Jatropha Genome Database

JcCB0394911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0394911.10 - phase: 0 /partial
         (473 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72390.1 | Symbols:  | unknown protein | chr1:27245455-272512...   384   e-107

>AT1G72390.1 | Symbols:  | unknown protein | chr1:27245455-27251218
           FORWARD
          Length = 1325

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/465 (48%), Positives = 283/465 (60%), Gaps = 45/465 (9%)

Query: 1   AIESGRLPGDILDDIPRKYVNGTLICEVRDYRKCPPEQGSCIPSVGWLPIVNRVRLRMSL 60
           AIE+GRLPGDIL+DIP K+V+G +ICEV DYRK    Q S        P++N++RL+MSL
Sbjct: 110 AIEAGRLPGDILEDIPCKFVDGVVICEVHDYRKHTSSQVS--------PVINKLRLKMSL 161

Query: 61  ENVVKDIPLISDNSWTYGDLMEVESRILKALQPRLFLDPTPKLDRLCNNPTATXXXXXXX 120
           ENVVKDIP +SDNSWTYGDLMEVESRILKALQP L LDP P+LDRL  NP          
Sbjct: 162 ENVVKDIPSMSDNSWTYGDLMEVESRILKALQPELCLDPLPRLDRLSKNPLTAKLDLSLS 221

Query: 121 XXXXXXXXQMPEVTVTSSSRIHGKKVCIDRVLESSNSRLGDSGMISGNMMPQSVQENLTT 180
                   QM EVTV S ++I GKKVCIDR+ ESS     + G + G+++ Q    N   
Sbjct: 222 TLRRKRLRQMAEVTVMSQNKIQGKKVCIDRLPESS-----ERGNLPGHLIMQQTNNNQAI 276

Query: 181 QNLVPNMLPLRARSFVSDGNVSALPLVSQQSRYQLGLGTPRSMQDQGSGSLVNIPGASPA 240
           QNL  NML       + D   S+L LV  Q +  +G+G+ R+ QDQGS S V++ GASP 
Sbjct: 277 QNLGTNMLAGLRSQPLQDAPNSSLALVPPQQQRYMGIGSTRNTQDQGSNS-VSVSGASPG 335

Query: 241 GQDMMITYG-DHINSGASLHGKRENQDGQMSPLSSFNKRARVTSVGPDGMQQQQLGPHID 299
           G D M+ YG D +N G S H KRE+Q+GQMS +   NKR RV+ +GPDG+ QQQLG  +D
Sbjct: 336 GLDAMLPYGSDSMNPGTSFHRKRESQEGQMSSMPGLNKRTRVSHMGPDGVPQQQLGQRMD 395

Query: 300 GLHASDMNWKNSLLPHQ-ATARGIHYANTGIQKYPQQVFEGVMNQNAMPTSFSAPQQ-GV 357
           GLH SD NWKN+LL HQ    R I Y NT IQ++     EGVMNQ   P  F A QQ G+
Sbjct: 396 GLHGSDTNWKNTLLQHQDMLGRSIQYPNTSIQRFSPHQMEGVMNQEGGPMQFPASQQGGM 455

Query: 358 RFGPKEEQFETEKLD------VSELNQGKNDM---MDTEMGHXXXXXXXXXXXXXXXXMR 408
           ++  KEE FET K+D      +  +    ND+   + + M H                +R
Sbjct: 456 KYTSKEEPFETGKIDGGTRNNIPGVGSDANDLDPRIQSRMPH-------------NAFIR 502

Query: 409 SNFSQTAWN-----NLSQDSRKEEQIQGKRKTVQSPRLSAGTFPQ 448
           SNF QT+WN      + ++ +KEEQ   +R + QSPRLSAG  PQ
Sbjct: 503 SNFPQTSWNVNPGQQIEKEPKKEEQFS-RRISAQSPRLSAGGPPQ 546