Jatropha Genome Database

JcCB0398861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398861.10 + phase: 1 /partial
         (185 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42740.1 | Symbols:  | glucose-6-phosphate isomerase, cytosol...   303   4e-83

>AT5G42740.1 | Symbols:  | glucose-6-phosphate isomerase, cytosolic
           (PGIC) | chr5:17136080-17140622 FORWARD
          Length = 560

 Score =  303 bits (776), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 161/173 (93%)

Query: 1   EPGTNGQHSFYQLIHQGRIIPCDFIGVVKSQQPVYLEGEVVNNHDELMSNFFAQPDALAY 60
           EPGTNGQHSFYQLIHQGR+IPCDFIG+VKSQQPVYL+GEVV+NHDELMSNFFAQPDALAY
Sbjct: 385 EPGTNGQHSFYQLIHQGRVIPCDFIGIVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAY 444

Query: 61  GKTAEQLQKENVPQNLIPHKTFSGNRPSLSILLSALDAYKIGQLLAIYEHRVVVQGFIWG 120
           GKT EQLQKENV +NLIPHKTFSGNRPSLS+LL  L AY +GQLLAIYEHRV VQGF+WG
Sbjct: 445 GKTPEQLQKENVSENLIPHKTFSGNRPSLSLLLPELTAYNVGQLLAIYEHRVAVQGFVWG 504

Query: 121 INSFDQWGVELGKSLATQVRKQLHASRTKGEPVEGFNFSTTSLLKRYLEESSD 173
           INSFDQWGVELGK LATQVRKQLH+SRT+G   EGFN+STT+LLKRYLE SS+
Sbjct: 505 INSFDQWGVELGKVLATQVRKQLHSSRTQGTAPEGFNYSTTTLLKRYLETSSE 557