Jatropha Genome Database

JcCB0398871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398871.10 + phase: 2 /partial
         (53 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42740.1 | Symbols:  | glucose-6-phosphate isomerase, cytosol...    89   6e-19

>AT5G42740.1 | Symbols:  | glucose-6-phosphate isomerase, cytosolic
           (PGIC) | chr5:17136080-17140622 FORWARD
          Length = 560

 Score = 89.0 bits (219), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/44 (88%), Positives = 42/44 (95%)

Query: 10  AVCSAVGVLPLSLQYGFSIVEKFLKGASSIDQHFSSAPFEKNVP 53
           +VCSAVGVLPLSLQYGFS+VEKFLKGASSIDQHF S PFEKN+P
Sbjct: 277 SVCSAVGVLPLSLQYGFSMVEKFLKGASSIDQHFQSTPFEKNIP 320