Jatropha Genome Database

JcCB0398651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398651.10 + phase: 0 
         (149 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32583.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   154   1e-38
AT4G24972.1 | Symbols: TPD1 | TPD1 (TAPETUM DETERMINANT 1) | chr...   151   2e-37
AT1G05835.1 | Symbols:  | unknown protein | chr1:1762248-1762702...    47   5e-06

>AT1G32583.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; BEST Arabidopsis thaliana protein
           match is: TPD1 (TAPETUM DETERMINANT 1)
           (TAIR:AT4G24972.1); Has 78 Blast hits to 76 proteins in
           9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:11787351-11788103 FORWARD
          Length = 179

 Score =  154 bits (390), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 93/117 (79%), Gaps = 1/117 (0%)

Query: 32  LLCTALAMEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISGIHL 91
           LL +    +  NRI G+ C+K DIV+ QG T PLPSG+P+YTVEI N CV+ C+I+ IH+
Sbjct: 63  LLLSPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHV 121

Query: 92  TCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLSVSSVIC 148
           +CGWFSS RL+NP++F+RL Y+DCLVNDG+PL  G +LSF+YAN+F YPLSV+SV C
Sbjct: 122 SCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178


>AT4G24972.1 | Symbols: TPD1 | TPD1 (TAPETUM DETERMINANT 1) |
           chr4:12838220-12839619 FORWARD
          Length = 176

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 85/109 (77%), Gaps = 1/109 (0%)

Query: 41  EPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISGIHLTCGWFSSAR 100
           EP RI GEKC   DIV+NQ  T P+P+GIP Y VEI N C++GC IS IH+ CGWFSSA+
Sbjct: 69  EPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAK 127

Query: 101 LINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLSVSSVICS 149
           LINP++FKR+ Y+DCLVN+GKPL  G TLSF YANTF Y LSV+ V C+
Sbjct: 128 LINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176


>AT1G05835.1 | Symbols:  | unknown protein | chr1:1762248-1762702
           FORWARD
          Length = 127

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 72  YTVEIMNVCVTGCDISGIHLTCGWFSSARLINPKIFKRLRYN--DCLVNDGKPLVNGGTL 129
           + VE+MN C   C I  + L C  F  + L++P   + L  +  +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 105

Query: 130 SFEYANTFHYPL 141
           SF Y+NT  + L
Sbjct: 106 SFNYSNTHQFAL 117