRELPIVIV---NSLMVMYSRCGSVHK 371
Query: 96 ALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAA 155
+ VF + +RD VSW TMI + Q + + + +M K T+T +LS+ +
Sbjct: 372 SFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASN 431
Query: 156 LRALDIGRKIH 166
LR +IG++ H
Sbjct: 432 LRNKEIGKQTH 442
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
VK F ++ +S YA G ++ + VFD +R+ W TMI Y Q C +I++F++
Sbjct: 248 VKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLE 307
Query: 134 MVKDK-VSPSQFTITNVLSSCAALRALDIGRKIH 166
+ K + + T S+ +AL+ +++GR+ H
Sbjct: 308 AIGSKEIVSDEVTYLLAASAVSALQQVELGRQFH 341
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLY-----AKSGYIVDA-RN 67
Y+ L+ ++KNL K++H +I+ N S + N+L+N+Y A + D R
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRK 169
Query: 68 VFDEMPVKSTFSWNTILSGYARQGKLDKALHVF 100
VFD M K+ +WNT++S Y + G+ +A F
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQF 202
>AT3G47840.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:17651912-17654032 FORWARD
Length = 706
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 31/152 (20%)
Query: 15 AFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
+ +L+ +S N++ +S+HA +K L S+Y+ ++L+++Y
Sbjct: 112 SVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYK----------------- 154
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
R GK+DK+ VF E+P R++V+WT +I G ++ + F +M
Sbjct: 155 --------------RVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEM 200
Query: 135 VKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + +T L +CA LR + G+ IH
Sbjct: 201 SRSEELSDTYTFAIALKACAGLRQVKYGKAIH 232
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N++ + Y G++ L +F+ + +RD VSWT++IV Y ++ A++ F+ M +V
Sbjct: 248 NSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVP 307
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P++ T ++ S+CA+L L G ++H
Sbjct: 308 PNEQTFASMFSACASLSRLVWGEQLH 333
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +H ++ LGLN S+ ++N+++ +Y+ G +V A +F M + SW+TI+ GY +
Sbjct: 330 EQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQA 389
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G ++ F SW M + P+ F + ++L
Sbjct: 390 GFGEEGFKYF---------SW----------------------MRQSGTKPTDFALASLL 418
Query: 151 SSCAALRALDIGRKIH 166
S + ++ GR++H
Sbjct: 419 SVSGNMAVIEGGRQVH 434
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 31/132 (23%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +HA + GL + + ++LIN+Y+K G I +A +F E S +++GYA
Sbjct: 431 RQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEH 490
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
GK +A+ +F++ ++ VG+ P T +VL
Sbjct: 491 GKSKEAIDLFEK----------SLKVGFR---------------------PDSVTFISVL 519
Query: 151 SSCAALRALDIG 162
++C LD+G
Sbjct: 520 TACTHSGQLDLG 531
>AT5G04780.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: MEF1
(MITOCHONDRIAL RNA EDITING FACTOR 1) (TAIR:AT5G52630.1);
Has 13798 Blast hits to 4918 proteins in 150 species:
Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 36;
Plants - 13447; Viruses - 0; Other Eukaryotes - 252
(source: NCBI BLink). | chr5:1384564-1386447 FORWARD
Length = 627
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 31/137 (22%)
Query: 30 CKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYAR 89
CK +H +K ++ ++Y+ L++LYAK G I DA
Sbjct: 173 CKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDA------------------------ 208
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
+ VF+ + D+ SV+W++M+ GY Q +E A+ ++ + + +QFT+++V
Sbjct: 209 -------VQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 261
Query: 150 LSSCAALRALDIGRKIH 166
+ +C+ L AL G+++H
Sbjct: 262 ICACSNLAALIEGKQMH 278
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 31/138 (22%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+LQ ++ + K+ H ++I++ L + L N LIN Y+K G++ AR VFD M +S
Sbjct: 59 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
SWNT++ Y R N+M A+ +F++M
Sbjct: 119 LVSWNTMIGLYTR-----------------------------NRME--SEALDIFLEMRN 147
Query: 137 DKVSPSQFTITNVLSSCA 154
+ S+FTI++VLS+C
Sbjct: 148 EGFKFSEFTISSVLSACG 165
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 31/134 (23%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K +HA + K G ++++ ++ +++YAK G + ++ +F E+ K+ WNTI+SG+A+
Sbjct: 275 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 334
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
+ + + +F++ M +D + P++ T +++L
Sbjct: 335 ARPKEVMILFEK-------------------------------MQQDGMHPNEVTFSSLL 363
Query: 151 SSCAALRALDIGRK 164
S C ++ GR+
Sbjct: 364 SVCGHTGLVEEGRR 377
>AT5G50390.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:20520789-20522980 REVERSE
Length = 701
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 31/140 (22%)
Query: 15 AFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
+ +++ + K L + K HA +I+ G I L++ Y+K G + AR VFD++P
Sbjct: 329 SIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPR 388
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
K+ SWN ++ GYA G+ +A+K+F M
Sbjct: 389 KNIISWNALMGGYANHGR-------------------------------GTDAVKLFEKM 417
Query: 135 VKDKVSPSQFTITNVLSSCA 154
+ V+P+ T VLS+CA
Sbjct: 418 IAANVAPNHVTFLAVLSACA 437
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+A +L+ + ++ V K +H +KLG+ + +++ LI++Y+K G I DAR F+ MP
Sbjct: 227 FAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMP 286
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K+T +WN +++GY ALH GY+ E A+ + D
Sbjct: 287 EKTTVAWNNVIAGY--------ALH------------------GYS-----EEALCLLYD 315
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M VS QFT++ ++ L L++ ++ H
Sbjct: 316 MRDSGVSIDQFTLSIMIRISTKLAKLELTKQAH 348
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 1 MEIXXXXXXXXDLYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSG 60
+EI Y L++ ++ K++ K ++ M+ G Y+ N ++ ++ K G
Sbjct: 113 LEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCG 172
Query: 61 YIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVF----DEIPDRDSVSWTTMI 115
I+DAR +FDE+P ++ +S+ +I+SG+ G +A +F +E+ D ++ ++ M+
Sbjct: 173 MIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVML 231
>AT4G33170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:15995701-15998673 REVERSE
Length = 990
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ +L T +K +L++ + +H +KLGL+ + ++N+LIN+Y K AR VFD M
Sbjct: 318 FILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMS 377
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ SWN++++G A+ G L V A+ +F+
Sbjct: 378 ERDLISWNSVIAGIAQNG-----LEV--------------------------EAVCLFMQ 406
Query: 134 MVKDKVSPSQFTITNVLSSCAAL-RALDIGRKIHL 167
+++ + P Q+T+T+VL + ++L L + +++H+
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHV 441
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K +HA IK G + +++++ ++++Y K G + A+ FD +PV +W T++SG
Sbjct: 537 KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIEN 596
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G+ ++A HVF ++ ++G V P +FTI +
Sbjct: 597 GEEERAFHVFSQM----------RLMG---------------------VLPDEFTIATLA 625
Query: 151 SSCAALRALDIGRKIH 166
+ + L AL+ GR+IH
Sbjct: 626 KASSCLTALEQGRQIH 641
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
L+ + S +L + K HA+++ N +L NNLI++Y+K G + AR VFD+MP +
Sbjct: 45 FLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRD 104
Query: 77 TFSWNTILSGYARQGK 92
SWN+IL+ YA+ +
Sbjct: 105 LVSWNSILAAYAQSSE 120
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L+ L S + +S H K+GL+ ++ L+N+Y K G + + + +F+EMP +
Sbjct: 151 MLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRD 210
Query: 77 TFSWNTILSGYARQG------KLDKALHVFDEIPDRDSVSWTTMIVG----YNQMACFEN 126
WN +L Y G L A H P+ ++ I G Q+ F N
Sbjct: 211 VVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFAN 270
Query: 127 A----------------------------IKMFVDMVKDKVSPSQFTITNVLSSCAALRA 158
+K F DMV+ V Q T +L++ + +
Sbjct: 271 GNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDS 330
Query: 159 LDIGRKIH 166
L +G+++H
Sbjct: 331 LALGQQVH 338
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 68 VFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMA-C--- 123
F+E P + F N ++S Y++ G L A VFD++PDRD VSW +++ Y Q + C
Sbjct: 67 TFEENPER--FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVE 124
Query: 124 -FENAIKMFVDMVKDKVSPSQFTITNVLSSC 153
+ A +F + +D V S+ T++ +L C
Sbjct: 125 NIQQAFLLFRILRQDVVYTSRMTLSPMLKLC 155
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IHA +KL ++ +L+++YAK G I DA +F + + + +WN +L G A+
Sbjct: 638 RQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQH 697
Query: 91 GKLDKALHVFDEI------PDR 106
G+ + L +F ++ PD+
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDK 719
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
V +F ++ Y+R + +A +F E + D V+W M+ GY Q +K+F
Sbjct: 449 VSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFAL 507
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M K FT+ V +C L A++ G+++H
Sbjct: 508 MHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540
>AT3G20730.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:7247095-7248878 FORWARD
Length = 564
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 55/86 (63%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++ YA+ G+++ A+ F+E+ ++D SWT++I GY + FE AI ++ M +++
Sbjct: 356 NSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIK 415
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P+ T ++LS+C+ ++G KI+
Sbjct: 416 PNDVTFLSLLSACSHTGQTELGWKIY 441
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y +QG + A +FD I RD VSWT MI +++ +A+ +F +M ++ V +QFT
Sbjct: 57 YLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTY 116
Query: 147 TNVLSSCAALRALDIGRKIH 166
+VL SC L L G +IH
Sbjct: 117 GSVLKSCKDLGCLKEGMQIH 136
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
+ +LS YAR GK+++A FD + +RD VSW MI GY AC + + +F M+ +
Sbjct: 152 SALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKK 211
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P FT ++L + ++ L+I ++H
Sbjct: 212 PDCFTFGSLLRASIVVKCLEIVSELH 237
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 32/154 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ LL+ ++ K L + +H IKLG S L +L+N Y K G + +A
Sbjct: 217 FGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANA-------- 268
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQM-ACFENAIKMFV 132
W LH + RD +S T +I G++Q C +A +F
Sbjct: 269 ------WK---------------LH--EGTKKRDLLSCTALITGFSQQNNCTSDAFDIFK 305
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
DM++ K + ++++L C + ++ IGR+IH
Sbjct: 306 DMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIH 339
>AT4G32430.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:15652982-15655273 FORWARD
Length = 763
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 31/157 (19%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y+ L + S+ + + + ++K GL + + N+ I +Y++SG AR VFDEM
Sbjct: 177 YSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMS 236
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K SWN++LSG +++G FE A+ +F D
Sbjct: 237 FKDMISWNSLLSGLSQEGTFG-----------------------------FE-AVVIFRD 266
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH-LCV 169
M+++ V + T+V+++C L + R+IH LC+
Sbjct: 267 MMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCI 303
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 31/132 (23%)
Query: 34 HAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKL 93
HA ++KLGLN +++ L+++YAK G I ++ VF+EM K+ F W +I+S Y+ G
Sbjct: 497 HAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGD- 555
Query: 94 DKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSC 153
FE + +F M+K+ V+P T +VL++C
Sbjct: 556 ------------------------------FETVMNLFHKMIKENVAPDLVTFLSVLTAC 585
Query: 154 AALRALDIGRKI 165
+D G +I
Sbjct: 586 NRKGMVDKGYEI 597
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++S Y++ G L+ VF ++ +R+ VSWTTMI ++A+ +F++M D V
Sbjct: 315 NILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNK-----DDAVSIFLNMRFDGVY 369
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH-LCV 169
P++ T ++++ + G KIH LC+
Sbjct: 370 PNEVTFVGLINAVKCNEQIKEGLKIHGLCI 399
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IH IK G + N+ I LYAK + DA+ F+++ + SWN ++SG+A+ G
Sbjct: 394 IHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGF 453
Query: 93 LDKALHVF 100
+AL +F
Sbjct: 454 SHEALKMF 461
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+ ++ YA+ L+ A F++I R+ +SW MI G+ Q A+KMF+ + +
Sbjct: 411 NSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM- 469
Query: 141 PSQFTITNVLSSCAALRALDI--GRKIH 166
P+++T +VL++ A + + G++ H
Sbjct: 470 PNEYTFGSVLNAIAFAEDISVKQGQRCH 497
>AT3G16610.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5656371-5658335 REVERSE
Length = 654
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK-DKVSPSQFT 145
YA+ G+L+ A+ VFDE+P RD V+W MI G++ C + I +F+DM + D +SP+ T
Sbjct: 148 YAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLST 207
Query: 146 ITNVLSSCAALRALDIGRKIH 166
I + + AL G+ +H
Sbjct: 208 IVGMFPALGRAGALREGKAVH 228
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 32/156 (20%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
++ LL+T ++S+NL + + IH ++K L S + L+NL
Sbjct: 1 MFLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSS--STVLVNL----------------- 41
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR--DSVSWTTMIVGYNQMACFENAIKM 130
T L YA +++ A HVFDEIP + ++W MI Y E A+ +
Sbjct: 42 ---------TRL--YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDL 90
Query: 131 FVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ M+ V P+++T VL +CA LRA+D G+ IH
Sbjct: 91 YYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIH 126
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ Y + GKLD A VFD + RD VSW TM+ G+ + A+ +F M + V+
Sbjct: 448 NALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVN 507
Query: 141 PSQFTITNVLSSCAALRALDIGRKI 165
P + T+ +LS+C+ +D G+++
Sbjct: 508 PDEVTLLAILSACSHSGLVDEGKQL 532
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 22 LKSKNLSVCKSIHAQMIKLGL-NFSIYLTNNLINLYA-KSGYIVDARNVFDEMPVKSTFS 79
L + N+++ + +I +G F ++ YA K+G+I+D + V+
Sbjct: 298 LVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILD-------LTVQ---- 346
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
NTI+S YA+ G L A F EI +D +S+ ++I G E + ++F +M +
Sbjct: 347 -NTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGI 405
Query: 140 SPSQFTITNVLSSCAALRALDIGRKIH 166
P T+ VL++C+ L AL G H
Sbjct: 406 RPDITTLLGVLTACSHLAALGHGSSCH 432
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
++ L K++H ++G + + + ++++YAKS I+ AR VFD K+ +W+
Sbjct: 217 RAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSA 276
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMI-VGYNQMAC 123
++ GY + +A VF ++ D+V+ T + +G M C
Sbjct: 277 MIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGC 318
>AT2G37320.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15667223-15668725 FORWARD
Length = 500
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 41 GLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVF 100
GLN + L K G+I D + ++++ Y G+++ A VF
Sbjct: 131 GLNRDFRTGSGFHCLALKGGFISD------------VYLGSSLVVLYRDSGEVENAYKVF 178
Query: 101 DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALD 160
+E+P+R+ VSWT MI G+ Q + +K++ M K P+ +T T +LS+C AL
Sbjct: 179 EEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALG 238
Query: 161 IGRKIH 166
GR +H
Sbjct: 239 QGRSVH 244
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 30/152 (19%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ LL S L +S+H Q + +GL ++++N+LI++Y K G + DA +FD+
Sbjct: 224 FTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFS 283
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K SWN++++GYA+ G +A+ +F+ +
Sbjct: 284 NKDVVSWNSMIAGYAQHGLAMQAIELFELM------------------------------ 313
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
M K P T VLSSC + GRK
Sbjct: 314 MPKSGTKPDAITYLGVLSSCRHAGLVKEGRKF 345
>AT5G39350.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:15750929-15752962 FORWARD
Length = 677
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y F+ + + K++ + +H ++++ Y+ N L+ +Y G + AR+VFD M
Sbjct: 120 YPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMK 179
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ SWNT++SGY R G ++ AL +FD W
Sbjct: 180 NRDVISWNTMISGYYRNGYMNDALMMFD---------W---------------------- 208
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
MV + V TI ++L C L+ L++GR +H
Sbjct: 209 MVNESVDLDHATIVSMLPVCGHLKDLEMGRNVH 241
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 62 IVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQM 121
+V+ + + D++ VK N +++ Y + G++D+A VFD + RD ++WT MI GY +
Sbjct: 243 LVEEKRLGDKIEVK-----NALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTED 297
Query: 122 ACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
ENA+++ M + V P+ TI +++S C ++ G+ +H
Sbjct: 298 GDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLH 342
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
Y++ G L+ A +F+ I ++ D V W +I GY NA+++F++MV+ V+P+
Sbjct: 465 YSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPN 524
Query: 143 QFTITNVLSSCA 154
+ T T+ L++C+
Sbjct: 525 EITFTSALNACS 536
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 34/155 (21%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LL ++++S K++H +I G S ++ + L YA G+I AR +F+EMP
Sbjct: 18 YQSLLNHFAATQSISKTKALHCHVITGG-RVSGHILSTLSVTYALCGHITYARKLFEEMP 76
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
S S+N ++ Y R+G + +AI +F+
Sbjct: 77 QSSLLSYNIVIRMYVREG-------------------------------LYHDAISVFIR 105
Query: 134 MVKDKVS--PSQFTITNVLSSCAALRALDIGRKIH 166
MV + V P +T V + L+++ +G +H
Sbjct: 106 MVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVH 140
>AT4G01030.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:448336-449838 REVERSE
Length = 500
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 39/151 (25%)
Query: 55 LYAKSGYIVDARNVFDEMPVKSTFSWNTILSG---------------------------- 86
+Y K+GY+ AR VFD M K+ +WN+++SG
Sbjct: 1 MYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAIT 60
Query: 87 -------YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMV 135
YA GK +KAL V ++ ++ + VSWT + G ++ F NA+K+F+ M
Sbjct: 61 WNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQ 120
Query: 136 KDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
++ V P+ T++ +L L L G+++H
Sbjct: 121 EEGVGPNAATMSTLLKILGCLSLLHSGKEVH 151
>AT4G33990.1 | Symbols: EMB2758 | EMB2758 (embryo defective 2758) |
chr4:16290141-16292612 REVERSE
Length = 823
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IH +K G + +Y+ +LI+LY++ + +AR +FDEMPV+ SWN ++SGY + G
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
+AL + + + DSV+ +++ + F + + +K + S+ ++N L
Sbjct: 232 AKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE-SELFVSNKL 288
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 26 NLSVCKSIHAQMIKLGLNFS-IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
++ C+S+ ++ G I + N ++ +YAK G + AR VF+ +P SWNTI+
Sbjct: 363 DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422
Query: 85 SGYARQGKLDKALHVFDEIPDRDSV-----SWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
SGYA+ G +A+ +++ + + + +W +++ +Q +K+ ++K+ +
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 482
Query: 140 SPSQFTITNV 149
F +T++
Sbjct: 483 YLDVFVVTSL 492
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL ++ + + +IH+ IK GL ++++N LI+LYA+ G + D + VFD M V+
Sbjct: 253 LLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRD 312
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEI 103
SWN+I+ Y + +A+ +F E+
Sbjct: 313 LISWNSIIKAYELNEQPLRAISLFQEM 339
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KV 139
N ++ YA+ G +D A VF+ +P+ D +SW T+I GY Q AI+M+ M ++ ++
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEI 447
Query: 140 SPSQFTITNVLSSCAALRALDIGRKIH 166
+ +Q T +VL +C+ AL G K+H
Sbjct: 448 AANQGTWVSVLPACSQAGALRQGMKLH 474
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H +++K GL +++ +L ++Y K G + DA ++F ++P ++ WNT+++ + G
Sbjct: 473 LHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGH 532
Query: 93 LDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPS 142
+KA+ +F E+ D D +++ T++ + + F M D ++PS
Sbjct: 533 GEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPS 587
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y + G+L+ AL +F +IP +SV W T+I + E A+ +F +M+ + V P T
Sbjct: 496 YGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITF 555
Query: 147 TNVLSSCAALRALDIGR 163
+LS+C+ +D G+
Sbjct: 556 VTLLSACSHSGLVDEGQ 572
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
NL K +HA+++ ++ ++ L+NLY G + AR+ FD + + ++WN ++S
Sbjct: 66 NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125
Query: 86 GYARQGKLDKALHVF 100
GY R G + + F
Sbjct: 126 GYGRAGNSSEVIRCF 140
>AT3G50420.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:18710871-18713649 REVERSE
Length = 794
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
++L Y+ G L+ A +FD + +RD+V+W TMIVG + E+ + F +M+ V P
Sbjct: 239 SVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDP 298
Query: 142 SQFTITNVLSSCAALRALDIGRKIH 166
+QFT + VL+ C+ L + +G+ IH
Sbjct: 299 TQFTYSIVLNGCSKLGSYSLGKLIH 323
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 55/92 (59%)
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
+S F T+LS Y + + + A VFD + +RD V WT MIVG++++ E A++ F++M
Sbjct: 435 RSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEM 494
Query: 135 VKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
++K F++++V+ +C+ + L G H
Sbjct: 495 YREKNRSDGFSLSSVIGACSDMAMLRQGEVFH 526
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 27 LSVCKSIHAQMIKLGLNF---SIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
L + IHA ++ G S Y NNLI++Y + G + AR VFD+MP ++ S+N +
Sbjct: 110 LKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKMPHRNVVSYNAL 169
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
S Y+R PD S A + M + V P+
Sbjct: 170 YSAYSRN-------------PDFASY-----------------AFPLTTHMAFEYVKPNS 199
Query: 144 FTITNVLSSCAALRALDIGRKIH 166
T T+++ CA L + +G ++
Sbjct: 200 STFTSLVQVCAVLEDVLMGSSLN 222
>AT5G66500.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:26548076-26549674 REVERSE
Length = 532
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 31/139 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +HA MIK G LI++Y+K G++VD+
Sbjct: 104 RQVHALMIKQGAETGTISKTALIDMYSKYGHLVDS------------------------- 138
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
+ VF+ + ++D VSW ++ G+ + + A+ +F M +++V S+FT+++V+
Sbjct: 139 ------VRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSVV 192
Query: 151 SSCAALRALDIGRKIHLCV 169
+CA+L+ L G+++H V
Sbjct: 193 KTCASLKILQQGKQVHAMV 211
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + K IH ++ G L N L+++Y K G IV AR +F +P KS SW +++
Sbjct: 296 DLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMID 355
Query: 86 GYARQGKLDKALHVFDEIPDRDS 108
YA G KAL +F E+ + S
Sbjct: 356 AYAVNGDGVKALEIFREMCEEGS 378
>AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | EMB175 (EMBRYO
DEFECTIVE 175); catalytic | chr5:1010894-1013584 REVERSE
Length = 896
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL + S L + +H + I++GL + + N LI Y+K + ++++ M +
Sbjct: 291 LLSSCTDSSVLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQD 350
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
++ +++ Y G +D A+ +F + +++++++ ++ G+ + A+K+F DM++
Sbjct: 351 AVTFTEMITAYMSFGMVDSAVEIFANVTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQ 410
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH-LCV 169
V + F++T+ + +C + + +IH C+
Sbjct: 411 RGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCI 444
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 36/158 (22%)
Query: 14 YAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAK-SGYIVD-ARNVF 69
Y F +L ++ S+ IH ++K G S++++N+L++LY K SG D +F
Sbjct: 182 YTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLF 241
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIK 129
DE+P + SWNT++S ++GK KA +F E+ N ++
Sbjct: 242 DEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEM----------------------NRVE 279
Query: 130 MF-VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
F VD FT++ +LSSC L GR++H
Sbjct: 280 GFGVD---------SFTLSTLLSSCTDSSVLLRGRELH 308
>AT4G21300.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:11336479-11339052 FORWARD
Length = 857
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 20 TNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS 79
NL S++ K+IH MIK L +Y + LI++YAK G + A NVF M K+ S
Sbjct: 553 ANLPSESFG--KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVS 610
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDR-----DSVSWTTMIVGYNQMACFENAIKMFVDM 134
WN+I++ GKL +L +F E+ ++ D +++ +I + + ++ F M
Sbjct: 611 WNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSM 670
Query: 135 VKD-KVSPSQ 143
+D + P Q
Sbjct: 671 TEDYGIQPQQ 680
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ LL + K +NL CK IH +++ ++ I+LT+ LI+ Y K + A+N+F +
Sbjct: 343 FSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQC- 401
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
N++ D V +T MI GY + ++++MF
Sbjct: 402 -------NSV-----------------------DVVVFTAMISGYLHNGLYIDSLEMFRW 431
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+VK K+SP++ T+ ++L L AL +GR++H
Sbjct: 432 LVKVKISPNEITLVSILPVIGILLALKLGRELH 464
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
F ++++ Y GK+D +FD + +D V W M+ GY + ++ IK F M D
Sbjct: 174 FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMD 233
Query: 138 KVSPSQFTITNVLSSCAALRALDIGRKIH 166
++SP+ T VLS CA+ +D+G ++H
Sbjct: 234 QISPNAVTFDCVLSVCASKLLIDLGVQLH 262
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N++LS Y++ G+ D A +F + D+V+W MI GY Q E ++ F +M+ V
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL 337
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P T +++L S + L+ ++IH
Sbjct: 338 PDAITFSSLLPSVSKFENLEYCKQIH 363
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 27 LSVCKS---------IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST 77
LSVC S +H ++ G++F + N+L+++Y+K G DA +F M T
Sbjct: 246 LSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADT 305
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVD 133
+WN ++SGY + G ++++L F E+ D++++++++ ++ E ++
Sbjct: 306 VTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCY 365
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
+++ +S F + ++ + R + + + I
Sbjct: 366 IMRHSISLDIFLTSALIDAYFKCRGVSMAQNI 397
>AT2G40720.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:16987269-16989851 FORWARD
Length = 860
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
KS+H ++LG+ +L N LI++Y K G+ A N+F +M KS +WN ++ GY
Sbjct: 597 KSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSH 656
Query: 91 GKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
G AL +FDE+ D V++ ++I N E +F M +D
Sbjct: 657 GDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQD 707
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 44/170 (25%)
Query: 12 DLYAFLLQTNLK------SKNLSVC---------KSIHAQMIKLGLNFSIYLTNNLINLY 56
DL+ F+ Q ++ S +S C KS+HA++ K + + + + L+ LY
Sbjct: 359 DLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLY 418
Query: 57 AKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIV 116
+K G DA VF M K +W +++SG + GK +AL VF ++ D D
Sbjct: 419 SKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDD--------- 469
Query: 117 GYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
D + P +T+V ++CA L AL G ++H
Sbjct: 470 --------------------DSLKPDSDIMTSVTNACAGLEALRFGLQVH 499
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 31/144 (21%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
+S+N + IH ++K+GL+ Y+ +L+++Y+K G + +A
Sbjct: 284 QSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAET--------------- 328
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
VF + D+ W M+ Y + +A+ +F M + V P
Sbjct: 329 ----------------VFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPD 372
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
FT++NV+S C+ L + G+ +H
Sbjct: 373 SFTLSNVISCCSVLGLYNYGKSVH 396
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H MIK GL ++++ ++LI+LY+K G A VF M ++ +WN+++S Y+R
Sbjct: 498 VHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNL 557
Query: 93 LDKALHVFDEIPDR----DSVSWTTMIVGYNQMA 122
+ ++ +F+ + + DSVS T+++V + A
Sbjct: 558 PELSIDLFNLMLSQGIFPDSVSITSVLVAISSTA 591
>AT2G03380.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:1028292-1030361 FORWARD
Length = 689
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+ K L K H ++K G+ S L +L+++Y K G I +AR V
Sbjct: 245 YGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRV----- 299
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
F+E D V WT MIVGY A+ +F
Sbjct: 300 --------------------------FNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQK 333
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M ++ P+ TI +VLS C + L++GR +H
Sbjct: 334 MKGVEIKPNCVTIASVLSGCGLIENLELGRSVH 366
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 33/141 (23%)
Query: 26 NLSVCKSIHAQMIKLGL--NFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
+L+V S+HA +KLG + S+++ L++ YAK G AR +FD + K+T +W+ +
Sbjct: 458 SLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAM 517
Query: 84 LSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
+ GY +QG +L +F+E M+K + P++
Sbjct: 518 IGGYGKQGDTIGSLELFEE-------------------------------MLKKQQKPNE 546
Query: 144 FTITNVLSSCAALRALDIGRK 164
T T++LS+C ++ G+K
Sbjct: 547 STFTSILSACGHTGMVNEGKK 567
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 32/142 (22%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
+NL + +S+H IK+G+ + + N L+++YAK DA+
Sbjct: 357 ENLELGRSVHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAK------------------ 397
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
+VF+ ++D V+W ++I G++Q A+ +F M + V+P+
Sbjct: 398 -------------YVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGV 444
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T+ ++ S+CA+L +L +G +H
Sbjct: 445 TVASLFSACASLGSLAVGSSLH 466
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 81 NTILSG----YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
N +L+G YA+ G++ A VF++I R+ V WT+MI GY + E + +F M +
Sbjct: 176 NVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRE 235
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
+ V +++T ++ +C L AL G+ H C+
Sbjct: 236 NNVLGNEYTYGTLIMACTKLSALHQGKWFHGCL 268
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Query: 13 LYAFLLQTNLK------SKNLSVC---------KSIHAQMIKLGLNFSIYLTNNLINLYA 57
LY L++ + SK L C K IH Q++K+ ++ LT L+++YA
Sbjct: 129 LYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTG-LLDMYA 187
Query: 58 KSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTT 113
K G I A VF+++ +++ W ++++GY + ++ L +F+ + + + ++ T
Sbjct: 188 KCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGT 247
Query: 114 MIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
+I+ +++ +VK + S +T++L
Sbjct: 248 LIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLL 284
>AT1G71420.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:26917822-26920059 REVERSE
Length = 745
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQG 91
SIHAQ+IK G L N+LI+ YAK G + VFD+M + SWN++L Y+ G
Sbjct: 390 SIHAQVIKGGFLADTVLNNSLIHAYAKCGSLDLCMRVFDDMDSRDVVSWNSMLKAYSLHG 449
Query: 92 KLDKALHVFDEIP-DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
++D L VF ++ + DS ++ ++ + E +++F M + + Q
Sbjct: 450 QVDSILPVFQKMDINPDSATFIALLSACSHAGRVEEGLRIFRSMFEKPETLPQL 503
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 38/155 (24%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFS--IYLTNNLINLYAKSGYIVDARNVFDE 71
YA L Q + +NL ++H M+ +S + L N LIN+YAK G I+ AR VFD
Sbjct: 62 YAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFDT 121
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
MP ++ SW +++GY + G + +F + CF
Sbjct: 122 MPERNVVSWTALITGYVQAGNEQEGFCLFSSMLSH----------------CF------- 158
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
P++FT+++VL+SC + G+++H
Sbjct: 159 ---------PNEFTLSSVLTSC----RYEPGKQVH 180
>AT3G05340.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:1524071-1526047 REVERSE
Length = 658
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 31/140 (22%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + K +H+ +IK + + ++ N LIN+Y+K G + D++ VF MP ++ SWN++++
Sbjct: 372 SLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIA 431
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
+AR G AL +++E+ TT+ +V P+ T
Sbjct: 432 AFARHGHGLAALKLYEEM--------TTL-----------------------EVKPTDVT 460
Query: 146 ITNVLSSCAALRALDIGRKI 165
++L +C+ + +D GR++
Sbjct: 461 FLSLLHACSHVGLIDKGREL 480
>AT5G59600.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24011315-24012919 REVERSE
Length = 534
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 43/197 (21%)
Query: 13 LYAFLLQTNLK-SKNL---SVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNV 68
L AF++ + LK S+NL K IH ++K ++ ++LI++Y+K G + +AR V
Sbjct: 115 LDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKV 174
Query: 69 FDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEI------PD----------------- 105
F ++ + +N ++SGYA + D+AL++ ++ PD
Sbjct: 175 FSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNE 234
Query: 106 ----------------RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
D VSWT++I G E A F M+ + P+ TI +
Sbjct: 235 EKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITL 294
Query: 150 LSSCAALRALDIGRKIH 166
L +C L + G++IH
Sbjct: 295 LPACTTLAYMKHGKEIH 311
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH + GL ++ + L+++Y K G+I +A +F + P K+T ++N+++ YA
Sbjct: 308 KEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANH 367
Query: 91 GKLDKALHVFDEI 103
G DKA+ +FD++
Sbjct: 368 GLADKAVELFDQM 380
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L++ N + + + +HA ++ G+ + L+ Y + G ++DAR VFDEMP
Sbjct: 19 YVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEMP 78
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIV 116
+ ++ AR G ++L F E+ +D + IV
Sbjct: 79 KRDISGCVVMIGACARNGYYQESLDFFREMY-KDGLKLDAFIV 120
>AT1G64580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23985078-23988740 REVERSE
Length = 1052
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+ L+ T +K NL ++++ +MI+ + +++ N+LIN + G + DA+ +FD M
Sbjct: 785 FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM 844
Query: 73 PVKSTF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACF 124
K F ++NT+++G+ + +++ + +F E+ + D+ ++ T+I GY Q
Sbjct: 845 VSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKL 904
Query: 125 ENAIKMFVDMVKDKVSPSQFTITNVLSSC 153
A K+F MV VSP T N+L C
Sbjct: 905 NVAQKVFNRMVDCGVSPDIVTY-NILLDC 932
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ L+ +K NL + ++ +MI+ ++ + N++IN G + DA+ FD M
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308
Query: 74 VKSTF----SWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFE 125
K F ++NT++SG+ + +D+ + +F + + D ++ T+I GY Q+
Sbjct: 309 SKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLR 368
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
A+ +F MV +V+P ++++ C L L + +I
Sbjct: 369 VALDIFCWMVSRRVTP------DIITHCILLHGLCVNGEIE 403
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 37 MIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST----FSWNTILSGYARQGK 92
M+K ++ ++ LI+ + K G +++ARN++ EM +S F++N++++G+ G
Sbjct: 774 MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 833
Query: 93 LDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITN 148
L A ++FD + + D V++ T+I G+ + E+ +K+F +M + FT
Sbjct: 834 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 893
Query: 149 VLSSCAALRALDIGRKI 165
++ L++ +K+
Sbjct: 894 LIHGYCQAGKLNVAQKV 910
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
DLY+F L+ + LS S+ +M+KLG SI +L++ + I DA ++
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 70 DEMPVKSTFS-----WNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQ 120
M VKS + +NT++ G + G+L+ AL + +E+ + D V++ T++ G
Sbjct: 165 ILM-VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223
Query: 121 MACFENAIKMFVDMVKDKVSPSQFTITNVL 150
+ +A +M DM+K ++P T T ++
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALI 253
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
DLY+F L+ + LS+ ++ +M+KLG SI +L+N + + +A ++
Sbjct: 642 DLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLV 701
Query: 70 DEMP----VKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQM 121
D M V + +NT+++G + L+ AL VF + + D+V++ T+I G +
Sbjct: 702 DSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNS 761
Query: 122 ACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+ +A ++ DMVK K+ P+ T ++ +
Sbjct: 762 GRWTDAARLLRDMVKRKIDPNVIFFTALIDT 792
>AT5G59900.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24123983-24126706 REVERSE
Length = 907
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y+ L+ + L S +M+ GL S+Y N+LIN + K G I A EM
Sbjct: 405 YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMI 464
Query: 74 VK----STFSWNTILSGYARQGKLDKALHVFDEIPDRDSV----SWTTMIVGYNQMACFE 125
K + ++ +++ GY +GK++KAL ++ E+ + ++TT++ G +
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIR 524
Query: 126 NAIKMFVDMVKDKVSPSQFT 145
+A+K+F +M + V P++ T
Sbjct: 525 DAVKLFNEMAEWNVKPNRVT 544
>AT5G27110.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:9538572-9540647 REVERSE
Length = 691
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 47 YLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR 106
+L + L KSGY+ D ++++ YA+ + +L VFDE+P+R
Sbjct: 124 FLGRMIHTLVVKSGYVCD------------VVVASSLVGMYAKFNLFENSLQVFDEMPER 171
Query: 107 DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
D SW T+I + Q E A+++F M P+ ++T +S+C+ L L+ G++IH
Sbjct: 172 DVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIH 231
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 31/147 (21%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
+S+NL K IH +I+ +N IY+ +LI+LY K G A VF + SWN
Sbjct: 321 RSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNV 380
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
++S Y G KA+ V+D+ MV V P
Sbjct: 381 MISSYISVGNWFKAVEVYDQ-------------------------------MVSVGVKPD 409
Query: 143 QFTITNVLSSCAALRALDIGRKIHLCV 169
T T+VL +C+ L AL+ G++IHL +
Sbjct: 410 VVTFTSVLPACSQLAALEKGKQIHLSI 436
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH + +K G Y+ + L+++Y K + AR VF +MP KS +WN+++ GY +
Sbjct: 228 KEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAK 287
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G + +C E +M ++ + PSQ T+T++L
Sbjct: 288 G---------------------------DSKSCVEILNRMIIEGTR----PSQTTLTSIL 316
Query: 151 SSCAALRALDIGRKIH 166
+C+ R L G+ IH
Sbjct: 317 MACSRSRNLLHGKFIH 332
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IH ++K G + + ++L+ +YAK ++ VFDEMP + SWNT++S + +
Sbjct: 127 RMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQS 186
Query: 91 GKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
G+ +KAL +F + + +SVS T I +++ E ++ VK ++
Sbjct: 187 GEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVN 246
Query: 147 TNVLSSCAALRALDIGRKI 165
+ ++ L++ R++
Sbjct: 247 SALVDMYGKCDCLEVAREV 265
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
+ +L Y++ G +A +F+ IP +D VSWT MI Y A+ F +M K +
Sbjct: 449 SALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLK 508
Query: 141 PSQFTITNVLSSCAALRALDIGRK 164
P T+ VLS+C +D G K
Sbjct: 509 PDGVTLLAVLSACGHAGLIDEGLK 532
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 42/193 (21%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
L + L + +K+L K +H +++ LGL + L +LIN+Y AR+VF+
Sbjct: 6 LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENF 65
Query: 73 PVKS-TFSWNTILSGYARQGKLDKALHVFDE-------IPDR------------------ 106
++S + WN+++SGY++ L VF +PD
Sbjct: 66 DIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFL 125
Query: 107 ---------------DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
D V ++++ Y + FEN++++F +M + V+ I+
Sbjct: 126 GRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQ 185
Query: 152 SCAALRALDI-GR 163
S A +AL++ GR
Sbjct: 186 SGEAEKALELFGR 198
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH + + L L + L+++Y+K G +A +F+ +P K SW ++S Y
Sbjct: 430 KQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSH 489
Query: 91 GKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
G+ +AL+ FDE+ D V+ ++ + +K F M
Sbjct: 490 GQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQM 537
>AT3G01580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:223529-225454 REVERSE
Length = 641
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 33/147 (22%)
Query: 20 TNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS 79
T L + L C +H +I+ G + + L N+L+N YAKS F E
Sbjct: 155 TKLSNSRLGRC--VHGFVIRRGFSNDLSLVNSLLNCYAKS-------RAFKE-------- 197
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
A+++F I ++D +SW+T+I Y Q A+ +F DM+ D
Sbjct: 198 ----------------AVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGT 241
Query: 140 SPSQFTITNVLSSCAALRALDIGRKIH 166
P+ T+ VL +CAA L+ GRK H
Sbjct: 242 EPNVATVLCVLQACAAAHDLEQGRKTH 268
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L K H+ +IK G + + ++ +L+ LY++ G + +A VF+ + +K T W ++++G
Sbjct: 363 LEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITG 422
Query: 87 YARQGKLDKALHVFDEIPDR-----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVS 140
Y GK KAL F+ + + V++ +++ + +++F MV D +++
Sbjct: 423 YGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLA 482
Query: 141 PS 142
P+
Sbjct: 483 PN 484
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV-KDKVSPSQFT 145
Y + G++ +AL +FDE+ D V+W++M+ G+ + A++ F MV V+P + T
Sbjct: 87 YIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVT 146
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+ ++S+C L +GR +H
Sbjct: 147 LITLVSACTKLSNSRLGRCVH 167
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 69 FDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI 128
FD P F +++ Y+R G L A VF+ I +D+V WT++I GY A+
Sbjct: 378 FDSNP----FIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKAL 433
Query: 129 KMFVDMVKD-KVSPSQFTITNVLSSCAALRALDIGRKI 165
+ F MVK +V P++ T ++LS+C+ + G +I
Sbjct: 434 ETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRI 471
>AT4G38010.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:17859582-17861261 REVERSE
Length = 559
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 68/204 (33%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IH + K+G IY+ N+L++ Y G +A VF EMPV+ SW I++G+ R
Sbjct: 126 KQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRT 185
Query: 91 GKLDKALHVFDEIP-DRDSVSWTTMIVGYNQMAC-------------------------- 123
G +AL F ++ + + ++ ++V ++ C
Sbjct: 186 GLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNAL 245
Query: 124 ---------FENAIKMFVDMV-KDKVS-------------------------------PS 142
+A+++F ++ KDKVS P
Sbjct: 246 IDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPD 305
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
+T+VLS+CA+L A+D GR +H
Sbjct: 306 GHILTSVLSACASLGAVDHGRWVH 329
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H ++ G+ + ++ ++++YAK GYI A +F+ + K+ F+WN +L G A G
Sbjct: 328 VHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGH 387
Query: 93 LDKALHVFDEI 103
++L F+E+
Sbjct: 388 GLESLRYFEEM 398
>AT3G46790.1 | Symbols: CRR2 | CRR2 (CHLORORESPIRATORY REDUCTION 2)
| chr3:17231975-17233948 REVERSE
Length = 657
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 37/159 (23%)
Query: 14 YAFLLQTNLKSK----NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
Y ++L+ + S+ +L K IHA + + G + +Y+ L+++YA+ G +
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCV------- 233
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIK 129
D A +VF +P R+ VSW+ MI Y + A++
Sbjct: 234 ------------------------DYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALR 269
Query: 130 MFVDMVKDK--VSPSQFTITNVLSSCAALRALDIGRKIH 166
F +M+++ SP+ T+ +VL +CA+L AL+ G+ IH
Sbjct: 270 TFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIH 308
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 60 GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
GYI+ R + +PV S +++ Y R GKL+ VFD + DRD VSW ++I Y
Sbjct: 309 GYILR-RGLDSILPVISA-----LVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362
Query: 120 QMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
+ AI++F +M+ + SP+ T +VL +C+ ++ G+++
Sbjct: 363 VHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRL 408
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+LQ L K IH +++ GL+ + + + L+ +Y + G + + VFD M +
Sbjct: 291 VLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRD 350
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFV 132
SWN+++S Y G KA+ +F+E+ V++ +++ + E ++F
Sbjct: 351 VVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFE 410
Query: 133 DMVKD 137
M +D
Sbjct: 411 TMWRD 415
>AT2G35130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14807589-14810164 REVERSE
Length = 591
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 80/150 (53%), Gaps = 8/150 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM- 72
+ LL K+++++ C++I +M + G+ ++ N+++NLY + G + EM
Sbjct: 407 HMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEME 466
Query: 73 --PVKSTFS-WNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
P + S +N +++ Y + G L++ +F E+ ++ D V+WT+ I Y++ +
Sbjct: 467 NGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYV 526
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAA 155
+++F +M+ +P T +LS+C++
Sbjct: 527 KCLEVFEEMIDSGCAPDGGTAKVLLSACSS 556
>AT1G63400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23507320-23509053 FORWARD
Length = 577
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
L+ +K L + ++ +MIK ++ I+ ++LIN + + +A+++F+ M K
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395
Query: 77 TF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAI 128
F ++NT+++G+ + ++D+ + +F E+ R ++V++TT+I G+ Q +NA
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 455
Query: 129 KMFVDMVKDKVSPSQFTITNVLSS 152
+F MV D V P+ T +L
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDG 479
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQ 90
+ MI+ +N ++ N LI+ + K G +V+A ++DEM +S F+++++++G+
Sbjct: 319 SDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 378
Query: 91 GKLDKALHVFDEIPDRDS----VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
+LD+A H+F+ + +D V++ T+I G+ + + +++F +M + + + T
Sbjct: 379 DRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTY 438
Query: 147 TNVLSSCAALRALD 160
T ++ R D
Sbjct: 439 TTLIHGFFQARDCD 452
>AT5G39680.1 | Symbols: EMB2744 | EMB2744 (EMBRYO DEFECTIVE 2744) |
chr5:15884236-15886368 REVERSE
Length = 710
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H ++K G + + N L+N+YAKSG I DAR F M + +WNT++SG + G
Sbjct: 360 LHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGL 419
Query: 93 LDKALHVFD------EIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
+AL FD EIP+R +++ ++ + + E + F ++K
Sbjct: 420 GREALEAFDRMIFTGEIPNR--ITFIGVLQACSHIGFVEQGLHYFNQLMK 467
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 33/154 (21%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
L + L +NL+ NL++ +H++M++ G N + LIN+Y K G ++ A+ VFD+
Sbjct: 241 LSSLRLFSNLRDLNLAL--QVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDT 298
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
++ F TI+ Y + DK+ FE A+ +F
Sbjct: 299 HAQNIFLNTTIMDAYFQ----DKS---------------------------FEEALNLFS 327
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M +V P+++T +L+S A L L G +H
Sbjct: 328 KMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLH 361
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 35/156 (22%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMI---KLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
LL+ S L + +SIHA +I + Y N+LINLY K V AR +FD M
Sbjct: 37 LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLM- 95
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
P+R+ VSW M+ GY +K+F
Sbjct: 96 ------------------------------PERNVVSWCAMMKGYQNSGFDFEVLKLFKS 125
Query: 134 M-VKDKVSPSQFTITNVLSSCAALRALDIGRKIHLC 168
M + P++F T V SC+ ++ G++ H C
Sbjct: 126 MFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGC 161
>AT5G61990.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24900186-24903110 REVERSE
Length = 974
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+ K N+ SI +M++ GL ++ + N L+ + +SG I A+ + DEM
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMS 689
Query: 74 VKS----TFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
VK ++ TI+ GY + G L +A +FDE+ + DS +TT++ G ++ E
Sbjct: 690 VKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVE 749
Query: 126 NAIKMF 131
AI +F
Sbjct: 750 RAITIF 755
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+ K+ + + I +M G+ ++ LIN ++K G + A ++FDEM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Query: 74 ----VKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
+ +N +L G+ R G+++KA + DE+ + ++V++ T+I GY +
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHL 167
A ++F +M + P F T ++ C L D+ R I +
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLN--DVERAITI 754
>AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE
Length = 590
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 11/121 (9%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS------TFSWNTILSGYA 88
+ M++ +N + N LI+ + K G +V+A ++DEM VKS ++NT++ G+
Sbjct: 309 SDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM-VKSKHCFPDVVAYNTLIKGFC 367
Query: 89 RQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
+ ++++ + VF E+ R ++V++TT+I G+ Q +NA +F MV D V P
Sbjct: 368 KYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIM 427
Query: 145 T 145
T
Sbjct: 428 T 428
>AT1G03510.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:876258-877547 REVERSE
Length = 429
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQG 91
S+HA +K + ++ L+++Y K + AR +FDE+P ++ WN ++S Y G
Sbjct: 69 SVHAHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCG 128
Query: 92 KLDKALHVF---DEIPDRDSV-SWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTIT 147
K+ +A+ ++ D +P+ S + +VG + AI+ + M++ + P+ T+
Sbjct: 129 KVKEAVELYEAMDVMPNESSFNAIIKGLVGTEDGS--YRAIEFYRKMIEFRFKPNLITLL 186
Query: 148 NVLSSCAALRALDIGRKIH 166
++S+C+A+ A + ++IH
Sbjct: 187 ALVSACSAIGAFRLIKEIH 205
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 66 RNVFDEMP-VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACF 124
RN+ + P +KS ++ Y R G + VFD + DRD V+W+++I Y
Sbjct: 210 RNLIEPHPQLKSG-----LVEAYGRCGSIVYVQLVFDSMEDRDVVAWSSLISAYALHGDA 264
Query: 125 ENAIKMFVDMVKDKVSPSQFTITNVLSSCA 154
E+A+K F +M KV+P NVL +C+
Sbjct: 265 ESALKTFQEMELAKVTPDDIAFLNVLKACS 294
>AT4G19191.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 10 growth stages; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is: CRR22
(CHLORORESPIRATORY REDUCTION22); endonuclease
(TAIR:AT1G11290.1); Has 16668 Blast hits to 5144
proteins in 160 species: Archae - 1; Bacteria - 6;
Metazoa - 71; Fungi - 62; Plants - 16190; Viruses - 0;
Other Eukaryotes - 338 (source: NCBI BLink). |
chr4:10496228-10498192 FORWARD
Length = 654
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F+ + + ++ C+ +HA +IK +++ ++++ K + A VF+ MP
Sbjct: 55 FPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMP 114
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIK 129
+ +WN +LSG+ + G DKA +F E+ DSV+ T+I Q A FE ++K
Sbjct: 115 ERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLI----QSASFEKSLK 170
Query: 130 MFVDM 134
+ M
Sbjct: 171 LLEAM 175
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 58 KSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVG 117
++G +DAR + N ++ Y++ G + +A +FD P++ V+WTTMI G
Sbjct: 374 ETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAG 433
Query: 118 YNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
Y F A+K+F M+ P+ T VL +CA +L+ G
Sbjct: 434 YALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKG 478
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 31/141 (21%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
+ L+ + IH+ I LG + I N I++Y+KS AR +FD M ++ SW ++
Sbjct: 270 ETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMI 329
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
SGYA +G +D+AL +F M+K P
Sbjct: 330 SGYAEKGDMDEALALFHA-------------------------------MIKSGEKPDLV 358
Query: 145 TITNVLSSCAALRALDIGRKI 165
T+ +++S C +L+ G+ I
Sbjct: 359 TLLSLISGCGKFGSLETGKWI 379
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 74 VKSTFSWNTILSG------YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENA 127
+KS F W+ + G + + +D A VF+ +P+RD+ +W M+ G+ Q + A
Sbjct: 79 IKSPF-WSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKA 137
Query: 128 IKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+F +M ++++P T+ ++ S + ++L + +H
Sbjct: 138 FSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMH 176
>AT3G25060.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:9128516-9130321 FORWARD
Length = 601
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 31/150 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LLQ + + + +S+H + + GL ++ + +L+++YAK G+I A VF M K+
Sbjct: 223 LLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKT 282
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
SW +++SG+A+ G +KA F+ + + S+ +
Sbjct: 283 AVSWGSLISGFAQNGLANKA---FEAVVEMQSLGF------------------------- 314
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
P T+ VL +C+ + +L GR +H
Sbjct: 315 ---QPDLVTLVGVLVACSQVGSLKTGRLVH 341
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
F +++L+ Y + GK+D+A +F ++ RD + WTTM+ G+ Q A++ + +M +
Sbjct: 152 FVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNE 211
Query: 138 KVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + +L + L +GR +H
Sbjct: 212 GFGRDRVVMLGLLQASGDLGDTKMGRSVH 240
>AT3G26782.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN:
seed; EXPRESSED DURING: E expanded cotyledon stage;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT3G23330.1); Has 13812 Blast hits to 4961
proteins in 140 species: Archae - 0; Bacteria - 2;
Metazoa - 58; Fungi - 30; Plants - 13522; Viruses - 0;
Other Eukaryotes - 200 (source: NCBI BLink). |
chr3:9850594-9852682 FORWARD
Length = 659
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 24 SKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTI 83
S L + K IH Q+I++GL + + ++I++Y K G + AR FD M K+ SW +
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAM 359
Query: 84 LSGYARQGKLDKALHVFDEIPD 105
++GY G KAL +F + D
Sbjct: 360 IAGYGMHGHAAKALELFPAMID 381
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP----- 141
Y+ GKL+ A VFDEIP R+ VSWT+MI GY+ +A+ +F D++ D+
Sbjct: 121 YSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF 180
Query: 142 -SQFTITNVLSSCAALRALDIGRKIH 166
+ +V+S+C+ + A + IH
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIH 206
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K H Q G I++++ LI +Y+ G + DAR VFDE+P ++ SW +++ GY
Sbjct: 96 KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155
Query: 91 GKLDKALHVF-----DEIPDRDSVSWTTM 114
G A+ +F DE D D++ +M
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSM 184
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 20 TNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGY--IVDARNVFDEMPVKST 77
+ + +K L+ +SIH+ +IK G + + + N L++ YAK G + AR +FD++ K
Sbjct: 194 SRVPAKGLT--ESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR 251
Query: 78 FSWNTILSGYARQGKLDKALHVFDEI 103
S+N+I+S YA+ G ++A VF +
Sbjct: 252 VSYNSIMSVYAQSGMSNEAFEVFRRL 277
>AT3G47530.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:17517382-17519157 REVERSE
Length = 591
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
NT++S Y+R G +DKA VF + +R+ VSWT +I G + AI+ F +M+K +S
Sbjct: 256 NTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGIS 315
Query: 141 PSQFTITNVLSSCA 154
P + T+T +LS+C+
Sbjct: 316 PEEQTLTGLLSACS 329
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 15 AFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
+F L+ +KS +L IH ++ G L L++LY+ DA VFDE+P
Sbjct: 117 SFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPK 176
Query: 75 KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM 134
+ T SWN + S Y R + L +FD++ +
Sbjct: 177 RDTVSWNVLFSCYLRNKRTRDVLVLFDKMKND---------------------------- 208
Query: 135 VKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
V V P T L +CA L ALD G+++H
Sbjct: 209 VDGCVKPDGVTCLLALQACANLGALDFGKQVH 240
>AT1G71460.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:26928247-26930316 REVERSE
Length = 689
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 34/144 (23%)
Query: 25 KNLSVCKSIHAQMIKLGLNF--SIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
K L + K +HA ++K N+ ++ + LI+LY K G + R VF ++ SW
Sbjct: 330 KALKLGKEVHAHVLK-SKNYVEQPFVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISWTA 388
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
++SGYA G+ D+AL S+ W M ++ P
Sbjct: 389 LMSGYAANGRFDQALR---------SIVW----------------------MQQEGFRPD 417
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
TI VL CA LRA+ G++IH
Sbjct: 418 VVTIATVLPVCAELRAIKQGKEIH 441
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYA-----KSGYIVDARNVFDEMPVKSTFSWNTILSG 86
S +M +LG++ ++Y +N+ +A + G A + + + S F +++
Sbjct: 200 STFTEMRELGVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGL-FNSVFLKTSLVDM 258
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV-KDKVSPSQFT 145
Y + GK+ A VFDEI +RD V W MI G A+ +F M+ ++K+ P+
Sbjct: 259 YFKCGKVGLARRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPNSVI 318
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+T +L ++AL +G+++H
Sbjct: 319 LTTILPVLGDVKALKLGKEVH 339
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ LL+ ++ K+L K +H + GL + +L L+++Y G + DA+ VFDE
Sbjct: 114 FSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFDEST 173
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ +SWN +L G T+I G + +++ + F +
Sbjct: 174 SSNVYSWNALLRG--------------------------TVISGKKR---YQDVLSTFTE 204
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M + V + ++++NV S A AL G K H
Sbjct: 205 MRELGVDLNVYSLSNVFKSFAGASALRQGLKTH 237
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 60 GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYN 119
G+I+ + F+ +P F I+ Y + G L A FD + + S++WT +I Y
Sbjct: 543 GHIL--KKEFESIP----FVSARIIKMYGKCGDLRSANFSFDAVAVKGSLTWTAIIEAYG 596
Query: 120 QMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCA 154
F +AI F MV +P+ FT T VLS C+
Sbjct: 597 CNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICS 631
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y++ G + + +FD + R+ +WT MI Y + I++F M+ K P T+
Sbjct: 463 YSKCGVPEYPIRLFDRLEQRNVKAWTAMIDCYVENCDLRAGIEVFRLMLLSKHRPDSVTM 522
Query: 147 TNVLSSCAALRALDIGRKIH 166
VL+ C+ L+AL +G+++H
Sbjct: 523 GRVLTVCSDLKALKLGKELH 542
>AT1G63230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23451144-23452201 FORWARD
Length = 323
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ +K +S + I+ M++ G+ + N++I+ + K + DA+ + D M
Sbjct: 149 FSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMA 208
Query: 74 VKS----TFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
KS +++T+++GY + ++D + +F E+ R ++V++TT+I G+ Q+ +
Sbjct: 209 SKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLD 268
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRAL 159
A + M+ V+P+ T ++L+S + + L
Sbjct: 269 AAQDLLNVMISSGVAPNYITFQSMLASLCSKKEL 302
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y+ ++ + +S + + + MI+ +N + + LIN K G + +A ++ +M
Sbjct: 114 YSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDML 173
Query: 74 VK----STFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
+ +T ++N+++ G+ +Q +L+ A + D + + D V+++T+I GY + +
Sbjct: 174 RRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVD 233
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
N +++F +M + + + T T ++ + LD + +
Sbjct: 234 NGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDL 273
>AT4G04370.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:2134060-2136249 REVERSE
Length = 729
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 31/141 (21%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + + +H Q++K G + ++L LI +Y K G
Sbjct: 260 DLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCG------------------------- 294
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
K + + V + IP++D V WT MI G ++ E A+ +F +M++ S
Sbjct: 295 ------KEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEA 348
Query: 146 ITNVLSSCAALRALDIGRKIH 166
I +V++SCA L + D+G +H
Sbjct: 349 IASVVASCAQLGSFDLGASVH 369
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
T + N++++ YA+ G LDK+L +F+ + +RD VSW +I GY Q A+ +F +M
Sbjct: 381 TPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKF 440
Query: 137 DKVSP-SQFTITNVLSSCAALRALDIGRKIHLCV 169
V FT+ ++L +C++ AL +G+ IH V
Sbjct: 441 KTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIV 474
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D + F LL+ + LS SIH Q++ G + Y++++L+NLYAK G + AR VF
Sbjct: 45 DTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVF 104
Query: 70 DEMPVKSTFSWNTILSGYARQGKLDKALHVFDEI 103
+EM + W ++ Y+R G + +A + +E+
Sbjct: 105 EEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEM 138
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ +H + G + I + N+++NLY K ++ DA+++FD+M + SWNT++SGYA
Sbjct: 164 QCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASV 223
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G + + L K+ M D + P Q T L
Sbjct: 224 GNMSEIL-------------------------------KLLYRMRGDGLRPDQQTFGASL 252
Query: 151 SSCAALRALDIGRKIH 166
S + L++GR +H
Sbjct: 253 SVSGTMCDLEMGRMLH 268
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LLQ + L V K IH +I+ + + L+++Y+K GY+ A+ FD + K
Sbjct: 454 LLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKD 513
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFV 132
SW +++GY GK D AL ++ E + + V + ++ + + +K+F
Sbjct: 514 VVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFS 573
Query: 133 DMVKD-KVSPSQFTITNVLS-SCAALRALD 160
MV+D V P+ + V+ C A R D
Sbjct: 574 SMVRDFGVEPNHEHLACVVDLLCRAKRIED 603
>AT5G65570.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:26203968-26206184 FORWARD
Length = 738
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
+ V + F + ++ Y + GK +A V D + ++D V T +IVGY+Q A+K F
Sbjct: 196 LEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAF 255
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M+ +KV P+++T +VL SC L+ + G+ IH
Sbjct: 256 QSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIH 290
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 74 VKSTF-----SWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAI 128
VKS F S ++L+ Y R +D +L VF I + VSWT++I G Q E A+
Sbjct: 294 VKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMAL 353
Query: 129 KMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
F M++D + P+ FT+++ L C+ L + GR+IH
Sbjct: 354 IEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIH 391
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IH + K G + Y + LI+LY K G AR VFD + S NT++ YA+
Sbjct: 388 RQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQN 447
Query: 91 GKLDKALHVFDEIPD----RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
G +AL +F+ + + + V+ ++++ N E ++F KDK+
Sbjct: 448 GFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKDKI 500
>AT3G56550.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:20952896-20954641 REVERSE
Length = 581
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ F L++ + K++ C IH +I+ SG++ DA
Sbjct: 110 FNFALKSCERIKSIPKCLEIHGSVIR-------------------SGFLDDA-------- 142
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
+ +T +++ Y+ G ++ A VFDE+P RD VSW MI ++ + A+ M+
Sbjct: 143 IVAT----SLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKR 198
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M + V +T+ +LSSCA + AL++G +H
Sbjct: 199 MGNEGVCGDSYTLVALLSSCAHVSALNMGVMLH 231
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
F N ++ YA+ G L+ A+ VF+ + RD ++W +MI+GY AI F MV
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVAS 303
Query: 138 KVSPSQFTITNVLSSCA 154
V P+ T +L C+
Sbjct: 304 GVRPNAITFLGLLLGCS 320
>AT2G03880.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:1181560-1183452 FORWARD
Length = 630
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 32/147 (21%)
Query: 22 LKSKN-LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSW 80
L+S N +S + +H +IK GL +++ + LI+++AK G DA +VFDEM W
Sbjct: 169 LRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVW 228
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+I+ G+A+ + D AL +F M +
Sbjct: 229 NSIIGGFAQNSRSDVALELFKR-------------------------------MKRAGFI 257
Query: 141 PSQFTITNVLSSCAALRALDIGRKIHL 167
Q T+T+VL +C L L++G + H+
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHV 284
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 78 FSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
F N +++ Y + L+ A +FD++P R+ +SWTTMI Y++ + A+++ V M++D
Sbjct: 97 FLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD 156
Query: 138 KVSPSQFTITNVLSSCAAL 156
V P+ +T ++VL SC +
Sbjct: 157 NVRPNVYTYSSVLRSCNGM 175
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ Y + G L+ AL VF+++ +RD ++W+TMI G Q + A+K+F M
Sbjct: 297 NALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTK 356
Query: 141 PSQFTITNVLSSCAALRALDIG 162
P+ TI VL +C+ L+ G
Sbjct: 357 PNYITIVGVLFACSHAGLLEDG 378
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 34 HAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKL 93
H ++K + + L N L+++Y K G + DA VF++M + +W+T++SG A+ G
Sbjct: 283 HVHIVKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYS 340
Query: 94 DKALHVFDEIPDRDSVSWTTMIVG 117
+AL +F+ + + IVG
Sbjct: 341 QEALKLFERMKSSGTKPNYITIVG 364
>AT1G22830.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:8076921-8079032 FORWARD
Length = 703
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
WN+++ YA+ G++ A VFD + RD V++T++I GY ++ E A+ F DM + +
Sbjct: 462 WNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGI 521
Query: 140 SPSQFTITNVLSSCA 154
P T+ VLS+C+
Sbjct: 522 KPDHVTMVAVLSACS 536
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEI-- 103
+Y+ N LI++Y + G + AR +FD M + SWN I++ Y + KL +A + D +
Sbjct: 219 LYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYL 278
Query: 104 --PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDI 161
+ V+W T+ G + + A+ V M V + N L +C+ + AL
Sbjct: 279 SGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKW 338
Query: 162 GRKIHLCV 169
G+ H V
Sbjct: 339 GKVFHCLV 346
>AT1G22830.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:8076921-8079032 FORWARD
Length = 703
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 80 WNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKV 139
WN+++ YA+ G++ A VFD + RD V++T++I GY ++ E A+ F DM + +
Sbjct: 462 WNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGI 521
Query: 140 SPSQFTITNVLSSCA 154
P T+ VLS+C+
Sbjct: 522 KPDHVTMVAVLSACS 536
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 46 IYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEI-- 103
+Y+ N LI++Y + G + AR +FD M + SWN I++ Y + KL +A + D +
Sbjct: 219 LYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYL 278
Query: 104 --PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDI 161
+ V+W T+ G + + A+ V M V + N L +C+ + AL
Sbjct: 279 SGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKW 338
Query: 162 GRKIHLCV 169
G+ H V
Sbjct: 339 GKVFHCLV 346
>AT4G31070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:15118696-15120537 REVERSE
Length = 613
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
LS ++H+Q++K G I L N LI++YAK G + AR VF E+ K SW+++++
Sbjct: 369 LSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINA 428
Query: 87 YARQGKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
Y G +AL +F + + D +++ ++ N E A +F K
Sbjct: 429 YGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQAGK 482
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 96 ALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAA 155
A HVFD++ ++ VSWT MI G +E + +F M ++ + P++ T+ +VL +C
Sbjct: 204 AFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVE 263
Query: 156 L 156
L
Sbjct: 264 L 264
>AT3G15130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5097153-5099222 REVERSE
Length = 689
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 33/155 (21%)
Query: 16 FLLQTNLKS----KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
F TNLK+ L IH +K+G + + N+L+++Y+K G I +A VF
Sbjct: 108 FTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRR 167
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
+ +S SWN +++G+ G KAL F + + +
Sbjct: 168 IVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN------------------------ 203
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+K++ P +FT+T++L +C++ + G++IH
Sbjct: 204 ---IKER--PDEFTLTSLLKACSSTGMIYAGKQIH 233
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 31/134 (23%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H ++K G ++ +N LI++Y K + A VFD MP ++ SW+ ++SG+ G
Sbjct: 28 VHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGD 87
Query: 93 LDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
L +L +F E M + + P++FT + L +
Sbjct: 88 LKGSLSLFSE-------------------------------MGRQGIYPNEFTFSTNLKA 116
Query: 153 CAALRALDIGRKIH 166
C L AL+ G +IH
Sbjct: 117 CGLLNALEKGLQIH 130
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 31 KSIHAQMIKLGLNF--SIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYA 88
K IH +++ G + S +T +L++LY K GY+ AR FD++ K+ SW++++ GYA
Sbjct: 230 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA 289
Query: 89 RQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
++G+ +A+ +F + + DS + +++I + A +M VK PS
Sbjct: 290 QEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVK---LPSGL 346
Query: 145 TITNVLSS 152
T+VL+S
Sbjct: 347 E-TSVLNS 353
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N+++ Y + G +D+A F E+ +D +SWT +I GY + + ++++F +M++ +
Sbjct: 352 NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIE 411
Query: 141 PSQFTITNVLSSCA 154
P + VLS+C+
Sbjct: 412 PDEVCYLAVLSACS 425
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K + A +KL + N+++++Y K G + +A F EM +K SW +++GY +
Sbjct: 333 KQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKH 392
Query: 91 GKLDKALHVFDEI 103
G K++ +F E+
Sbjct: 393 GLGKKSVRIFYEM 405
>AT1G63130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23412854-23414746 FORWARD
Length = 630
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ +K L + ++ +MIK ++ I+ ++LIN + + +A+++F+ M
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 388
Query: 74 VKSTF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K F ++NT++ G+ + ++D+ + +F E+ R ++V++TT+I G+ Q +
Sbjct: 389 SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECD 448
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSS 152
NA +F MV D V P T + +L
Sbjct: 449 NAQIVFKQMVSDGVLPDIMTYSILLDG 475
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQ 90
+ MI+ +N ++ + LI+ + K G +V+A ++DEM +S F+++++++G+
Sbjct: 315 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 374
Query: 91 GKLDKALHVFDEIPDRDS----VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
+LD+A H+F+ + +D V++ T+I G+ + + +++F +M + + + T
Sbjct: 375 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTY 434
Query: 147 TNVLSSCAALRALD 160
T ++ R D
Sbjct: 435 TTLIHGFFQARECD 448
>AT2G17210.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:7485398-7487602 REVERSE
Length = 715
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFS-IYLTNNLINLYAKSGYIVDARNVFDEMPVK 75
LL S +L K H I+ L + I + ++++ YAK G I AR FD++ K
Sbjct: 432 LLNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEK 491
Query: 76 STFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMF 131
+ SW I+S YA G DKAL +FDE+ + ++V++ + N + + +F
Sbjct: 492 NIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIF 551
Query: 132 VDMVKDKVSPS 142
MV++ PS
Sbjct: 552 KSMVEEDHKPS 562
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KV 139
N+IL YA L A +FDE+ +RD +SW+ +I Y Q +K+F +MV + K
Sbjct: 164 NSILCMYADSDSL-SARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKT 222
Query: 140 SPSQFTITNVLSSCAALRALDIGRKIH 166
P T+T+VL +C + +D+GR +H
Sbjct: 223 EPDCVTVTSVLKACTVMEDIDVGRSVH 249
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 25 KNLSVCKSIHAQMIKLGLNFS-IYLTNNLINLYAKSGYIVD-ARNVFDEMPVKSTFSWNT 82
+++ V +S+H I+ G + + +++ N+LI++Y+K G+ VD A VFDE ++ SWN+
Sbjct: 240 EDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSK-GFDVDSAFRVFDETTCRNIVSWNS 298
Query: 83 ILSGYARQGKLDKALHVF 100
IL+G+ + D+AL +F
Sbjct: 299 ILAGFVHNQRYDEALEMF 316
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 30 CKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYAR 89
CKSIH +I+ G + ++LI+ Y + DA V D M K S +T++SG A
Sbjct: 347 CKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAH 406
Query: 90 QGKLDKALHVFDEIPD 105
G+ D+A+ +F + D
Sbjct: 407 AGRSDEAISIFCHMRD 422
>AT1G63330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23489628-23491519 FORWARD
Length = 558
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
L+ +K + +H MIK ++ I+ N+LIN + + A+ +F+ M K
Sbjct: 260 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 319
Query: 77 TF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAI 128
F ++NT++ G+ + +++ +F E+ R D+V++TT+I G +NA
Sbjct: 320 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 379
Query: 129 KMFVDMVKDKVSPSQFTITNVLSS 152
K+F MV D V P T + +L
Sbjct: 380 KVFKQMVSDGVPPDIMTYSILLDG 403
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQ 90
+ MI+ +N ++ N LI+ + K G V+A + D+M +S F++N++++G+
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 302
Query: 91 GKLDKALHVF------DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
+LDKA +F D PD D ++ T+I G+ + E+ ++F +M +
Sbjct: 303 DRLDKAKQMFEFMVSKDCFPDLD--TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 360
Query: 145 TITNVLSS 152
T T ++
Sbjct: 361 TYTTLIQG 368
>AT1G26900.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:9319756-9321474 REVERSE
Length = 572
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 31/140 (22%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+LS +S H IK+GL+ ++L LI +Y K+G I AR +FD K +WN ++
Sbjct: 242 DLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMID 301
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
YA+ G L++ + W + M +K+ P+ T
Sbjct: 302 QYAKTGLLEECV-------------W------------------LLRQMKYEKMKPNSST 330
Query: 146 ITNVLSSCAALRALDIGRKI 165
+LSSCA A +GR +
Sbjct: 331 FVGLLSSCAYSEAAFVGRTV 350
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD--KVSPSQF 144
YA+ G L+KA+ +F+ + D+D SWT MI GY A+ +F M ++ KV P++
Sbjct: 373 YAKVGLLEKAVEIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEI 432
Query: 145 TITNVLSSCA 154
T VL++C+
Sbjct: 433 TFLVVLNACS 442
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 12 DLYAFLLQTNLKSKNLSVCKSI----HAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARN 67
D ++F+ T LKS + +C SI H ++ G L N LI+ Y G I DAR
Sbjct: 124 DRFSFI--TTLKSCSRELCVSIGEGLHGIALRSGFMVFTDLRNALIHFYCVCGKISDARK 181
Query: 68 VFDEMPVK-STFSWNTILSGYARQGKLDKALHVF 100
VFDEMP +++T+++GY + K AL +F
Sbjct: 182 VFDEMPQSVDAVTFSTLMNGYLQVSKKALALDLF 215
>AT3G49170.1 | Symbols: EMB2261 | EMB2261 (embryo defective 2261) |
chr3:18226954-18229600 REVERSE
Length = 850
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 28/150 (18%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ LL++ +++++ + K +HA++I+ + L N+LI+LY+KSG A +VF+ M
Sbjct: 65 FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETM- 123
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
R GK RD VSW+ M+ Y +AIK+FV+
Sbjct: 124 --------------RRFGK-------------RDVVSWSAMMACYGNNGRELDAIKVFVE 156
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGR 163
++ + P+ + T V+ +C+ + +GR
Sbjct: 157 FLELGLVPNDYCYTAVIRACSNSDFVGVGR 186
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
+ + A VFD++ + + V+WT MI QM AI+ F+DMV +FT+++V
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275
Query: 150 LSSCAALRALDIGRKIH 166
S+CA L L +G+++H
Sbjct: 276 FSACAELENLSLGKQLH 292
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IH+Q++KLGL+ + + N LI++Y+K G I A VF+ M ++ SW ++++G+A+
Sbjct: 494 EQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKH 553
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSP 141
G + L F+++ + + V++ ++ + + + F M +D K+ P
Sbjct: 554 GFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 36/145 (24%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAK---SGYIVDARNVFDEMPVKSTFSWN 81
+NLS+ K +H+ I+ GL + + L+++YAK G + D R VFD M S SW
Sbjct: 283 ENLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWT 340
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMV-KDKVS 140
+++GY + L AI +F +M+ + V
Sbjct: 341 ALITGYMKNCNLAT------------------------------EAINLFSEMITQGHVE 370
Query: 141 PSQFTITNVLSSCAALRALDIGRKI 165
P+ FT ++ +C L +G+++
Sbjct: 371 PNHFTFSSAFKACGNLSDPRVGKQV 395
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 29 VCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYA 88
V K + Q K GL + + N++I+++ KS + DA+ F+ + K+ S+NT L G
Sbjct: 391 VGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTC 450
Query: 89 RQGKLDKALHVFDEIPDRD----SVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
R ++A + EI +R+ + ++ +++ G + ++ +VK +S +Q
Sbjct: 451 RNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP 510
Query: 145 TITNVLSSCAALRALDIGRKI 165
++S + ++D ++
Sbjct: 511 VCNALISMYSKCGSIDTASRV 531
>AT1G16480.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot apex;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT4G13650.1). | chr1:5625843-5628656
REVERSE
Length = 937
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 36 QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS-----TFSWNTILSGYARQ 90
+M LG+ S ++ +L+ +SG + KS + IL Y
Sbjct: 48 KMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVY 107
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G + + VF+E+PDR+ VSWT+++VGY+ E I ++ M + V ++ +++ V+
Sbjct: 108 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVI 167
Query: 151 SSCAALRALDIGRKI 165
SSC L+ +GR+I
Sbjct: 168 SSCGLLKDESLGRQI 182
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
K+ S+ + I Q++K GL + + N+LI++ G + A +FD+M + T SWN+I
Sbjct: 174 KDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIA 233
Query: 85 SGYARQGKLDKALHVF 100
+ YA+ G ++++ +F
Sbjct: 234 AAYAQNGHIEESFRIF 249
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+ IH ++K+G + + + N L+ +YA +G V+A VF +MP K SWN++++ +
Sbjct: 281 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 340
Query: 91 GKLDKALHVF-DEIPDRDSVSWTTMIVGYNQMACF 124
G+ AL + I SV++ T ACF
Sbjct: 341 GRSLDALGLLCSMISSGKSVNYVTFTSAL--AACF 373
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y + G++ A H+FD +P R+ VSW TM+ G ++ + ++ F M + PS F I
Sbjct: 2 YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61
Query: 147 TNVLSSCA 154
+++++C
Sbjct: 62 ASLVTACG 69
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
+H ++ GL ++ + N L+++Y K G + ++R V +MP + +WN ++ GYA
Sbjct: 384 LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDED 443
Query: 93 LDKALHVF 100
DKAL F
Sbjct: 444 PDKALAAF 451
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++S Y + G++ ++ V ++P RD V+W +I GY + + A+ F M + VS
Sbjct: 401 NALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVS 460
Query: 141 PSQFTITNVLSSC-AALRALDIGRKIH 166
+ T+ +VLS+C L+ G+ +H
Sbjct: 461 SNYITVVSVLSACLLPGDLLERGKPLH 487
>AT3G05240.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:1493684-1495381 REVERSE
Length = 548
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 75 KSTFSWNTILSG-----YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIK 129
+S +N IL+ YA+ G L A ++FD +P+R VSW ++I GY+Q E A+
Sbjct: 227 QSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALC 286
Query: 130 MFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
MF+DM+ ++P + T +V+ + +G+ IH
Sbjct: 287 MFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIH 323
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 42 LNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFD 101
+ F++ L +LI++YAK G + AR +FD MP ++ SWN+I++GY++ G ++AL +F
Sbjct: 230 VGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFL 289
Query: 102 EI------PDRD---SVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
++ PD+ SV +MI G +Q+ +A VKD
Sbjct: 290 DMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKD 334
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
+SIHA + K G + L+N+YAK+G A+ F+++ K T +W ++ G A
Sbjct: 320 QSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASH 379
Query: 91 GKLDKALHVFDEIPDR-----DSVSWTTMIVGYNQMACFENAIKMFVDM 134
G ++AL +F + ++ D +++ ++ + + E + F +M
Sbjct: 380 GHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEM 428
>AT5G16420.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:5368034-5369641 FORWARD
Length = 535
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 40 LGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP----VKSTFSWNTILSGYARQGKLDK 95
G+ +I+ N L+ K I A V DE+P V + ++ TIL GY +G ++
Sbjct: 185 FGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMES 244
Query: 96 ALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
A V +E+ DR D+ ++T ++ GY ++ F A + DM K+++ P++ T
Sbjct: 245 AKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVT 298
>AT3G14330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4779688-4782451 REVERSE
Length = 710
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 5/117 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K IHAQ++K + L N+L+++Y K G + +R VFD M K SWN +L+ YA
Sbjct: 357 KEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAIN 416
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPS 142
G +++ +++F+ + + D +++ ++ G + E + +F M + +VSP+
Sbjct: 417 GNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPA 473
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 31/142 (21%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTIL 84
K+L V + IHAQ++K + N L+ LY +SG DAR VFD M ++ +WN+++
Sbjct: 250 KDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLI 309
Query: 85 SGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQF 144
S +++ ++ + ++F ++ + ++G+ S
Sbjct: 310 SVLSKKVRVHEMFNLFRKMQEE--------MIGF-----------------------SWA 338
Query: 145 TITNVLSSCAALRALDIGRKIH 166
T+T +L +C+ + AL G++IH
Sbjct: 339 TLTTILPACSRVAALLTGKEIH 360
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 92 KLDKALHVFDEIPDRDSVS---WTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITN 148
+LD A +FD++ D ++ W M +GY++ +A+ ++VDM+ + P F+I+
Sbjct: 182 RLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISV 241
Query: 149 VLSSCAALRALDIGRKIH 166
L +C L+ L +GR IH
Sbjct: 242 ALKACVDLKDLRVGRGIH 259
>AT3G25970.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:9500116-9502056 REVERSE
Length = 646
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 32/137 (23%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM-PVKSTFSWNTILSGYAR 89
K +HA+++KLGL I + N +I+ YA G + DA+ VFD + K SWN++++G+++
Sbjct: 168 KQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSK 227
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
E+ E+A ++F+ M + V +T T +
Sbjct: 228 H-----------ELK--------------------ESAFELFIQMQRHWVETDIYTYTGL 256
Query: 150 LSSCAALRALDIGRKIH 166
LS+C+ G+ +H
Sbjct: 257 LSACSGEEHQIFGKSLH 273
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 29/136 (21%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
KS+H +IK GL TN LI++Y + P
Sbjct: 270 KSLHGMVIKKGLEQVTSATNALISMYI-------------QFPT---------------- 300
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
G ++ AL +F+ + +D +SW ++I G+ Q E+A+K F + ++ + + +L
Sbjct: 301 GTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALL 360
Query: 151 SSCAALRALDIGRKIH 166
SC+ L L +G++IH
Sbjct: 361 RSCSDLATLQLGQQIH 376
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 99 VFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRA 158
+FDE+P RDSVSW TMI GY E+A +F M + ++ + +L A+++
Sbjct: 2 LFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKR 61
Query: 159 LDIGRKIH 166
D+G ++H
Sbjct: 62 FDLGEQVH 69
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D YAF LL++ L + + IHA K G + ++ ++LI +Y+K G I AR F
Sbjct: 352 DDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCF 411
Query: 70 DEMPVK-STFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACF 124
++ K ST +WN ++ GYA+ G +L +F ++ ++ D V++T ++ +
Sbjct: 412 QQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLI 471
Query: 125 ENAIKMF 131
+ +++
Sbjct: 472 QEGLELL 478
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D Y+F LL+ K + + +H +IK G ++Y+ ++L+++YAK + DA F
Sbjct: 45 DGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAF 104
Query: 70 DEMPVKSTFSWNTILSGYAR 89
E+ ++ SWN +++G+ +
Sbjct: 105 KEISEPNSVSWNALIAGFVQ 124
>AT2G04860.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:1706787-1708535 REVERSE
Length = 582
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 37 MIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSW-----NTILSGYARQG 91
M++ G + S NL+ + G++ R+V + KS N ++S Y++
Sbjct: 32 MLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHG-VAAKSGLELDSQVKNALISFYSKCA 90
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
+L A +F E+ D+ +VSW TMI Y+Q E AI +F +M + V S TI N+LS
Sbjct: 91 ELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLS 150
Query: 152 S 152
+
Sbjct: 151 A 151
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
+L KS ++ + S+H IK GL + N LI +Y+K + +F+++
Sbjct: 243 ILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETP 302
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
SWN+++SG + G+ A VF ++ M+
Sbjct: 303 LISWNSVISGCVQSGRASTAFEVFHQM------------------------------MLT 332
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ P TI ++L+ C+ L L++G+++H
Sbjct: 333 GGLLPDAITIASLLAGCSQLCCLNLGKELH 362
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 12 DLYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
+L F Q S+ +S+H K GL + N LI+ Y+K + A +F E
Sbjct: 46 NLLPFCGQCGFVSQG----RSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFRE 101
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRD-SVSWTTMI 115
M KST SWNT++ Y++ G ++A+ VF + +++ +S T+I
Sbjct: 102 MKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTII 146
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 27 LSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSG 86
L++ K +H ++ ++ LI++YAK G V A +VF + T +WN+++SG
Sbjct: 355 LNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISG 414
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSP 141
Y+ G +AL + E+ ++ D +++ ++ N + F M+K+ +SP
Sbjct: 415 YSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIKEFGISP 474
Query: 142 S 142
+
Sbjct: 475 T 475
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 103 IPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
+P+RD+V W +I GY++ +A K+F+ M++ SPS T+ N+L C + G
Sbjct: 1 MPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQG 60
Query: 163 RKIH 166
R +H
Sbjct: 61 RSVH 64
>AT4G39952.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:18527680-18530007 FORWARD
Length = 726
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL + + +L + IH + + ++ L+ LI++YAK G++ +R +FD K
Sbjct: 490 LLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKD 549
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRD----SVSWTTMIVGYNQMACFENAIKMFV 132
WN ++SGY G ++ A+ +FD++ + D ++ ++ E K+F+
Sbjct: 550 AVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFL 609
Query: 133 DMVKDKVSP 141
M + V P
Sbjct: 610 KMHQYDVKP 618
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
YA+ G L+K+ +FD +D+V W MI GY E+AI +F M + V P+ T
Sbjct: 529 YAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTF 588
Query: 147 TNVLSSCAALRALDIGRKIHL 167
+LS+C ++ G+K+ L
Sbjct: 589 LALLSACTHAGLVEQGKKLFL 609
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 32/136 (23%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
KS+H ++K L+ +I + N+LI+LY K G + A +F E
Sbjct: 404 KSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCE------------------- 444
Query: 91 GKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
D + ++W MI Y E AI +F MV + PS T+ +L
Sbjct: 445 -------------ADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLL 491
Query: 151 SSCAALRALDIGRKIH 166
+C +L+ G+ IH
Sbjct: 492 MACVNTGSLERGQMIH 507
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDM---VKDKVSPSQ 143
Y++ G L A VFDE+PDRD V+WT +I G+ Q E + M D P+
Sbjct: 171 YSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNP 230
Query: 144 FTITNVLSSCAALRALDIGRKIH 166
T+ +C+ L AL GR +H
Sbjct: 231 RTLECGFQACSNLGALKEGRCLH 253
>AT1G06140.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:1864796-1866472 FORWARD
Length = 558
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
KS+H MI+ G+ + I++YA+ G I AR VFD MP ++ SW+++++ +
Sbjct: 332 KSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGIN 391
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD-KVSPSQ 143
G ++AL F ++ + +SV++ +++ + + K F M +D V P +
Sbjct: 392 GLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEE 449
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 54 NLYA-KSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWT 112
N++A K G V ++ +S + +I+ Y + LD A +F+ DR+ V WT
Sbjct: 222 NVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWT 281
Query: 113 TMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
T+I G+ + A +F M+++ + P+Q T+ +L SC++L +L G+ +H
Sbjct: 282 TLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
YAR G + A VFD +P+R+ +SW++MI + FE A+ F M V P+ T
Sbjct: 357 YARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTF 416
Query: 147 TNVLSSCA 154
++LS+C+
Sbjct: 417 VSLLSACS 424
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IH +K GL+ Y+ +L+ +YA+ G + A+ VFDE+PV+++ W ++ GY + K
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSK 190
Query: 93 LDKALHVF 100
+ +F
Sbjct: 191 DPEVFRLF 198
>AT1G74400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:27963953-27965341 FORWARD
Length = 462
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 31/154 (20%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
L+A + + K+ +L + IHA + KLG N I + +L+ Y+ G + AR VFDE
Sbjct: 68 LFAIKVSSAQKASSLD-GRQIHALVRKLGFNAVIQIQTSLVGFYSSVGDVDYARQVFDET 126
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
P K N +L WT MI Y + AI++F
Sbjct: 127 PEKQ----NIVL--------------------------WTAMISAYTENENSVEAIELFK 156
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M +K+ +T LS+CA L A+ +G +I+
Sbjct: 157 RMEAEKIELDGVIVTVALSACADLGAVQMGEEIY 190
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 31 KSIHAQMIKLGLNFSIYLT--NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYA 88
+ I+++ IK ++ LT N+L+N+Y KSG AR +FDE K ++ +++ GYA
Sbjct: 187 EEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYA 246
Query: 89 RQGKLDKALHVF----------DEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
G+ ++L +F D + + V++ +++ + E + F M+ D
Sbjct: 247 LNGQAQESLELFKKMKTIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIMD 305
>AT1G71490.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:26933326-26935371 REVERSE
Length = 681
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
T WN+++ YA+ GK+ A V D + RD V++T++I GY A+ +F +M +
Sbjct: 417 TMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTR 476
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKI 165
+ P T+ VLS+C+ + + G ++
Sbjct: 477 SGIKPDHVTVVAVLSACSHSKLVHEGERL 505
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y +L+ ++ +++ + +H + S+Y+ N LI++Y + + AR +FD M
Sbjct: 147 YPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMF 206
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEI----PDRDSVSWTTMIVGYNQMACFENAIK 129
+ SWN +++ YA +G +A +FD++ + ++W + G Q + A+
Sbjct: 207 ERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALG 266
Query: 130 MFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ M S + L +C+ + A+ +G++IH
Sbjct: 267 LISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIH 303
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
NT+++ Y++ L AL VF + + +W ++I GY Q+ E A + +M+
Sbjct: 319 NTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQ 378
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P+ T+ ++L CA + L G++ H
Sbjct: 379 PNSITLASILPLCARIANLQHGKEFH 404
>AT5G40410.1 | Symbols: | INVOLVED IN: biological_process unknown;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT1G08070.1); Has 12213 Blast hits to 4641
proteins in 127 species: Archae - 0; Bacteria - 0;
Metazoa - 61; Fungi - 12; Plants - 12006; Viruses - 0;
Other Eukaryotes - 134 (source: NCBI BLink). |
chr5:16171385-16173211 FORWARD
Length = 608
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 29/141 (20%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
++ +C+ +H +++K ++ + L+ Y + G+ V A +FDEMP + SWN+++S
Sbjct: 46 SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLIS 105
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
GY+ +G L K CFE +M + V + P++ T
Sbjct: 106 GYSGRGYLGK---------------------------CFEVLSRMMISEVGFR--PNEVT 136
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+++S+C + + GR IH
Sbjct: 137 FLSMISACVYGGSKEEGRCIH 157
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
+L Y++ G+L+ + VF EI DS++WT M+ Y +AIK F MV +S
Sbjct: 274 TALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGIS 333
Query: 141 PSQFTITNVLSSCAALRALDIGR 163
P T T++L++C+ ++ G+
Sbjct: 334 PDHVTFTHLLNACSHSGLVEEGK 356
>AT4G16470.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 14
plant structures; EXPRESSED DURING: 4 anthesis, C
globular stage, petal differentiation and expansion
stage, D bilateral stage, E expanded cotyledon stage;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: CRR22 (CHLORORESPIRATORY REDUCTION22);
endonuclease (TAIR:AT1G11290.1); Has 12729 Blast hits to
4676 proteins in 132 species: Archae - 0; Bacteria - 0;
Metazoa - 31; Fungi - 25; Plants - 12474; Viruses - 0;
Other Eukaryotes - 199 (source: NCBI BLink). |
chr4:9287862-9289541 REVERSE
Length = 485
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 47/155 (30%)
Query: 12 DLYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
+ YA LLQ + K + K IHAQM +G + YL L+ LYA S
Sbjct: 109 ETYAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALS------------ 156
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMF 131
D + W MI GY Q + + ++
Sbjct: 157 -----------------------------------DLIPWNAMISGYVQKGLEQEGLFIY 181
Query: 132 VDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
DM ++++ P Q+T +V +C+AL L+ G++ H
Sbjct: 182 YDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAH 216
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQ 90
K HA MIK + +I + + L+++Y K D VFD++ ++ +W +++SGY
Sbjct: 213 KRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYH 272
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
GK+ + L F+++ + + V++ ++ N + + F M +D
Sbjct: 273 GKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRD 323
>AT3G17370.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5949006-5949644 REVERSE
Length = 212
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 22 LKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWN 81
++ +L + ++A+MI+ GL N++I+ K + AR V KS ++N
Sbjct: 56 IRFSSLGRAEKLYAEMIRRGLVPDTITYNSMIHGLCKQNKLAQARKV-----SKSCSTFN 110
Query: 82 TILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
T+++GY + ++ +++F E+ R + +++TT+I G+ Q+ F A+ +F +MV +
Sbjct: 111 TLINGYCKATRVKDGMNLFCEMYRRGIVANVITYTTLIHGFRQVGDFNTALDIFQEMVSN 170
Query: 138 KVSPSQFTITNVLSSCAALRAL 159
V S T ++L + + L
Sbjct: 171 GVYSSSITFRDILPQLCSRKEL 192
>AT1G62930.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT1G63130.1); Has
29147 Blast hits to 6292 proteins in 192 species: Archae
- 8; Bacteria - 22; Metazoa - 1258; Fungi - 858; Plants
- 25291; Viruses - 0; Other Eukaryotes - 1710 (source:
NCBI BLink). | chr1:23306534-23308423 FORWARD
Length = 629
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ +K L + ++ +MIK ++ I+ ++LIN + + +A+++F+ M
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 387
Query: 74 VKSTF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K F ++NT++ G+ + ++++ + +F E+ R ++V++ T+I G Q +
Sbjct: 388 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 447
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVL 150
A K+F MV D V P T + +L
Sbjct: 448 MAQKIFKKMVSDGVPPDIITYSILL 472
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQ 90
+ MI+ +N ++ + LI+ + K G +V+A ++DEM +S F+++++++G+
Sbjct: 314 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 373
Query: 91 GKLDKALHVFDEIPDRDS----VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
+LD+A H+F+ + +D V++ T+I G+ + E +++F +M + + + T
Sbjct: 374 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 433
Query: 147 TNVLSSCAALRALDIGRKI 165
++ D+ +KI
Sbjct: 434 NTLIQGLFQAGDCDMAQKI 452
>AT1G31920.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:11461864-11463684 REVERSE
Length = 606
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 30/153 (19%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LL+ + K++ K IH Q+ KLGL +++ N+LIN+Y + G + + VF+++
Sbjct: 135 YPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLE 194
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
K+ SW++++S A G W+ ++ + M C E +K
Sbjct: 195 SKTAASWSSMVSARAGMG------------------MWSECLLLFRGM-CSETNLK---- 231
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+ + + L +CA AL++G IH
Sbjct: 232 -------AEESGMVSALLACANTGALNLGMSIH 257
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
Y + G LDKALH+F ++ R++++++ MI G E+A++MF M+K+ + P
Sbjct: 279 YVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVY 338
Query: 147 TNVLSSCAALRALDIGRKI 165
+VL++C+ + GR++
Sbjct: 339 VSVLNACSHSGLVKEGRRV 357
>AT1G63630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23587298-23588220 FORWARD
Length = 257
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ +K + +S + I+ +M++ + + N++I+ + K + DA+ + D M
Sbjct: 83 FSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMA 142
Query: 74 VKS----TFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K +++T+++GY + ++D + +F E+ R ++V++TT+I G+ Q+ +
Sbjct: 143 SKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLD 202
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRAL 159
A + +M+ V+P T +L+ + + L
Sbjct: 203 AAQDLLNEMISCGVAPDYITFHCMLAGLCSKKEL 236
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE
Length = 634
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
L+ +K + ++ MIK ++ I+ N+L+N + + A+ +F+ M K
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395
Query: 77 TF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAI 128
F ++NT++ G+ + +++ +F E+ R D+V++TT+I G +NA
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 455
Query: 129 KMFVDMVKDKVSPSQFTITNVLSS 152
K+F MV D V P T + +L
Sbjct: 456 KVFKQMVSDGVPPDIMTYSILLDG 479
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQ 90
+ MI+ +N ++ N LI+ + K G V+A ++D+M +S F++N++++G+
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378
Query: 91 GKLDKALHVFDEIPDRDS----VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
+LDKA +F+ + +D V++ T+I G+ + E+ ++F +M + T
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438
Query: 147 TNVLSS 152
T ++
Sbjct: 439 TTLIQG 444
>AT1G77340.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:29068343-29069828 REVERSE
Length = 441
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARN----VFDEMPVKSTFSWNTILSG 86
K ++ +M++ ++ IY N L+N Y K GY+V+A+ + F++ + ++G
Sbjct: 140 KRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITG 199
Query: 87 YARQGKLDKALHVFDEIPD----RDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
+ R+ ++D A VF E+ R+ VS+T +I G + + A+ + V M D P+
Sbjct: 200 HCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPN 259
Query: 143 QFTIT 147
T T
Sbjct: 260 VRTYT 264
>AT2G37230.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15637177-15639450 REVERSE
Length = 757
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 12 DLYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
D++ L+++ K+ + I +M LG+ +I N+L + + G + A+ F++
Sbjct: 186 DMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNK 245
Query: 72 M------PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQM 121
M P + T+ N +L G+ +L+ AL F+++ R D ++ TMI G+ +
Sbjct: 246 MVSEGVEPTRHTY--NLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRF 303
Query: 122 ACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
+ A K+FV+M +K+ PS + T ++ A+ +D G +I
Sbjct: 304 KKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRI 347
>AT5G41170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:16478860-16480443 REVERSE
Length = 527
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTF----SWNTILSG 86
+ ++ +MI++ + +I+ +LIN + G + +AR +F M K F ++ ++++G
Sbjct: 267 EELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLING 326
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
+ + K+D A+ +F E+ + +++++TT+I G+ Q+ A ++F MV V P+
Sbjct: 327 FCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPN 386
Query: 143 QFTITNVLSSC 153
T NVL C
Sbjct: 387 IRTY-NVLLHC 396
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGY 87
S+ M K + + N LI+ + K G +DA +++EM S F++ ++++G+
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292
Query: 88 ARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
+G +D+A +F + + D V++T++I G+ + ++A+K+F +M + ++ +
Sbjct: 293 CMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNT 352
Query: 144 FTITNVLSSCAALRALDIGRKI 165
T T ++ + ++ +++
Sbjct: 353 ITYTTLIQGFGQVGKPNVAQEV 374
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+Q + +V + + + M+ G+ +I N L++ +G + A +F++M
Sbjct: 355 YTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQ 414
Query: 74 VK-------STFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMAC--- 123
+ + +++N +L G GKL+KAL VF+++ R+ Q C
Sbjct: 415 KREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAG 474
Query: 124 -FENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+NA+ +F + V P+ T T ++S
Sbjct: 475 KVKNAVNLFCSLPSKGVKPNVVTYTTMISG 504
>AT5G38730.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:15510901-15512691 FORWARD
Length = 596
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
+Y L+ KS + + + ++M + G+ I+ N LI++Y K +A +V D M
Sbjct: 205 VYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRM 264
Query: 73 P----VKSTFSWNTILSGYARQGKLDKALHVFDEIPD---RDSVSWTTMIVGYNQMACFE 125
+ ++N+ + G++R+G++ +A +F EI D + V++TT+I GY +M +
Sbjct: 265 ERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLIDGYCRMNDID 324
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVL 150
A+++ M SP T ++L
Sbjct: 325 EALRLREVMESRGFSPGVVTYNSIL 349
>AT1G12300.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:4184163-4186076 REVERSE
Length = 637
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ + +K L + +H +MI G+ +LI+ + K ++ A + D M
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395
Query: 74 VKST----FSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K ++N +++GY + ++D L +F ++ R D+V++ T+I G+ ++
Sbjct: 396 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN 455
Query: 126 NAIKMFVDMVKDKVSPSQFT----ITNVLSSCAALRALDIGRKIH 166
A ++F +MV KV P+ T + + + + +AL+I KI
Sbjct: 456 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE 500
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+ K +L + M+ G + +I N LIN Y K+ I D +F +M
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 430
Query: 74 VKS----TFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
++ T ++NT++ G+ GKL+ A +F E+ R + V++ ++ G E
Sbjct: 431 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESE 490
Query: 126 NAIKMFVDMVKDKVS 140
A+++F + K K+
Sbjct: 491 KALEIFEKIEKSKME 505
>AT1G18485.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6363172-6366084 FORWARD
Length = 970
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 31/150 (20%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
LL K K+L + K +H +I+ L +++ ++++LY G + + +FD M KS
Sbjct: 502 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKS 561
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
SWNT+++GY + G D+AL VF R V + + G + M F
Sbjct: 562 LVSWNTVITGYLQNGFPDRALGVF-----RQMVLYGIQLCGISMMPVF------------ 604
Query: 137 DKVSPSQFTITNVLSSCAALRALDIGRKIH 166
+C+ L +L +GR+ H
Sbjct: 605 --------------GACSLLPSLRLGREAH 620
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 27/141 (19%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
++ + ++H ++K GL +++ N L++ Y G++ DA +FD MP ++ SWN+++
Sbjct: 202 DVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIR 261
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
++ G +++ + E+ + EN F+ P T
Sbjct: 262 VFSDNGFSEESFLLLGEMME-------------------ENGDGAFM--------PDVAT 294
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+ VL CA R + +G+ +H
Sbjct: 295 LVTVLPVCAREREIGLGKGVH 315
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 33/154 (21%)
Query: 15 AFLLQTNLKSKNLSVCKSIHAQMIKLG--LNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
LLQ + K K++ + + IH Q++ L L +I +YA G D+R VFD +
Sbjct: 88 GLLLQASGKRKDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDAL 146
Query: 73 PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
K+ F WN ++S Y+R D+ L F E+ +S T ++
Sbjct: 147 RSKNLFQWNAVISSYSRNELYDEVLETFIEM-----ISTTDLL----------------- 184
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
P FT V+ +CA + + IG +H
Sbjct: 185 --------PDHFTYPCVIKACAGMSDVGIGLAVH 210
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L + + HA +K L ++ +LI++YAK+G I + VF+ + KST SWN ++
Sbjct: 612 SLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIM 671
Query: 86 GYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVK 136
GY G +A+ +F+E+ + D +++ ++ N ++ ++D +K
Sbjct: 672 GYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLR-YLDQMK 725
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
+++ YA+ G + ++ VF+ + ++ + SW MI+GY + AIK+F +M + +P
Sbjct: 637 SLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNP 696
Query: 142 SQFTITNVLSSC-------AALRALD 160
T VL++C LR LD
Sbjct: 697 DDLTFLGVLTACNHSGLIHEGLRYLD 722
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++ YA+ G L A VF I + SW +I G+ Q ++ + M +
Sbjct: 434 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLL 493
Query: 141 PSQFTITNVLSSCAALRALDIGRKIH 166
P FT+ ++LS+C+ L++L +G+++H
Sbjct: 494 PDSFTVCSLLSACSKLKSLRLGKEVH 519
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 23 KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
+ + + + K +H +KL L+ + L N L+++Y+K G I +A+ +F K+ SWNT
Sbjct: 304 REREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNT 363
Query: 83 ILSGYARQGKLDKALHVFDEI 103
++ G++ +G V ++
Sbjct: 364 MVGGFSAEGDTHGTFDVLRQM 384
>AT1G74850.1 | Symbols: PTAC2 | PTAC2 (PLASTID TRANSCRIPTIONALLY
ACTIVE2) | chr1:28119237-28122314 REVERSE
Length = 862
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM- 72
Y+ L++T K + L + +M G I N L+ YAKSG I +A VF +M
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344
Query: 73 -----PVKSTFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMAC 123
P +T+S +L+ + + G+ D +F E+ D D+ ++ +I + +
Sbjct: 345 AAGCTPNANTYS--VLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 124 FENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKI 165
F+ + +F DMV++ + P T ++ +C + RKI
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 80 WNTILSGYARQGKLDKALHVFDEIPD----RDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
+ ++S R+G LDK L VFDE+P R S+T +I Y + +E ++++ M
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203
Query: 136 KDKVSPSQFTITNVLSSCA 154
+K+SPS T V+++CA
Sbjct: 204 NEKISPSILTYNTVINACA 222
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 16/120 (13%)
Query: 52 LINLYAKSGYIVDARNVFDEMPV----KSTFSWNTILSGYARQGKLDKALHVFDEIPDRD 107
+I+L + G + VFDEMP +S FS+ +++ Y R G+ + +L + D + +
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNE- 205
Query: 108 SVSWTTMIVGYNQM--AC------FENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRAL 159
+ I+ YN + AC +E + +F +M + + P T +LS+C A+R L
Sbjct: 206 --KISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSAC-AIRGL 262
>AT5G39710.1 | Symbols: EMB2745 | EMB2745 (EMBRYO DEFECTIVE 2745) |
chr5:15895729-15897972 FORWARD
Length = 747
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L++ K N +HA+M++ GL S+ +LI+ K+G + A D+M
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 74 VK----STFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
V+ + ++ T++ G++++G +++A V E+ D V++ +I G+ E
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSS 152
+AI + DM + +SP + + VLS
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 41 GLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQGKLDKA 96
G + S+ N LIN + +G + DA V ++M K S++T+LSG+ R +D+A
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 97 LHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
L V E+ ++ D+++++++I G+ + + A ++ +M++ + P +FT T ++++
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINA 529
Query: 153 CAALRALDIGRKIH 166
L+ ++H
Sbjct: 530 YCMEGDLEKALQLH 543
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L++ + N+ V ++ +M G ++ N LI+ Y K I D + M
Sbjct: 208 YNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA 267
Query: 74 VK----STFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
+K + S+N +++G R+G++ + V E+ R D V++ T+I GY + F
Sbjct: 268 LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH 327
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSS-CAA 155
A+ M +M++ ++PS T T+++ S C A
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM- 72
Y+ +L +S ++ + +M++ G+ ++LI + + +A ++++EM
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512
Query: 73 ----PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACF 124
P F++ +++ Y +G L+KAL + +E+ ++ D V+++ +I G N+ +
Sbjct: 513 RVGLP-PDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRT 571
Query: 125 ENAIKMFVDMVKDKVSPSQFTITNVLSSCA 154
A ++ + + ++ PS T ++ +C+
Sbjct: 572 REAKRLLLKLFYEESVPSDVTYHTLIENCS 601
>AT1G09680.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3134107-3135930 REVERSE
Length = 607
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
++ L+ + ++ + + K + +M+ GL I L N L+N + K+G +V ARN+ D M
Sbjct: 347 IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406
Query: 73 ------PVKSTFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMA 122
P K T++ T++ G+ R G ++ AL + E+ + D V ++ ++ G +
Sbjct: 407 IRRGLRPDKITYT--TLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEG 464
Query: 123 CFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+A + +M++ + P T T ++ +
Sbjct: 465 RVIDAERALREMLRAGIKPDDVTYTMMMDA 494
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGY 87
+ +++ G ++Y+ N L+N + K G I DA+ VFDE+ +S S+NT+++GY
Sbjct: 226 GFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285
Query: 88 ARQGKLDKAL---HVFDEIPDR-DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
+ G LD+ H ++ R D +++ +I + + A +F +M K + P+
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPND 345
Query: 144 FTITNVL 150
T ++
Sbjct: 346 VIFTTLI 352
>AT1G62670.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23204773-23206665 REVERSE
Length = 630
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D++ F L+ +K L + ++ +M+K ++ SI ++LIN + + +A+ +F
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 70 DEMPVKSTF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQM 121
+ M K F ++NT++ G+ + ++++ + VF E+ R ++V++ +I G Q
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444
Query: 122 ACFENAIKMFVDMVKDKVSPSQFTITNVL 150
+ A ++F +MV D V P+ T +L
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 62/108 (57%), Gaps = 8/108 (7%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK----STFSWNTILSGYARQ 90
+ MI+ +N ++ + LI+ + K G +V+A ++DEM + S +++++++G+
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDM 134
+LD+A +F+ + + D V++ T+I G+ + E +++F +M
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 422
>AT2G17140.1 | Symbols: | EXPRESSED IN: 7 plant structures;
EXPRESSED DURING: F mature embryo stage, C globular
stage, petal differentiation and expansion stage, D
bilateral stage, E expanded cotyledon stage; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT1G62910.1); Has 25910 Blast hits to 6027
proteins in 187 species: Archae - 6; Bacteria - 20;
Metazoa - 625; Fungi - 635; Plants - 23410; Viruses - 0;
Other Eukaryotes - 1214 (source: NCBI BLink). |
chr2:7462820-7465740 FORWARD
Length = 874
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
LY LL++ +K + + ++ M+ G+ Y N LI S + AR +FDEM
Sbjct: 114 LYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEM 173
Query: 73 PVKS----TFSWNTILSGYARQGKLDKALHV------FDEIPDRDSVSWTTMIVGYNQMA 122
P K F++ ++ GY + G DK L + F +P++ V + T++ + +
Sbjct: 174 PEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNK--VIYNTIVSSFCREG 231
Query: 123 CFENAIKMFVDMVKDKVSPSQFTITNVLSS-CAALRALDIGR 163
+++ KM M ++ + P T + +S+ C + LD R
Sbjct: 232 RNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASR 273
>AT3G63370.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:23402080-23405991 FORWARD
Length = 1017
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 32/157 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ LL+ K +++ +H+ ++KLG + + ++ N L+++YAK+ + AR +FD
Sbjct: 148 FPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 207
Query: 74 VKS-TFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFV 132
K WN+ILS Y+ GK + L +F E
Sbjct: 208 EKGDAVLWNSILSSYSTSGKSLETLELFRE------------------------------ 237
Query: 133 DMVKDKVSPSQFTITNVLSSCAALRALDIGRKIHLCV 169
M +P+ +TI + L++C +G++IH V
Sbjct: 238 -MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASV 273
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 31/141 (21%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
NL +HA +IK G + ++ + N LI++Y+K T
Sbjct: 364 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNL--------------------TCYM 403
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
G A F + D+D +SWTT+I GY Q C A+++F D+ K ++ +
Sbjct: 404 GRA-----------FLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMI 452
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+ ++L + + L+++ I ++IH
Sbjct: 453 LGSILRASSVLKSMLIVKEIH 473
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 57/111 (51%)
Query: 56 YAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMI 115
YAK G + A + + N +++ Y R GK+ +A + ++ + D V+W ++I
Sbjct: 262 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 321
Query: 116 VGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
GY Q ++ A++ F DM+ + ++T+++++ L L G ++H
Sbjct: 322 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELH 372
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 87 YARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
YA G L A VFD I + + +T+MI Y C + A+++F M + VSP +
Sbjct: 595 YACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISF 654
Query: 147 TNVLSSCAALRALDIGR 163
+L +C+ LD GR
Sbjct: 655 LALLYACSHAGLLDEGR 671
>AT4G14170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:8176709-8178085 REVERSE
Length = 458
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGK 92
IH +KLG + S+++++ L+ +Y G ++ AR +FD+MPV+ + + + GY +QG+
Sbjct: 137 IHVLCLKLGFSSSLFVSSALVIMYVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGE 196
Query: 93 LDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENA 127
L +F E+ DSV ++++ Q+ ++
Sbjct: 197 AMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKHG 235
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N I Y + LD A VF + RD +SW+++I+GY + K+F +M+K+ +
Sbjct: 255 NAITDMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIE 314
Query: 141 PSQFTITNVLSSCA 154
P+ T VLS+CA
Sbjct: 315 PNAVTFLGVLSACA 328
>AT1G12620.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:4294883-4296748 REVERSE
Length = 621
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 12 DLYAF--LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
D+ AF L+ +K L + +H +MI+ G++ +LI+ + K + A ++
Sbjct: 316 DVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375
Query: 70 DEMPVKSTF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQM 121
D M K ++N +++GY + +D L +F ++ R D+V++ T+I G+ ++
Sbjct: 376 DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 435
Query: 122 ACFENAIKMFVDMVKDKVSPS----QFTITNVLSSCAALRALDIGRKIH 166
E A ++F +MV +V P + + + + +AL+I KI
Sbjct: 436 GKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+ K L + M+ G +I N LIN Y K+ I D +F +M
Sbjct: 355 YTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMS 414
Query: 74 VKS----TFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
++ T ++NT++ G+ GKL+ A +F E+ R D VS+ ++ G E
Sbjct: 415 LRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPE 474
Query: 126 NAIKMFVDMVKDKVS 140
A+++F + K K+
Sbjct: 475 KALEIFEKIEKSKME 489
>AT3G18970.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:6543699-6545117 REVERSE
Length = 472
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 27 LSVCKSIHAQMIKLGLNF-SIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
L V + +H + KLG + S + L++ YAK+G + AR VFDEMP +++ +WN ++
Sbjct: 127 LRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIG 186
Query: 86 GYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFT 145
GY D+ + + +V + + +C + ++ P+ T
Sbjct: 187 GYCSH-------------KDKGNHNARKAMVLFRRFSCCGSGVR-----------PTDTT 222
Query: 146 ITNVLSSCAALRALDIGRKIH 166
+ VLS+ + L+IG +H
Sbjct: 223 MVCVLSAISQTGLLEIGSLVH 243
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 19 QTNLKSKNLSVCKSIHAQMIKLGL--NFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS 76
QT L L + +H + KLG +++ L+++Y+K G + +A +VF+ M VK+
Sbjct: 232 QTGL----LEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKN 287
Query: 77 TFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFV 132
F+W ++ +G A G+ ++ ++ + + + + +++T+++ Y + E I++F
Sbjct: 288 VFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFK 347
Query: 133 DMVKDKVSPSQFTITNVLS 151
M ++F +T V+
Sbjct: 348 SM------KTRFGVTPVIE 360
>AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23299060-23303162 FORWARD
Length = 1133
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQ 90
+ MI+ +N ++ + LI+ + K G +V+A ++DEM +S F+++++++G+
Sbjct: 317 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 376
Query: 91 GKLDKALHVFDEIPDRDS----VSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
+LD+A H+F+ + +D V+++T+I G+ + E +++F +M + + + T
Sbjct: 377 DRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 436
Query: 147 TNVLSSCAALRALD 160
T ++ R D
Sbjct: 437 TTLIHGFFQARDCD 450
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ +K L + ++ +MIK ++ +I+ ++LIN + + +A+ + + M
Sbjct: 931 FSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMI 990
Query: 74 VKSTF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K ++NT+++G+ + ++DK + +F E+ R ++V++TT+I G+ Q +
Sbjct: 991 RKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 1050
Query: 126 NAIKMFVDMVKDKVSPSQFT 145
NA +F MV V P+ T
Sbjct: 1051 NAQMVFKQMVSVGVHPNILT 1070
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ +K L + ++ +MIK ++ I+ ++LIN + + +A+++F+ M
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 390
Query: 74 VKSTF----SWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K F +++T++ G+ + ++++ + +F E+ R ++V++TT+I G+ Q +
Sbjct: 391 SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 450
Query: 126 NAIKMFVDMVKDKVSPSQFT 145
NA +F MV V P+ T
Sbjct: 451 NAQMVFKQMVSVGVHPNILT 470
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 12 DLYAFLLQTNL--KSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVF 69
DLY + + N + LS+ ++ A+M+KLG I ++L+N Y S I DA +
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 70 DEMPV----KSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQM 121
D+M TF++ T++ G K +A+ + D++ R D V++ T++ G +
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 122 ACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALD 160
+ A+ + M K K+ ++ + +D
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMD 275
>AT5G02860.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:654102-656561 FORWARD
Length = 819
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 12/151 (7%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LL ++ + SI +M G +I N I +Y G + +FDE+
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN 446
Query: 74 V----KSTFSWNTILSGYARQGKLDKALHVFDE------IPDRDSVSWTTMIVGYNQMAC 123
V +WNT+L+ + + G + VF E +P+R++ + T+I Y++
Sbjct: 447 VCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERET--FNTLISAYSRCGS 504
Query: 124 FENAIKMFVDMVKDKVSPSQFTITNVLSSCA 154
FE A+ ++ M+ V+P T VL++ A
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALA 535
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 33 IHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV----KSTFSWNTILSGYA 88
+ +M G ++ N L+++Y KS +A V +EM + S ++N+++S YA
Sbjct: 301 VFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYA 360
Query: 89 RQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
R G LD+A+ + +++ ++ D ++TT++ G+ + E+A+ +F +M P+
Sbjct: 361 RDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN 418
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 8/146 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LL KS + +M+ G + SI N+LI+ YA+ G + +A + ++M
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA 376
Query: 74 VKST----FSWNTILSGYARQGKLDKALHVFDEIPD----RDSVSWTTMIVGYNQMACFE 125
K T F++ T+LSG+ R GK++ A+ +F+E+ + + ++ I Y F
Sbjct: 377 EKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFT 436
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLS 151
+K+F ++ +SP T +L+
Sbjct: 437 EMMKIFDEINVCGLSPDIVTWNTLLA 462
>AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23388884-23390728 REVERSE
Length = 614
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 43/161 (26%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQ 90
+ M++ +N ++ N+LI+ +AK G +++A +FDEM +S ++N++++G+
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358
Query: 91 GKLDKALHVF------DEIPD------------------------RD---------SVSW 111
+LD+A +F D +PD RD +V++
Sbjct: 359 DRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTY 418
Query: 112 TTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
TT+I G+ Q + +NA +F MV D V P+ T +L
Sbjct: 419 TTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459
>AT1G53330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:19896027-19897442 FORWARD
Length = 471
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 51 NLINLYAKSGYIVDARNVFDEMP-------VKSTFSWNTILSGYARQGKLDKALHVFDEI 103
N+IN + + A ++FDEMP VKS S + L K+ + L DE
Sbjct: 88 NVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEF 147
Query: 104 PDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
D+ ++ +I G +Q CF++A+K+F +MVK KV P+ T ++
Sbjct: 148 GKPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLI 194
>AT1G34160.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:12441393-12443256 FORWARD
Length = 558
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 43 NFSIYLTNNLINLYAKSGYIVDARNVFDEMP-VKSTFSWNTILSGYARQGKLDKALHVFD 101
N ++ ++N I++Y+K G++ A VF++ KS +WNT+++G+A G+ +AL +FD
Sbjct: 238 NDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFD 297
Query: 102 EIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ---FTITNVLSSCA 154
++ D D VS+ + E + +F +M V + + ++LS
Sbjct: 298 KLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDLLSRAG 357
Query: 155 ALR-ALDI 161
LR A DI
Sbjct: 358 RLREAHDI 365
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 15 AFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV 74
+F L+ ++ S +H Q+ + GL+ L L++ Y+K+G ++ A +FDEMPV
Sbjct: 113 SFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPV 172
Query: 75 KSTFSWNTILSGYARQGKLDKALHVF 100
+ SWN +++G + +A+ ++
Sbjct: 173 RDVASWNALIAGLVSGNRASEAMELY 198
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 82 TILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
T+L Y++ G L A +FDE+P RD SW +I G A++++ M + +
Sbjct: 149 TLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRR 208
Query: 142 SQFTITNVLSSCAALRALDIGRKI 165
S+ T+ L +C+ L + G I
Sbjct: 209 SEVTVVAALGACSHLGDVKEGENI 232
>AT5G16640.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:5461031-5462545 FORWARD
Length = 504
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP--- 73
LL + LS+ S +MIKLG SI +L+N + + + DA +FD+M
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 74 -VKSTFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAI 128
+ +NTI+ G + ++D AL + + + D V++ ++I G + +A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 129 KMFVDMVKDKVSPSQFTITNVLSSC 153
+M M K ++ P FT ++ +C
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDAC 266
>AT5G65560.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:26201012-26203759 REVERSE
Length = 915
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKST----FSWNTILSG 86
K ++ +M++ + +IY N ++N Y K G + +A ++ F++ +++ G
Sbjct: 203 KQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMG 262
Query: 87 YARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
Y ++ LD A VF+E+P R+ V++T +I G + A+ +FV M D+ P+
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322
Query: 143 QFTITNVLSS-CAALR 157
T T ++ S C + R
Sbjct: 323 VRTYTVLIKSLCGSER 338
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK----STFSWNTILSG 86
+ + QM++ GL ++ N LIN Y K G I DA +V + M + +T ++N ++ G
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG 437
Query: 87 YARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
Y + + KA+ V +++ +R D V++ ++I G + F++A ++ M + P
Sbjct: 438 YCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Query: 143 QFTITNVLSS-CAALR 157
Q+T T+++ S C + R
Sbjct: 497 QWTYTSMIDSLCKSKR 512
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 27 LSVCKSIHA-QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM----PVKSTFSWN 81
L +C+ ++ + +L I N L+N A+ G + + + V+ EM + +++N
Sbjct: 163 LDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYN 222
Query: 82 TILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKD 137
+++GY + G +++A +I D D ++T++I+GY Q ++A K+F +M
Sbjct: 223 KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK 282
Query: 138 KVSPSQFTITNVLSSCAALRALD 160
++ T+++ R +D
Sbjct: 283 GCRRNEVAYTHLIHGLCVARRID 305
>AT1G22960.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:8128086-8130242 REVERSE
Length = 718
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 8/145 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM- 72
Y L+ K+ + + H M + G + Y N LI Y K G DA V DEM
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 335
Query: 73 -----PVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENA 127
P ST+ N + G++D A + + D VS+ T++ GY +M F A
Sbjct: 336 NAGIYPTTSTY--NIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEA 393
Query: 128 IKMFVDMVKDKVSPSQFTITNVLSS 152
+F D+ + PS T ++
Sbjct: 394 SLLFDDLRAGDIHPSIVTYNTLIDG 418
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 42 LNFSIYLTNNLINLYAKS----GYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKAL 97
LN IY T + N+Y + G I DAR + M S+NT++ GY + GK +A
Sbjct: 335 LNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEAS 394
Query: 98 HVFDEIPDRD----SVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+FD++ D V++ T+I G + E A ++ +M + P T T ++
Sbjct: 395 LLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKG 453
>AT3G13150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4227975-4229630 REVERSE
Length = 551
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 55 LYAKSGYIVDARNVFDEMPV----KSTFSWNTILSGYARQGKLDKALHVFDEIPDR---- 106
LY SG A +FDEMP ++ S+N +LS Y KLD+A+ F E+P++
Sbjct: 131 LYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGIT 190
Query: 107 -DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL 150
D V++ TMI + ++ + +F ++ K+ P + +L
Sbjct: 191 PDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLL 235
>AT1G09900.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3218133-3219929 FORWARD
Length = 598
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LL K K + +M+ G I N ++ K G + DA + +++
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441
Query: 74 VKST----FSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K ++NT++ G A+ GK KA+ + DE+ + D++++++++ G ++ +
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVD 501
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALD 160
AIK F + + + P+ T +++ R D
Sbjct: 502 EAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTD 536
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 35 AQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP----VKSTFSWNTILSGYARQ 90
A M++ G + S+ N LIN + G + A ++ ++MP ++ S+N +L G+ ++
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392
Query: 91 GKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTI 146
K+D+A+ + + R D V++ TM+ + E+A+++ + SP T
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY 452
Query: 147 TNVLSSCAALRALDIGRKIHL 167
V+ A +A G+ I L
Sbjct: 453 NTVIDGLA--KAGKTGKAIKL 471
>AT1G12775.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN:
7 plant structures; EXPRESSED DURING: F mature embryo
stage, petal differentiation and expansion stage, D
bilateral stage, E expanded cotyledon stage; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT1G12300.1); Has 27792 Blast hits to 6269
proteins in 197 species: Archae - 2; Bacteria - 23;
Metazoa - 895; Fungi - 767; Plants - 24554; Viruses - 0;
Other Eukaryotes - 1551 (source: NCBI BLink). |
chr1:4353906-4355840 FORWARD
Length = 644
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ + +K L + +M++ G+ + N+LI+ + K + +A + D M
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395
Query: 74 VKST----FSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K ++N +++GY + ++D L +F E+ R ++V++ T++ G+ Q E
Sbjct: 396 SKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLE 455
Query: 126 NAIKMFVDMVKDKVSP 141
A K+F +MV +V P
Sbjct: 456 VAKKLFQEMVSRRVRP 471
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 37 MIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQGK 92
MI G + I N LIN Y K+ I D +F EM ++ T ++NT++ G+ + GK
Sbjct: 394 MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGK 453
Query: 93 LDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
L+ A +F E+ R D VS+ ++ G E A+++F + K K+
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKME 505
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 36 QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQG 91
+M++ G + ++N+ KSG A + +M ++ ++ I+ G + G
Sbjct: 218 RMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDG 277
Query: 92 KLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTIT 147
LD A ++F+E+ + D +++ T+I G+ +++ K+ DM+K K+SP+ T +
Sbjct: 278 SLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFS 337
Query: 148 NVLSS 152
++ S
Sbjct: 338 VLIDS 342
>AT1G55890.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:20901364-20902560 FORWARD
Length = 398
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 52 LINLYAKSGYIVDARNVFDEMP----VKSTFSWNTILSGYARQGKLDKALHVFDEIPDR- 106
+I+LY K+G +A+ VF+EMP +S S+N +LS Y K D +F+E+P +
Sbjct: 115 IISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKL 174
Query: 107 ----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
D VS+ T+I + A+ + ++ + P T +L S ++G
Sbjct: 175 SIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELG 234
Query: 163 RKI 165
+I
Sbjct: 235 EEI 237
>AT1G06580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:2014440-2015942 REVERSE
Length = 500
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y L+ S V I + M+++G++ + + LI++Y K G +++A+ ++EM
Sbjct: 222 YNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMI 281
Query: 74 VKST----FSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
+S ++N++++G G LD+A V + + + ++V++ T+I GY + +
Sbjct: 282 QRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVD 341
Query: 126 NAIKMFVDMVKDKVSPSQFT 145
+ +K+ M +D V FT
Sbjct: 342 DGMKILCVMSRDGVDGDTFT 361
>AT2G15690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:6831855-6833594 REVERSE
Length = 579
Score = 54.3 bits (129), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 12 DLYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
+ + L ++ K+L K +H ++ L N +I+++ + I DA+ VFD
Sbjct: 237 ECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDH 296
Query: 72 MPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENA 127
M K SW+ ++ Y+ G D ALH+F+E+ + ++ T+ + + E A
Sbjct: 297 MVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEA 356
Query: 128 IKMFVDMVKDK-VSPSQ---FTITNVLSSCAAL 156
F M + +SP + VL C L
Sbjct: 357 FLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHL 389
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N ++S + + A VFD + D+D SW M+ Y+ ++A+ +F +M K +
Sbjct: 275 NMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLK 334
Query: 141 PSQFTITNVLSSCAALRALD 160
P++ T V +CA + ++
Sbjct: 335 PNEETFLTVFLACATVGGIE 354
>AT1G31790.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:11394744-11395973 REVERSE
Length = 409
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N +L + G+LD +FD +P RD SW + +G +M +E+A +FV M+K
Sbjct: 127 NRLLLMHVSCGRLDITRQMFDRMPHRDFHSWAIVFLGCIEMGDYEDAAFLFVSMLKHSQK 186
Query: 141 -----PSQFTITNVLSSCAALRALDIGRKIH-LC 168
PS + + VL +CA +R ++G+++H LC
Sbjct: 187 GAFKIPS-WILGCVLKACAMIRDFELGKQVHALC 219
>AT5G46100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:18694316-18695734 REVERSE
Length = 472
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 80/156 (51%), Gaps = 10/156 (6%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDAR-NVFDEM 72
Y +L ++ L++ + M ++GL ++ N LI ++ VDA +F EM
Sbjct: 124 YVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEM 183
Query: 73 PVKS----TFSWNTILSGYARQGKLDKALHVFDEIPDRDS----VSWTTMIVGYNQMACF 124
P + ++++ T++SG R G++D+A +F E+ ++D V++T++I G
Sbjct: 184 PKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNV 243
Query: 125 ENAIKMFVDMVKDKVSPSQFTITNVLSS-CAALRAL 159
+ A++ +M + P+ FT ++++ C R+L
Sbjct: 244 DEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSL 279
>AT2G31400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:13387201-13390550 REVERSE
Length = 918
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y LL K + + I AQM + ++ + +I+ +AK+G +A N+F EM
Sbjct: 377 YNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436
Query: 74 ----VKSTFSWNTILSGYARQGKLDKALHVFDEIPD----RDSVSWTTMIVGYNQMACFE 125
S+NT+LS Y + G+ ++AL + E+ +D V++ ++ GY + ++
Sbjct: 437 YLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496
Query: 126 NAIKMFVDMVKDKVSPSQFTITNVL 150
K+F +M ++ V P+ T + ++
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLI 521
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y+ ++ K+ ++ +M LG+ N L+++Y K G +A ++ EM
Sbjct: 412 YSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA 471
Query: 74 V----KSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSV-----SWTTMIVGYNQMACF 124
K ++N +L GY +QGK D+ VF E+ R+ V +++T+I GY++ +
Sbjct: 472 SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM-KREHVLPNLLTYSTLIDGYSKGGLY 530
Query: 125 ENAIKMFVD 133
+ A+++F +
Sbjct: 531 KEAMEIFRE 539
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 36 QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP----VKSTFSWNTILSGYARQG 91
+M + G+ N+L+ + ++ G ARN+FDEM + FS+NT+L + G
Sbjct: 329 EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGG 388
Query: 92 KLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDM 134
++D A + ++P + + VS++T+I G+ + F+ A+ +F +M
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM 435
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 29 VCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVK----STFSWNTIL 84
+++ +M + ++ N L++ K G + A + +MPVK + S++T++
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVI 416
Query: 85 SGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMV 135
G+A+ G+ D+AL++F E+ D VS+ T++ Y ++ E A+ + +M
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA 471
>AT3G53700.1 | Symbols: MEE40 | MEE40 (maternal effect embryo arrest
40) | chr3:19900303-19902567 FORWARD
Length = 754
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
+ ++Q ++ +L I QM++ G ++S N +++ + K G + DA N EM
Sbjct: 227 FTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMS 286
Query: 74 VKSTF-----SWNTILSGYARQGKLDKALHVFD----EIPDRDSVSWTTMIVGYNQMACF 124
+ F ++NT+++G + G + A+ + D E D D ++ ++I G ++
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV 346
Query: 125 ENAIKMFVDMVKDKVSPSQFTITNVLSS 152
+ A+++ M+ SP+ T ++S+
Sbjct: 347 KEAVEVLDQMITRDCSPNTVTYNTLIST 374
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 17 LLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPV-- 74
L+Q ++N V + +M G + N LI+ G + +A N+ +M +
Sbjct: 406 LIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 75 --KSTFSWNTILSGYARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAI 128
+S ++NT++ G+ + K +A +FDE+ R+SV++ T+I G + E+A
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAA 525
Query: 129 KMFVDMVKDKVSPSQFTITNVLS 151
++ M+ + P ++T ++L+
Sbjct: 526 QLMDQMIMEGQKPDKYTYNSLLT 548
>AT1G52620.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:19603828-19606287 FORWARD
Length = 819
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFD-- 70
+Y L+ K+ K + ++M+ + Y+ LI+ + +SG +AR VF
Sbjct: 452 IYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLS 511
Query: 71 -EMPVK-STFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACF 124
E VK N ++ G+ R G LD+AL + + + D +++T+I GY +
Sbjct: 512 VEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDM 571
Query: 125 ENAIKMFVDMVKDKVSPSQFTITNVLSS 152
AIK+F M K+K P+ T T++++
Sbjct: 572 ATAIKIFRYMEKNKCKPNVVTYTSLING 599
>AT2G02150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:547389-552229 REVERSE
Length = 1141
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 43/165 (26%)
Query: 31 KSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP----VKSTFSWNTILSG 86
K MI G +++ N +I+ K G + AR +F+EM V T ++N+++ G
Sbjct: 115 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 174
Query: 87 YARQGKLDKALHVFDEIPD---------------------------------------RD 107
+ + G+LD + F+E+ D +
Sbjct: 175 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 234
Query: 108 SVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSS 152
VS++T++ + + + AIK +VDM + + P+++T T+++ +
Sbjct: 235 VVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 279
>AT5G61400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24681550-24683514 FORWARD
Length = 654
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Query: 13 LYAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEM 72
++ L+ K++ L +S+ M+K G++ ++Y+ N LI+ + KSG +++A + EM
Sbjct: 306 VFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEM 365
Query: 73 P----VKSTFSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACF 124
F++ +++G + ++ +A +F ++ + S ++ ++I GY +
Sbjct: 366 ESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNM 425
Query: 125 ENAIKMFVDMVKDKVSPSQFTITNVLSSCAALR 157
E A+ + +M V P+ T + ++ +R
Sbjct: 426 EQALDLCSEMTASGVEPNIITFSTLIDGYCNVR 458
>AT3G22470.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:7966066-7967925 REVERSE
Length = 619
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
++ L+ +K L K ++ +MI G+ N+LI+ + K + +A +FD M
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377
Query: 74 VKST----FSWNTILSGYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFE 125
K +++ +++ Y + ++D + +F EI + +++++ T+++G+ Q
Sbjct: 378 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLN 437
Query: 126 NAIKMFVDMVKDKVSPSQFT 145
A ++F +MV V PS T
Sbjct: 438 AAKELFQEMVSRGVPPSVVT 457
>AT1G63630.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23587613-23588220 FORWARD
Length = 152
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 42 LNFSIYLT----NNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQGKL 93
L +SI+ T N++I+ + K + DA+ + D M K +++T+++GY + ++
Sbjct: 2 LRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRV 61
Query: 94 DKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
D + +F E+ R ++V++TT+I G+ Q+ + A + +M+ V+P T +
Sbjct: 62 DNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCM 121
Query: 150 LSSCAALRAL 159
L+ + + L
Sbjct: 122 LAGLCSKKEL 131
>AT1G74580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28020777-28023068 FORWARD
Length = 763
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 36 QMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKS----TFSWNTILSGYARQG 91
+M + GL + N L+N K G + DA + M K F++N ++ GY+ Q
Sbjct: 416 EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL 475
Query: 92 KLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTIT 147
K++ AL + D + D D ++ +++ G + + FE+ ++ + MV+ +P+ FT
Sbjct: 476 KMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFN 535
Query: 148 NVLSSCAALRALD 160
+L S R LD
Sbjct: 536 ILLESLCRYRKLD 548
>AT2G34370.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14510482-14511891 FORWARD
Length = 469
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 51 NLINLYAKSGYIVD-------------------ARNVFDEMPVKSTFSWNTILSGYARQG 91
+I++ GYIVD AR V D + S++T++ Y+
Sbjct: 98 EVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHDCITPLDARSYHTVIEMYSGCR 157
Query: 92 KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLS 151
D AL+VF+E+P R+S +W TMI + E AI MF +++ P + V
Sbjct: 158 STDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFF 217
Query: 152 SCAALRALDIG 162
+C ++ ++ G
Sbjct: 218 ACVSIGDINEG 228
>AT1G23450.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:8324698-8326697 FORWARD
Length = 666
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 18 LQTNLKSKNLSV------CKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDE 71
L T LK+ +LS+ C +H IK G + ++ +LI+ Y KSG +R VFDE
Sbjct: 420 LSTVLKALSLSLPESLHSCTLVHCCAIKSGYAADVAVSCSLIDAYTKSGQNEVSRKVFDE 479
Query: 72 MPVKSTFSWNTILSGYARQG------KLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFE 125
+ + F +I++GYAR G K+ + + + IPD V+ +++ G + E
Sbjct: 480 LDTPNIFCLTSIINGYARNGMGTDCVKMLREMDRMNLIPDE--VTILSVLSGCSHSGLVE 537
Query: 126 NAIKMFVDMVKDK--VSPSQ 143
++ D ++ K +SP +
Sbjct: 538 EG-ELIFDSLESKYGISPGR 556
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%)
Query: 63 VDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMA 122
+D + +E P ++ N + + G L A FDE+ RD V++ +I G ++
Sbjct: 32 MDFSSFLEENPSDLVYTHNRRIDELIKSGNLLSAHEAFDEMSVRDVVTYNLLISGNSRYG 91
Query: 123 CFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
C AI+++ +MV + S T +VLS C+ G ++H
Sbjct: 92 CSLRAIELYAEMVSCGLRESASTFPSVLSVCSDELFCREGIQVH 135
>AT5G50990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 6 plant
structures; EXPRESSED DURING: F mature embryo stage,
petal differentiation and expansion stage, D bilateral
stage, E expanded cotyledon stage; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is: binding
(TAIR:AT3G62890.1); Has 13116 Blast hits to 4886
proteins in 160 species: Archae - 0; Bacteria - 0;
Metazoa - 67; Fungi - 72; Plants - 12769; Viruses - 0;
Other Eukaryotes - 208 (source: NCBI BLink). |
chr5:20739453-20741281 FORWARD
Length = 534
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 26 NLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILS 85
+L K +H+ MI G+ + L++ L+++YAK G I +R VF + WN +++
Sbjct: 180 DLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMIT 239
Query: 86 GYARQGKLDKALHVFDEIPDR----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSP 141
G+A G +A+ VF E+ DS+++ ++ + E + F M +
Sbjct: 240 GFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSR----- 294
Query: 142 SQFTITNVLSSCAALRALDIGR 163
+F+I L A+ L +GR
Sbjct: 295 -RFSIQPKLEHYGAMVDL-LGR 314
>AT3G13160.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:4229994-4231178 REVERSE
Length = 394
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 52 LINLYAKSGYIVDARNVFDEMPV----KSTFSWNTILSGYARQGKLDKALHVFDEIPDR- 106
+INLY + G +A+ VFDEMP ++ S+N +L+ K D +F E+P +
Sbjct: 112 IINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKL 171
Query: 107 ----DSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVLSSCAALRALDIG 162
D S+ T+I G F A+ + ++ + P T +L + G
Sbjct: 172 SIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEG 231
Query: 163 RKI 165
+I
Sbjct: 232 EQI 234
>AT2G01510.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:230752-232506 REVERSE
Length = 584
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 81 NTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVS 140
N L + + G + A +F+E+ R+ VSW+TMIVGY A+ +F M + +
Sbjct: 249 NARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLR 308
Query: 141 PSQFTITNVLSSCAALRALDIGRK 164
P+ T VLS+C+ ++ G++
Sbjct: 309 PNYVTFLGVLSACSHAGLVNEGKR 332
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 31/153 (20%)
Query: 14 YAFLLQTNLKSKNLSVCKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMP 73
Y F+++ + + S ++HA ++K G + L+ +Y K G + A +F+ M
Sbjct: 112 YPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQ 171
Query: 74 VKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVD 133
VK D V+W + Q A++ F
Sbjct: 172 VK-------------------------------DLVAWNAFLAVCVQTGNSAIALEYFNK 200
Query: 134 MVKDKVSPSQFTITNVLSSCAALRALDIGRKIH 166
M D V FT+ ++LS+C L +L+IG +I+
Sbjct: 201 MCADAVQFDSFTVVSMLSACGQLGSLEIGEEIY 233
>AT3G06920.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:2181717-2184449 FORWARD
Length = 871
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 32 SIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFS----WNTILSGY 87
++ QM +LG +++L LI +AK G + A ++ DEM S + +N + +
Sbjct: 189 TLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248
Query: 88 ARQGKLDKALHVFDEIP----DRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQ 143
+ GK+D A F EI D V++T+MI + + A++MF + K++ P
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308
Query: 144 FTITNVL 150
+ ++
Sbjct: 309 YAYNTMI 315
>AT4G19220.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:10505266-10508121 REVERSE
Length = 932
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 32/144 (22%)
Query: 25 KNLSVCKSIHAQMIKLGLNFSIYLT--NNLINLYAKSGYIVDARNVFDEMPVKSTFSWNT 82
+ L++ +S+H +IK G + +++ N++I++Y+K G A VF+E+ + S N
Sbjct: 303 EELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRDVISSNA 362
Query: 83 ILSGYARQGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPS 142
IL+G+A G ++A + NQM DK+ P
Sbjct: 363 ILNGFAANGMFEEAFGIL------------------NQMQSV------------DKIQPD 392
Query: 143 QFTITNVLSSCAALRALDIGRKIH 166
T+ ++ S C L GR +H
Sbjct: 393 IATVVSITSICGDLSFSREGRAVH 416
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 56 YAKSGYIVDARNVFDEMPVKSTFSWNTILSGYARQGKLDKALHVFDEIPDRDSVSWTTMI 115
+++ G V V EM ++ N+++ Y + G +A +F RD VSW +MI
Sbjct: 408 FSREGRAVHGYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKTTTHRDLVSWNSMI 467
Query: 116 VGYNQMACFENAIKMFVDMVKDKVSPSQFTITNVL---SSCAALRALDIGRKIH 166
++Q A +F ++V + S S+F+++ VL +SC + +L G+ +H
Sbjct: 468 SAFSQNGFTHKAKNLFKEVVSE-YSCSKFSLSTVLAILTSCDSSDSLIFGKSVH 520
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 30 CKSIHAQMIKLGLNFSIYLTNNLINLYAKSGYIVDARNVFDEMPVKSTFSWNTILSGYAR 89
C +H I+ GL L N L+NLYAK + A VF M + SWNTI++
Sbjct: 207 CSMLHCLAIETGLVGDSSLCNALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLA 266
Query: 90 QGKLDKALHVFDEIPDRDSVSWTTMIVGYNQMACFENAIKMFVDMVKDKVSPSQFTITNV 149
G K+L F + G Q A D V T + V
Sbjct: 267 NGHPRKSLQYFKS------------MTGSGQEA--------------DTV-----TFSCV 295
Query: 150 LSSCAALRALDIGRKIH 166
+S+C+++ L +G +H
Sbjct: 296 ISACSSIEELTLGESLH 312