Jatropha Genome Database

JcCB0386201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0386201.10 - phase: 0 
         (218 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19910.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   110   9e-25

>AT3G19910.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr3:6926497-6929324 FORWARD
          Length = 340

 Score =  110 bits (274), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 54  PRQSSRRTPFTNLSQVDADLALARTLQEQERAYMMLRFGNEGSDYGSWEAGSYFPXXXXX 113
           PR SS R PFTNLSQ+DADLALARTLQEQERAYMML   +E SDYGSWE GSY       
Sbjct: 79  PRSSSARVPFTNLSQIDADLALARTLQEQERAYMMLTMNSEISDYGSWETGSYVYDEDEF 138

Query: 114 XXXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDA-DVDNNPAVDLDPAMFSSDEA 172
                                       D  DV+ H +  D +++   D++   ++ DEA
Sbjct: 139 DDPENEDEDDDEDEYETDDDPQE-----DGLDVNVHANEDDQEDDGNSDIEEVAYTDDEA 193

Query: 173 YARALQDXXXXXXXXXXXXXXGINEREVEDVEDLGANSQ 211
           YARALQ+              G+  R VED+ED    SQ
Sbjct: 194 YARALQEAEERDMAARLSALSGLANRVVEDLEDESHTSQ 232