Jatropha Genome Database

JcCB0389891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0389891.20 - phase: 0 
         (99 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08280.1 | Symbols: HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE...   119   4e-28

>AT5G08280.1 | Symbols: HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE);
           hydroxymethylbilane synthase | chr5:2663763-2665596
           REVERSE
          Length = 382

 Score =  119 bits (298), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/77 (79%), Positives = 68/77 (88%), Gaps = 1/77 (1%)

Query: 10  VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSILSIDDMLPAVAQGAIGI 69
           V ENFRGNVQTRL KL  G VQATLLALAGLKRL+MTENV SILS+D+MLPAVAQGAIGI
Sbjct: 218 VEENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGI 277

Query: 70  ACRSNDDKMVRLYLSNL 86
           ACR++DDKM   YL++L
Sbjct: 278 ACRTDDDKMAT-YLASL 293