Jatropha Genome Database

JcCB0399111.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399111.10 + phase: 0 
         (91 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28857.1 | Symbols:  | transcription regulator | chr3:1085578...   136   2e-33
AT5G39860.1 | Symbols: PRE1 | PRE1 (PACLOBUTRAZOL RESISTANCE1); ...   125   7e-30
AT1G26945.1 | Symbols: KDR | KDR (KIDARI); transcription regulat...   113   2e-26
AT5G15160.1 | Symbols:  | bHLH family protein | chr5:4921487-492...   108   5e-25
AT1G74500.1 | Symbols:  | bHLH family protein | chr1:27998298-27...   104   1e-23
AT3G47710.1 | Symbols:  | bHLH family protein | chr3:17590729-17...   100   2e-22

>AT3G28857.1 | Symbols:  | transcription regulator |
          chr3:10855781-10856313 REVERSE
          Length = 92

 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 83/92 (90%), Gaps = 1/92 (1%)

Query: 1  MSSRRPRQSASVPRISDEQIIELISKLRQLLPEIRDRR-SDKVSASKVLQETCNYIRNLH 59
          MS+RR RQ+++  RISD+Q+I+L+SKLRQ LPEI +RR SDKVSASKVLQETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 60 REVDDLSERLSQLLTTIDADSPEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92


>AT5G39860.1 | Symbols: PRE1 | PRE1 (PACLOBUTRAZOL RESISTANCE1);
          DNA binding / transcription factor |
          chr5:15957689-15958303 FORWARD
          Length = 92

 Score =  125 bits (313), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 73/81 (90%), Gaps = 1/81 (1%)

Query: 12 VPRISDEQIIELISKLRQLLPEIRDRR-SDKVSASKVLQETCNYIRNLHREVDDLSERLS 70
           PRISD Q+I+L+SKLRQ+LPEI  RR SDK SASKVLQETCNYIRNL+REVD+LSERLS
Sbjct: 12 APRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLS 71

Query: 71 QLLTTIDADSPEAAIIRSLIM 91
          QLL ++D DSPEAA+IRSL+M
Sbjct: 72 QLLESVDEDSPEAAVIRSLLM 92


>AT1G26945.1 | Symbols: KDR | KDR (KIDARI); transcription
          regulator | chr1:9351571-9352474 FORWARD
          Length = 94

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 67/74 (90%)

Query: 17 DEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLTTI 76
          D+QI +L+SKL+ L+PE+R RRSDKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL + 
Sbjct: 19 DDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLAST 78

Query: 77 DADSPEAAIIRSLI 90
          D +S EAAIIRSL+
Sbjct: 79 DDNSAEAAIIRSLL 92


>AT5G15160.1 | Symbols:  | bHLH family protein |
          chr5:4921487-4922553 REVERSE
          Length = 94

 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 68/75 (90%), Gaps = 1/75 (1%)

Query: 17 DEQIIELISKLRQLLPEIR-DRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLTT 75
          D+QI +LISKLRQ +PEIR +RRS+ VSASKVLQETCNYIRNL++E DDLS+RL+QLL +
Sbjct: 18 DDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLES 77

Query: 76 IDADSPEAAIIRSLI 90
          ID +SP+AA+IRSLI
Sbjct: 78 IDPNSPQAAVIRSLI 92


>AT1G74500.1 | Symbols:  | bHLH family protein |
          chr1:27998298-27998668 REVERSE
          Length = 93

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 70/77 (90%), Gaps = 3/77 (3%)

Query: 15 ISDEQIIELISKLRQLLPEIRD-RRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLL 73
          IS++QI +LI KL+QLLPE+RD RRSDKVSA++VLQ+TCNYIRNLHREVDDLSERLS+LL
Sbjct: 17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76

Query: 74 TTIDADSPEAAIIRSLI 90
             ++D+ +AA+IRSL+
Sbjct: 77 A--NSDTAQAALIRSLL 91


>AT3G47710.1 | Symbols:  | bHLH family protein |
          chr3:17590729-17591455 FORWARD
          Length = 92

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 73/93 (78%), Gaps = 4/93 (4%)

Query: 1  MSSRRPR-QSASVPRISDEQIIELISKLRQLLPEI-RDRRSDKVSASKVLQETCNYIRNL 58
          MSSR+ R +      I+DEQI +L+ +L +LLPE+  +RRS KVSAS+VLQETC+YIRNL
Sbjct: 1  MSSRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNL 60

Query: 59 HREVDDLSERLSQLLTTIDADSPEAAIIRSLIM 91
           +EVDDLSERLSQLL +   DS +AA+IRSL+M
Sbjct: 61 SKEVDDLSERLSQLLES--TDSAQAALIRSLLM 91