Jatropha Genome Database

JcCB0397691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0397691.10 - phase: 1 /partial
         (232 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36390.1 | Symbols: SBE2.1, BE3 | SBE2.1 (starch branching en...   294   3e-80
AT5G03650.1 | Symbols: SBE2.2 | SBE2.2 (starch branching enzyme ...   286   8e-78
AT3G20440.2 | Symbols: EMB2729, BE1 | alpha-amylase/ catalytic/ ...   166   8e-42
AT3G20440.1 | Symbols: EMB2729, BE1 | alpha-amylase/ catalytic/ ...   166   9e-42

>AT2G36390.1 | Symbols: SBE2.1, BE3 | SBE2.1 (starch branching
           enzyme 2.1); 1,4-alpha-glucan branching enzyme |
           chr2:15264283-15269940 FORWARD
          Length = 858

 Score =  294 bits (752), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 146/244 (59%), Positives = 175/244 (71%), Gaps = 16/244 (6%)

Query: 2   HGIYWEF----NEYFSEATYVDAVVYLMLANSLIHNTLPDATVIAEDVSGMPGLGHDVSE 57
           HG+  EF    NEYF  +T VDAVVYLML N LIH   P+A V+ EDVSGMP     V +
Sbjct: 496 HGLQVEFTGNYNEYFGYSTDVDAVVYLMLVNDLIHGLYPEAIVVGEDVSGMPAFCVPVED 555

Query: 58  GGIGFDYRLAMAIPDKWIDYLKNKSDEEWSMEEIAWSLTNRRYTEKCVAYAESHDQAIVG 117
           GG+GFDYRL MA+ DKWI+ LK K DE+W + +I ++LTNRR+ EKCV YAESHDQA+VG
Sbjct: 556 GGVGFDYRLHMAVADKWIELLK-KRDEDWQVGDITFTLTNRRWGEKCVVYAESHDQALVG 614

Query: 118 DKTVAFLLMDKEMYSGMSCLTDAPPIIERGIALHKMVHFLTMALGGEGYLNFMGNEFGHP 177
           DKT+AF LMDK+MY  M+    A P ++RGIALHKM+  +TM LGGEGYLNFMGNEFGHP
Sbjct: 615 DKTIAFWLMDKDMYDFMAVDRQATPRVDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHP 674

Query: 178 EWIDFPRE-----------GNGWSYDKCRRQWNLVDTEHLRYKFMNAFDRAMNGLDEKYS 226
           EWIDFPR            GN  SYDKCRR+++L D E+LRY  +  FDRAM  L+E Y 
Sbjct: 675 EWIDFPRTDQHLPDGRVIAGNNGSYDKCRRRFDLGDAEYLRYHGLQEFDRAMQNLEETYG 734

Query: 227 FLAS 230
           F+ S
Sbjct: 735 FMTS 738


>AT5G03650.1 | Symbols: SBE2.2 | SBE2.2 (starch branching enzyme
           2.2); 1,4-alpha-glucan branching enzyme |
           chr5:931924-937470 FORWARD
          Length = 805

 Score =  286 bits (732), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 173/239 (72%), Gaps = 12/239 (5%)

Query: 3   GIYWEFNEYFSEATYVDAVVYLMLANSLIHNTLPDATVIAEDVSGMPGLGHDVSEGGIGF 62
           G    + EYF   T VDAV YLML N +IH   P+A  + EDVSGMP     V +GG+GF
Sbjct: 466 GFTGNYTEYFGLETDVDAVNYLMLVNDMIHGLYPEAITVGEDVSGMPTFCIPVQDGGVGF 525

Query: 63  DYRLAMAIPDKWIDYLKNKSDEEWSMEEIAWSLTNRRYTEKCVAYAESHDQAIVGDKTVA 122
           DYRL MAI DKWI+ LK K DE+W M +I ++LTNRR++EKC++YAESHDQA+VGDKT+A
Sbjct: 526 DYRLHMAIADKWIEMLK-KRDEDWQMGDIIYTLTNRRWSEKCISYAESHDQALVGDKTIA 584

Query: 123 FLLMDKEMYSGMSCLTDAPPIIERGIALHKMVHFLTMALGGEGYLNFMGNEFGHPEWIDF 182
           F LMDK+MY  M+    + P+I+RGIALHKM+  +TM LGGEGYLNFMGNEFGHPEWIDF
Sbjct: 585 FWLMDKDMYDFMAVDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDF 644

Query: 183 PR-----------EGNGWSYDKCRRQWNLVDTEHLRYKFMNAFDRAMNGLDEKYSFLAS 230
           PR            GN +SYDKCRR+++L D ++LRY+ +  FD+AM  L+E Y F+ S
Sbjct: 645 PRGEQRLSDGSVIPGNNFSYDKCRRRFDLGDADYLRYRGLQEFDQAMQHLEENYGFMTS 703


>AT3G20440.2 | Symbols: EMB2729, BE1 | alpha-amylase/ catalytic/
           cation binding | chr3:7123603-7130364 REVERSE
          Length = 899

 Score =  166 bits (421), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 140/225 (62%), Gaps = 9/225 (4%)

Query: 7   EFNEYFSEATYVDAVVYLMLANSLIHNTLPDATVIAEDVSGMPGLGHDVSEGGIGFDYRL 66
           + ++Y ++    DA++YL+LAN ++H   P+   IAED +  PGL   VS+GG+GFDY +
Sbjct: 576 DLDDYCNQYVDRDALMYLILANEILHVQHPNIITIAEDATYYPGLCEPVSQGGLGFDYYV 635

Query: 67  AMAIPDKWIDYLKNKSDEEWSMEEIAWSLT-NRRYTEKCVAYAESHDQAIVGDKTVAFLL 125
            ++  + W+  L N  D EWSM +I  +L  N+ Y +K ++YAE+H+Q+I G ++ A +L
Sbjct: 636 NLSASEMWVSLLDNVPDNEWSMSKIVSTLVANKEYADKMLSYAENHNQSISGGRSFAEIL 695

Query: 126 MDKEMYSGM-SCLTDAPPIIERGIALHKMVHFLTMALGGEGYLNFMGNEFGHPEWIDFPR 184
                + G+ +       +++RGI+LHKM+  +T   GG  YLNFMGNEFGHPE ++FP 
Sbjct: 696 -----FGGVDNGSPGGKELLDRGISLHKMIRLITFTSGGRAYLNFMGNEFGHPERVEFPT 750

Query: 185 EGNGWSYDKCRRQWNLVDTEHLRYKFMNAFDRAMNGLDEKYSFLA 229
           + N +S+    R+W+L+++    + F  +FD+ +  LD+    L+
Sbjct: 751 QSNNFSFSLANRRWDLLESGVHHHLF--SFDKELMDLDKSKGILS 793


>AT3G20440.1 | Symbols: EMB2729, BE1 | alpha-amylase/ catalytic/
           cation binding | chr3:7123603-7130364 REVERSE
          Length = 869

 Score =  166 bits (421), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 140/225 (62%), Gaps = 9/225 (4%)

Query: 7   EFNEYFSEATYVDAVVYLMLANSLIHNTLPDATVIAEDVSGMPGLGHDVSEGGIGFDYRL 66
           + ++Y ++    DA++YL+LAN ++H   P+   IAED +  PGL   VS+GG+GFDY +
Sbjct: 546 DLDDYCNQYVDRDALMYLILANEILHVQHPNIITIAEDATYYPGLCEPVSQGGLGFDYYV 605

Query: 67  AMAIPDKWIDYLKNKSDEEWSMEEIAWSLT-NRRYTEKCVAYAESHDQAIVGDKTVAFLL 125
            ++  + W+  L N  D EWSM +I  +L  N+ Y +K ++YAE+H+Q+I G ++ A +L
Sbjct: 606 NLSASEMWVSLLDNVPDNEWSMSKIVSTLVANKEYADKMLSYAENHNQSISGGRSFAEIL 665

Query: 126 MDKEMYSGM-SCLTDAPPIIERGIALHKMVHFLTMALGGEGYLNFMGNEFGHPEWIDFPR 184
                + G+ +       +++RGI+LHKM+  +T   GG  YLNFMGNEFGHPE ++FP 
Sbjct: 666 -----FGGVDNGSPGGKELLDRGISLHKMIRLITFTSGGRAYLNFMGNEFGHPERVEFPT 720

Query: 185 EGNGWSYDKCRRQWNLVDTEHLRYKFMNAFDRAMNGLDEKYSFLA 229
           + N +S+    R+W+L+++    + F  +FD+ +  LD+    L+
Sbjct: 721 QSNNFSFSLANRRWDLLESGVHHHLF--SFDKELMDLDKSKGILS 763