Jatropha Genome Database

JcCB0391751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0391751.10 - phase: 0 /partial
         (59 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27280.1 | Symbols:  | zinc finger (DNL type) family protein ...    67   3e-12

>AT5G27280.1 | Symbols:  | zinc finger (DNL type) family protein |
           chr5:9617548-9618369 FORWARD
          Length = 212

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/36 (77%), Positives = 32/36 (88%), Gaps = 1/36 (2%)

Query: 1   CCGCNIFHKLVDNLNLFHEMKCYV-NPSFNYRDAKW 35
           CCGCN+FHKLVDNLNLFHE+K YV + SF+Y DAKW
Sbjct: 152 CCGCNVFHKLVDNLNLFHEVKYYVSSSSFDYTDAKW 187