Jatropha Genome Database

JcCB0393011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0393011.10 + phase: 0 
         (67 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05240.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    50   2e-07
AT2G40630.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    45   7e-06

>AT5G05240.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           Uncharacterised conserved protein UCP030365
           (InterPro:IPR016953); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G40630.1); Has 24
           Blast hits to 24 proteins in 7 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 22;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr5:1554023-1556230 REVERSE
          Length = 530

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 1   MQLHCDHGLQGFQWNTIFGFQHQETSENYTRIGKADSSERELAVRAAAASIYSTCSFLMS 60
           MQ HCD GLQ    ++   F       + +R   A  S+++L ++AAAASIYSTCSFL  
Sbjct: 467 MQSHCDEGLQHLSLSSGQNFLQLGMPLD-SRAANALISDKDLVIKAAAASIYSTCSFL-- 523

Query: 61  KENVSC 66
           +EN++C
Sbjct: 524 EENITC 529


>AT2G40630.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Uncharacterised conserved protein UCP030365
           (InterPro:IPR016953); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT5G05240.1); Has 101
           Blast hits to 95 proteins in 44 species: Archae - 0;
           Bacteria - 32; Metazoa - 24; Fungi - 6; Plants - 20;
           Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
           | chr2:16958442-16960942 FORWARD
          Length = 535

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 1   MQLHCDHGLQGFQWNTIFGFQHQETSENYTRIGKADSSERELAVRAAAASIYSTCSFLMS 60
           MQ  C+HGL+  +      +    +  + +  GK  + E  +AV+AAAASI+STCSFL+S
Sbjct: 472 MQSRCNHGLRQME-----EYSPFSSQSSDSSFGKDGNQETSMAVQAAAASIFSTCSFLLS 526