Jatropha Genome Database
- JcCB0398801.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0398801.10 + phase: 0
(172 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04730.1 | Symbols: IAA16 | IAA16; transcription factor | chr... 144 2e-35
AT1G04250.1 | Symbols: AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); t... 139 6e-34
AT4G14550.1 | Symbols: IAA14, SLR | IAA14 (INDOLE-3-ACETIC ACID ... 137 4e-33
AT3G23050.1 | Symbols: IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7... 136 5e-33
AT3G23050.2 | Symbols: IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7... 136 8e-33
AT2G22670.2 | Symbols: IAA8 | IAA8; transcription factor | chr2:... 103 8e-23
AT2G22670.3 | Symbols: IAA8 | IAA8; transcription factor | chr2:... 102 8e-23
AT2G22670.1 | Symbols: IAA8 | IAA8; transcription factor | chr2:... 102 8e-23
AT4G29080.1 | Symbols: PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATE... 102 1e-22
AT5G65670.1 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIB... 99 1e-21
AT5G65670.2 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIB... 99 1e-21
AT1G04240.1 | Symbols: SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2); tr... 84 4e-17
AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCI... 82 2e-16
AT3G23030.1 | Symbols: IAA2 | IAA2 (INDOLE-3-ACETIC ACID INDUCIB... 77 4e-15
AT4G14560.1 | Symbols: IAA1, AXR5 | IAA1 (INDOLE-3-ACETIC ACID I... 71 4e-13
AT1G15580.1 | Symbols: IAA5, ATAUX2-27, AUX2-27 | IAA5 (INDOLE-3... 69 2e-12
AT1G52830.1 | Symbols: IAA6, SHY1 | IAA6 (INDOLE-3-ACETIC ACID 6... 67 4e-12
AT3G15540.1 | Symbols: IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID... 65 1e-11
AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATE... 65 2e-11
AT4G28640.1 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUC... 63 1e-10
AT4G28640.2 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUC... 62 2e-10
AT1G80390.1 | Symbols: IAA15 | IAA15 (INDOLE-3-ACETIC ACID INDUC... 58 3e-09
AT1G04550.1 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN... 58 3e-09
AT1G04550.2 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN... 58 4e-09
AT2G33310.3 | Symbols: IAA13 | IAA13; transcription factor | chr... 57 8e-09
AT2G33310.1 | Symbols: IAA13 | IAA13; transcription factor | chr... 57 8e-09
AT1G51950.1 | Symbols: IAA18 | IAA18 (INDOLE-3-ACETIC ACID INDUC... 56 1e-08
AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID... 56 1e-08
AT2G33310.2 | Symbols: IAA13 | IAA13; transcription factor | chr... 53 8e-08
>AT3G04730.1 | Symbols: IAA16 | IAA16; transcription factor |
chr3:1288993-1290415 REVERSE
Length = 236
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 95/144 (65%), Gaps = 14/144 (9%)
Query: 39 QIAKINNGKRGFSETVDLKLNLSTXXXXXXXXXXXXTDVPSSNDPA-KPPAKAQVVGWPP 97
++A NNGKRGFSETVDLKLNLS+ D+ + + KPPAKAQVVGWPP
Sbjct: 21 EMAGKNNGKRGFSETVDLKLNLSSTAMDSVSK----VDLENMKEKVVKPPAKAQVVGWPP 76
Query: 98 IRSFRKNVMSVQK-SNGDEAE--------KXXXXXXXXXXXXXFVKVSMDGAPYLRKVDL 148
+RSFRKNVMS QK + GD E +VKVSMDGAPYLRK+DL
Sbjct: 77 VRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDL 136
Query: 149 KLYKSYQELSDALGKMFSSFTIGN 172
KLYK+YQ+LS+AL KMFSSFTIGN
Sbjct: 137 KLYKTYQDLSNALSKMFSSFTIGN 160
>AT1G04250.1 | Symbols: AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3);
transcription factor | chr1:1136382-1138340 FORWARD
Length = 229
Score = 139 bits (351), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 90/144 (62%), Gaps = 24/144 (16%)
Query: 38 DQIAKINNGKRGFSETVDLKLNL---------STXXXXXXXXXXXXTDVPSSNDPAKPPA 88
D +A + KRGFSETVDLKLNL ST + P DPAKPPA
Sbjct: 22 DTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSKEKSACP--KDPAKPPA 79
Query: 89 KAQVVGWPPIRSFRKNVM-SVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLRKVD 147
KAQVVGWPP+RS+RKNVM S QKS+G FVKVSMDGAPYLRK+D
Sbjct: 80 KAQVVGWPPVRSYRKNVMVSCQKSSG------------GPEAAAFVKVSMDGAPYLRKID 127
Query: 148 LKLYKSYQELSDALGKMFSSFTIG 171
L++YKSY ELS+AL MFSSFT+G
Sbjct: 128 LRMYKSYDELSNALSNMFSSFTMG 151
>AT4G14550.1 | Symbols: IAA14, SLR | IAA14 (INDOLE-3-ACETIC ACID
INDUCIBLE 14); protein binding / transcription factor/
transcription repressor | chr4:8348521-8349923 REVERSE
Length = 228
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 88/128 (68%), Gaps = 7/128 (5%)
Query: 47 KRGFSETVDLKLNLSTXXXXXXXXXXXXTDVPSS--NDPAKPPAKAQVVGWPPIRSFRKN 104
KRGFSETVDLKLNL + + DP+KPPAKAQVVGWPP+R++RKN
Sbjct: 30 KRGFSETVDLKLNLQSNKQGHVDLNTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKN 89
Query: 105 VMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKM 164
VM+ QKS EAE+ FVKVSMDGAPYLRKVDLK+Y SY++LSDAL KM
Sbjct: 90 VMANQKSG--EAEEAMSSGGGTVA---FVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKM 144
Query: 165 FSSFTIGN 172
FSSFT+G+
Sbjct: 145 FSSFTMGS 152
>AT3G23050.1 | Symbols: IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7);
transcription factor | chr3:8194768-8196716 FORWARD
Length = 243
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 89/133 (66%), Gaps = 8/133 (6%)
Query: 47 KRGFSETVDLKLNLSTXXXXXXXXXXXXTDVPSSN----DPAKPPAKAQVVGWPPIRSFR 102
KRGFSETVDL LNL + + VP DP+KPPAKAQVVGWPP+R++R
Sbjct: 35 KRGFSETVDLMLNLQSNKEGSVDLKNV-SAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYR 93
Query: 103 KNVMSVQK--SNGDEAE-KXXXXXXXXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSD 159
KN+M+ QK S +EA + VKVSMDGAPYLRKVDLK+YKSYQ+LSD
Sbjct: 94 KNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSD 153
Query: 160 ALGKMFSSFTIGN 172
AL KMFSSFT+GN
Sbjct: 154 ALAKMFSSFTMGN 166
>AT3G23050.2 | Symbols: IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7);
transcription factor | chr3:8194768-8196214 FORWARD
Length = 210
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 88/133 (66%), Gaps = 8/133 (6%)
Query: 47 KRGFSETVDLKLNLSTXXXXXXXXXXXXTDVPSSN----DPAKPPAKAQVVGWPPIRSFR 102
KRGFSETVDL LNL + VP DP+KPPAKAQVVGWPP+R++R
Sbjct: 35 KRGFSETVDLMLNLQSNKEGSVDLKNVSA-VPKEKTTLKDPSKPPAKAQVVGWPPVRNYR 93
Query: 103 KNVMSVQK--SNGDEAE-KXXXXXXXXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSD 159
KN+M+ QK S +EA + VKVSMDGAPYLRKVDLK+YKSYQ+LSD
Sbjct: 94 KNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSD 153
Query: 160 ALGKMFSSFTIGN 172
AL KMFSSFT+GN
Sbjct: 154 ALAKMFSSFTMGN 166
>AT2G22670.2 | Symbols: IAA8 | IAA8; transcription factor |
chr2:9637136-9638459 FORWARD
Length = 319
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 60/87 (68%), Gaps = 7/87 (8%)
Query: 86 PPAKAQVVGWPPIRSFRKNVMSVQKS-NGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLR 144
P AKAQVVGWPPIRS+RKN M+ S N DE + FVKVSMDGAPYLR
Sbjct: 160 PAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVD------GKPGLGVLFVKVSMDGAPYLR 213
Query: 145 KVDLKLYKSYQELSDALGKMFSSFTIG 171
KVDL+ Y SYQ+LS AL KMFS FT+G
Sbjct: 214 KVDLRTYTSYQQLSSALEKMFSCFTLG 240
>AT2G22670.3 | Symbols: IAA8 | IAA8; transcription factor |
chr2:9637136-9638459 FORWARD
Length = 321
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 60/87 (68%), Gaps = 7/87 (8%)
Query: 86 PPAKAQVVGWPPIRSFRKNVMSVQKS-NGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLR 144
P AKAQVVGWPPIRS+RKN M+ S N DE + FVKVSMDGAPYLR
Sbjct: 160 PAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVD------GKPGLGVLFVKVSMDGAPYLR 213
Query: 145 KVDLKLYKSYQELSDALGKMFSSFTIG 171
KVDL+ Y SYQ+LS AL KMFS FT+G
Sbjct: 214 KVDLRTYTSYQQLSSALEKMFSCFTLG 240
>AT2G22670.1 | Symbols: IAA8 | IAA8; transcription factor |
chr2:9637136-9638459 FORWARD
Length = 321
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 60/87 (68%), Gaps = 7/87 (8%)
Query: 86 PPAKAQVVGWPPIRSFRKNVMSVQKS-NGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLR 144
P AKAQVVGWPPIRS+RKN M+ S N DE + FVKVSMDGAPYLR
Sbjct: 160 PAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVD------GKPGLGVLFVKVSMDGAPYLR 213
Query: 145 KVDLKLYKSYQELSDALGKMFSSFTIG 171
KVDL+ Y SYQ+LS AL KMFS FT+G
Sbjct: 214 KVDLRTYTSYQQLSSALEKMFSCFTLG 240
>AT4G29080.1 | Symbols: PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATED
PROTEIN 2); transcription factor |
chr4:14323665-14325213 REVERSE
Length = 305
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 61/90 (67%), Gaps = 5/90 (5%)
Query: 86 PPAKAQVVGWPPIRSFRKNVMSVQKS----NGDEAEKXXXXXXXXXXXXXFVKVSMDGAP 141
P +KAQVVGWPPIRSFRKN M+ +S N E E+ +VKVSM+GAP
Sbjct: 138 PASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCL-YVKVSMEGAP 196
Query: 142 YLRKVDLKLYKSYQELSDALGKMFSSFTIG 171
YLRK+DLK YKSY ELS AL KMFS FTIG
Sbjct: 197 YLRKIDLKTYKSYLELSSALEKMFSCFTIG 226
>AT5G65670.1 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE
9); transcription factor | chr5:26254463-26256134
FORWARD
Length = 338
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 6/84 (7%)
Query: 88 AKAQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLRKVD 147
AKAQ+VGWPP+RS+RKN ++ N DE + FVKVSMDGAPYLRKVD
Sbjct: 180 AKAQIVGWPPVRSYRKNTLATTCKNSDEVD------GRPGSGALFVKVSMDGAPYLRKVD 233
Query: 148 LKLYKSYQELSDALGKMFSSFTIG 171
L+ Y +Y ELS AL KMF++FT+G
Sbjct: 234 LRSYTNYGELSSALEKMFTTFTLG 257
>AT5G65670.2 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE
9); transcription factor | chr5:26254463-26256134
FORWARD
Length = 336
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 6/84 (7%)
Query: 88 AKAQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLRKVD 147
AKAQ+VGWPP+RS+RKN ++ N DE + FVKVSMDGAPYLRKVD
Sbjct: 180 AKAQIVGWPPVRSYRKNTLATTCKNSDEVD------GRPGSGALFVKVSMDGAPYLRKVD 233
Query: 148 LKLYKSYQELSDALGKMFSSFTIG 171
L+ Y +Y ELS AL KMF++FT+G
Sbjct: 234 LRSYTNYGELSSALEKMFTTFTLG 257
>AT1G04240.1 | Symbols: SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2);
transcription factor | chr1:1128564-1129319 REVERSE
Length = 189
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 12/86 (13%)
Query: 86 PPAKAQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLRK 145
PP KAQ+VGWPP+RS+RKN + +K N E E +VKVSMDGAPYLRK
Sbjct: 59 PPRKAQIVGWPPVRSYRKNNIQSKK-NESEHE----------GQGIYVKVSMDGAPYLRK 107
Query: 146 VDLKLYKSYQELSDALGKMFSSFTIG 171
+DL YK Y EL AL MF F++G
Sbjct: 108 IDLSCYKGYSELLKALEVMF-KFSVG 132
>AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCIBLE
2-11); DNA binding / transcription factor |
chr5:17550465-17551206 FORWARD
Length = 186
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 15/92 (16%)
Query: 81 NDPAKPPAKAQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGA 140
+ A PP KAQ+VGWPP+RS+RKN + +KS + +VKVSMDGA
Sbjct: 53 TETASPP-KAQIVGWPPVRSYRKNNVQTKKSESE-------------GQGNYVKVSMDGA 98
Query: 141 PYLRKVDLKLYKSYQELSDALGKMFSSFTIGN 172
PYLRK+DL +YK Y EL +L MF F++G
Sbjct: 99 PYLRKIDLTMYKQYPELMKSLENMF-KFSVGE 129
>AT3G23030.1 | Symbols: IAA2 | IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE
2); transcription factor | chr3:8181069-8181685 REVERSE
Length = 174
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 48/84 (57%), Gaps = 22/84 (26%)
Query: 82 DPAKPPAKAQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAP 141
+ + PP K Q+VGWPP+RS RKN SV +VKVSMDGAP
Sbjct: 51 EESTPPTKTQIVGWPPVRSSRKNNNSVS----------------------YVKVSMDGAP 88
Query: 142 YLRKVDLKLYKSYQELSDALGKMF 165
YLRK+DLK YK+Y EL AL MF
Sbjct: 89 YLRKIDLKTYKNYPELLKALENMF 112
>AT4G14560.1 | Symbols: IAA1, AXR5 | IAA1 (INDOLE-3-ACETIC ACID
INDUCIBLE); protein binding / transcription factor |
chr4:8361182-8361780 FORWARD
Length = 168
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 21/93 (22%)
Query: 79 SSNDPAKPPAKAQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMD 138
S+ + A PPAK Q+VGWPP+RS RKN + S +VKVSMD
Sbjct: 43 STEESAPPPAKTQIVGWPPVRSNRKNNNNKNVS--------------------YVKVSMD 82
Query: 139 GAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 171
GAPYLRK+DLK+YK+Y EL AL MF FT+G
Sbjct: 83 GAPYLRKIDLKMYKNYPELLKALENMF-KFTVG 114
>AT1G15580.1 | Symbols: IAA5, ATAUX2-27, AUX2-27 | IAA5
(INDOLE-3-ACETIC ACID INDUCIBLE 5); transcription factor
| chr1:5365764-5366460 REVERSE
Length = 163
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 20/86 (23%)
Query: 84 AKPPAKAQVVGWPPIRSFR-KNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAPY 142
+P K+QVVGWPP+ S+R KN + KS+ +VKVS+DGA +
Sbjct: 46 CEPAKKSQVVGWPPVCSYRRKNSLERTKSS-------------------YVKVSVDGAAF 86
Query: 143 LRKVDLKLYKSYQELSDALGKMFSSF 168
LRK+DL++YK YQ+L+ AL +F +
Sbjct: 87 LRKIDLEMYKCYQDLASALQILFGCY 112
>AT1G52830.1 | Symbols: IAA6, SHY1 | IAA6 (INDOLE-3-ACETIC ACID 6);
transcription factor | chr1:19672670-19673559 REVERSE
Length = 189
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 77 VPSSNDPAKPPAKAQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVS 136
V S D + P K+Q VGWPP+ S+R+ K N +EA K +VKVS
Sbjct: 56 VSSVEDESLPVVKSQAVGWPPVCSYRR------KKNNEEASKAIG----------YVKVS 99
Query: 137 MDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 171
MDG PY+RK+DL SY L L +F IG
Sbjct: 100 MDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIG 134
>AT3G15540.1 | Symbols: IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID
INDUCIBLE 19); transcription factor |
chr3:5264100-5265378 FORWARD
Length = 197
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 77 VPSSNDPAK----PPAKAQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXF 132
V S D K P AK+QVVGWPP+ S+RK K++ EA +
Sbjct: 52 VSSGGDAEKVNDSPAAKSQVVGWPPVCSYRK------KNSCKEA-------STTKVGLGY 98
Query: 133 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 171
VKVSMDG PYLRK+DL + Y +L+ AL K+F IG
Sbjct: 99 VKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLFGFRGIG 137
>AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED
PROTEIN 1); transcription factor | chr3:5612801-5614208
REVERSE
Length = 269
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 85 KPPAKAQVVGWPPIRSFRKNVMSV-------QKSNGDEAEKX--XXXXXXXXXXXXFVKV 135
K A VVGWPP+RSFRKN+ S + S+G + K FVK+
Sbjct: 97 KRTAPGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKI 156
Query: 136 SMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF 168
+MDG P RKVDL Y SY++LS + K+F
Sbjct: 157 NMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGL 189
>AT4G28640.1 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID
INDUCIBLE 11); transcription factor |
chr4:14142288-14143755 FORWARD
Length = 246
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 90 AQVVGWPPIRSFRKNVMSVQ-KSNGDE--------AEKXXXXXXXXXXXXXFVKVSMDGA 140
QVVGWPPIR++R N M Q K++ E A FVKV+MDG
Sbjct: 87 GQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGI 146
Query: 141 PYLRKVDLKLYKSYQELSDALGKMF 165
P RK+DL +K Y+ LS+ L +MF
Sbjct: 147 PIGRKIDLNAHKCYESLSNTLEEMF 171
>AT4G28640.2 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID
INDUCIBLE 11); transcription factor |
chr4:14142288-14143928 FORWARD
Length = 302
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 90 AQVVGWPPIRSFRKNVMSVQ-KSNGDE--------AEKXXXXXXXXXXXXXFVKVSMDGA 140
QVVGWPPIR++R N M Q K++ E A FVKV+MDG
Sbjct: 87 GQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGI 146
Query: 141 PYLRKVDLKLYKSYQELSDALGKMF 165
P RK+DL +K Y+ LS+ L +MF
Sbjct: 147 PIGRKIDLNAHKCYESLSNTLEEMF 171
>AT1G80390.1 | Symbols: IAA15 | IAA15 (INDOLE-3-ACETIC ACID
INDUCIBLE 15); transcription factor |
chr1:30221780-30222702 REVERSE
Length = 179
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 51/122 (41%), Gaps = 39/122 (31%)
Query: 47 KRGFSETVDLKLNLSTXXXXXXXXXXXXTDVPSSNDPAKPPAKAQVVGWPPIRSFRKNVM 106
KR F ETVDLKL + +N + Q+VGWPP+ + RK V
Sbjct: 42 KRRFLETVDLKLG----------------EAHENNYISSMVTNDQLVGWPPVATARKTV- 84
Query: 107 SVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFS 166
+VKV++DGA YLRKVDL +Y Y +L AL MF
Sbjct: 85 ----------------------RRKYVKVALDGAAYLRKVDLGMYDCYGQLFTALENMFQ 122
Query: 167 SF 168
Sbjct: 123 GI 124
>AT1G04550.1 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN
12); transcription factor/ transcription repressor |
chr1:1240582-1241375 FORWARD
Length = 173
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 79 SSNDPAKPPAKAQVVGWPPIRSFRKNVM---------SVQKSNG-------DEAEKXXXX 122
SS+ A PP +QVVGWPPI R N + ++ +G DE +
Sbjct: 57 SSHQGASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMK 116
Query: 123 XXXXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT 169
FVKV+MDG RKVD++ + SY+ L+ L +MF T
Sbjct: 117 VNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMT 163
>AT1G04550.2 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN
12); transcription factor/ transcription repressor |
chr1:1240582-1241810 FORWARD
Length = 239
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 79 SSNDPAKPPAKAQVVGWPPIRSFRKNVM---------SVQKSNG-------DEAEKXXXX 122
SS+ A PP +QVVGWPPI R N + ++ +G DE +
Sbjct: 57 SSHQGASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMK 116
Query: 123 XXXXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT 169
FVKV+MDG RKVD++ + SY+ L+ L +MF T
Sbjct: 117 VNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMT 163
>AT2G33310.3 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 246
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 79 SSNDPAKPPAKAQVVGWPPIRSFRKNVM---SVQKSNGDEAE-----------KXXXXXX 124
+S+ + PP +QVVGWPPI S R N + KS +E E K
Sbjct: 63 ASHAGSSPPRSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKV 122
Query: 125 XXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF 165
F+KV+MDG RKVDL + SY+ L+ L MF
Sbjct: 123 NGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMF 163
>AT2G33310.1 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 246
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 79 SSNDPAKPPAKAQVVGWPPIRSFRKNVM---SVQKSNGDEAE-----------KXXXXXX 124
+S+ + PP +QVVGWPPI S R N + KS +E E K
Sbjct: 63 ASHAGSSPPRSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKV 122
Query: 125 XXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF 165
F+KV+MDG RKVDL + SY+ L+ L MF
Sbjct: 123 NGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMF 163
>AT1G51950.1 | Symbols: IAA18 | IAA18 (INDOLE-3-ACETIC ACID
INDUCIBLE 18); transcription factor |
chr1:19305670-19307130 FORWARD
Length = 267
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 88 AKAQVVGWPPIRSFRKNVMS---------VQKSNG-----DEAEKXXXXXXXXXXXXXFV 133
A VVGWPP+RSFRKN+ S SNG + + FV
Sbjct: 93 APGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFV 152
Query: 134 KVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF 168
K++M G P RKVDL + SY++LS + K+F
Sbjct: 153 KINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGL 187
>AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID
INDUCIBLE 28); transcription factor |
chr5:9033480-9034554 FORWARD
Length = 175
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 90 AQVVGWPPIRSFRKNVMSVQKSNGDEAEKXXXXXXXXXXXXXFVKVSMDGAPYLRKVDLK 149
A VVGWPP+RS R+N+ + + ++ +VK++M+G P RKV+L
Sbjct: 47 APVVGWPPVRSSRRNLTA-------QLKEEMKKKESDEEKELYVKINMEGVPIGRKVNLS 99
Query: 150 LYKSYQELSDALGKMFS 166
Y +YQ+LS A+ ++FS
Sbjct: 100 AYNNYQQLSHAVDQLFS 116
>AT2G33310.2 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 247
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 76 DVPSSNDPAKPPAKAQVVGWPPIRSFRKNVM---SVQKSNGDEAE-----------KXXX 121
D S + P + +QVVGWPPI S R N + KS +E E K
Sbjct: 61 DSASHAGSSPPRSSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVT 120
Query: 122 XXXXXXXXXXFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF 165
F+KV+MDG RKVDL + SY+ L+ L MF
Sbjct: 121 KKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMF 164