Jatropha Genome Database

JcCB0399861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399861.10 - phase: 1 /partial
         (113 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47860.1 | Symbols:  | unknown protein | chr5:19381656-193843...   127   1e-30

>AT5G47860.1 | Symbols:  | unknown protein | chr5:19381656-19384310
           FORWARD
          Length = 431

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 77/93 (82%)

Query: 21  IYCNYDETARKSNQSSSSGIQLYGQIERLLTETVRQSQDAWGGSKDWIEVEGAWVLKPRI 80
           ++C+  E     +++ S+GIQ+YG+IERLLTETV+ SQ + GGS DW EVEGAWVLKPR 
Sbjct: 43  VFCSSKENDINRDRNQSTGIQVYGEIERLLTETVKNSQSSSGGSSDWSEVEGAWVLKPRN 102

Query: 81  SRPKSVVHFVGGIFVGAAPQLTYRLFLERLVEK 113
           S+PK VVHF+GGIFVGAAPQLTYRLFLERL EK
Sbjct: 103 SKPKMVVHFIGGIFVGAAPQLTYRLFLERLAEK 135