Jatropha Genome Database

JcCB0402451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0402451.20 - phase: 0 /partial/short
         (49 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74500.1 | Symbols:  | bHLH family protein | chr1:27998298-27...    87   2e-18
AT3G47710.1 | Symbols:  | bHLH family protein | chr3:17590729-17...    81   1e-16
AT1G26945.1 | Symbols: KDR | KDR (KIDARI); transcription regulat...    81   2e-16
AT3G28857.1 | Symbols:  | transcription regulator | chr3:1085578...    72   8e-14
AT5G39860.1 | Symbols: PRE1 | PRE1 (PACLOBUTRAZOL RESISTANCE1); ...    71   1e-13
AT5G15160.1 | Symbols:  | bHLH family protein | chr5:4921487-492...    67   2e-12

>AT1G74500.1 | Symbols:  | bHLH family protein |
          chr1:27998298-27998668 REVERSE
          Length = 93

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 47/49 (95%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 49
          VSAA+VLQ+TCNYIRNLHREVDDLSERLSELLA +DTAQAA+IR+LL Q
Sbjct: 45 VSAARVLQDTCNYIRNLHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93


>AT3G47710.1 | Symbols:  | bHLH family protein |
          chr3:17590729-17591455 FORWARD
          Length = 92

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 47/49 (95%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 49
          VSA++VLQETC+YIRNL +EVDDLSERLS+LL +TD+AQAA+IR+LLMQ
Sbjct: 44 VSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTDSAQAALIRSLLMQ 92


>AT1G26945.1 | Symbols: KDR | KDR (KIDARI); transcription
          regulator | chr1:9351571-9352474 FORWARD
          Length = 94

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 47/49 (95%), Gaps = 2/49 (4%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTD--TAQAAIIRNLL 47
          VSA+KVLQETCNYIRNLHREVDDLS+RLSELLA+TD  +A+AAIIR+LL
Sbjct: 44 VSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92


>AT3G28857.1 | Symbols:  | transcription regulator |
          chr3:10855781-10856313 REVERSE
          Length = 92

 Score = 71.6 bits (174), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%), Gaps = 2/50 (4%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATT--DTAQAAIIRNLLM 48
          VSA+KVLQETCNYIR LHREVD+LS+RLS+LL +   D+ +AA+IR+LLM
Sbjct: 43 VSASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92


>AT5G39860.1 | Symbols: PRE1 | PRE1 (PACLOBUTRAZOL RESISTANCE1);
          DNA binding / transcription factor |
          chr5:15957689-15958303 FORWARD
          Length = 92

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 44/49 (89%), Gaps = 2/49 (4%)

Query: 2  SAAKVLQETCNYIRNLHREVDDLSERLSELLATT--DTAQAAIIRNLLM 48
          SA+KVLQETCNYIRNL+REVD+LSERLS+LL +   D+ +AA+IR+LLM
Sbjct: 44 SASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92


>AT5G15160.1 | Symbols:  | bHLH family protein |
          chr5:4921487-4922553 REVERSE
          Length = 94

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 43/49 (87%), Gaps = 2/49 (4%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTD--TAQAAIIRNLL 47
          VSA+KVLQETCNYIRNL++E DDLS+RL++LL + D  + QAA+IR+L+
Sbjct: 44 VSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIRSLI 92