Jatropha Genome Database

JcCB0400811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0400811.10 - phase: 0 
         (231 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18070.1 | Symbols: DRT101 | DRT101 (DNA-DAMAGE-REPAIR/TOLERA...   301   2e-82

>AT5G18070.1 | Symbols: DRT101 | DRT101
           (DNA-DAMAGE-REPAIR/TOLERATION 101); intramolecular
           transferase, phosphotransferases / magnesium ion binding
           | chr5:5981117-5982787 FORWARD
          Length = 556

 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/233 (64%), Positives = 188/233 (80%), Gaps = 2/233 (0%)

Query: 1   MNDRQKSFILYSSTNFPLPQGVRLSYGTAGFRADASILQSTVFRVGILAALRSLKTQS-V 59
           M++ Q + IL SS  FP+PQGV+LSYGTAGFR DA +L+STV+RVGIL+ALRSLK  S  
Sbjct: 1   MDEIQIASILKSSELFPIPQGVKLSYGTAGFRGDAKLLESTVYRVGILSALRSLKLGSAT 60

Query: 60  IGLMITASHNKVSDNGVKVADPSGGMLIQDWEPFADAIANAATPINLVQLIDEFVKKENI 119
           +GLMITASHNKVSDNG+KV+DPSG ML Q+WEPFAD IANA++P  LV LI +F++KE I
Sbjct: 61  VGLMITASHNKVSDNGIKVSDPSGFMLSQEWEPFADQIANASSPEELVSLIRKFMEKEEI 120

Query: 120 -LFDGARSAEVLLGRDTRPSGLFLIEAAKQGVNSIVGALALDMGILTTPQLHWMVRARNK 178
            + +  + AEV LGRDTRPSG  L+ A + GV SI+G++A+D+GILTTPQLHWMVRA+NK
Sbjct: 121 AIGENNKGAEVWLGRDTRPSGESLLRAGEIGVGSILGSVAIDIGILTTPQLHWMVRAKNK 180

Query: 179 GMKATEDDYYEQLSSSFRCLTDLIPNGHKINEVDDRLVVDGANGVGAEKIQVL 231
           G+KATE+DY+E LS+SFRCL DLIP+         +L+VDGANGVG +KI+ L
Sbjct: 181 GLKATENDYFENLSTSFRCLIDLIPSSGNDKLEISKLLVDGANGVGGQKIEKL 233