Jatropha Genome Database

JcCB0384321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0384321.10 - phase: 2 /partial
         (176 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10360.1 | Symbols: EMB3010 | EMB3010 (embryo defective 3010)...   213   5e-56
AT4G31700.1 | Symbols: RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); struc...   211   2e-55
AT4G31700.2 | Symbols: RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); struc...   174   3e-44

>AT5G10360.1 | Symbols: EMB3010 | EMB3010 (embryo defective 3010);
           structural constituent of ribosome |
           chr5:3258734-3260142 REVERSE
          Length = 249

 Score =  213 bits (542), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/146 (72%), Positives = 113/146 (77%), Gaps = 5/146 (3%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIV
Sbjct: 45  FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           S DLSVLNLVIVKKG +DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRR
Sbjct: 105 SPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRR 164

Query: 121 TFTTKSGNISLLRYIYNSPAIVCIIS 146
           TFT K G     + +  +P I  +++
Sbjct: 165 TFTNKKG-----KKVSKAPKIQRLVT 185


>AT4G31700.1 | Symbols: RPS6 | RPS6 (RIBOSOMAL PROTEIN S6);
           structural constituent of ribosome |
           chr4:15346306-15347714 REVERSE
          Length = 250

 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 111/146 (76%), Gaps = 5/146 (3%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           FKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIV
Sbjct: 45  FKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           S DLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR
Sbjct: 105 SPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRR 164

Query: 121 TFTTKSGNISLLRYIYNSPAIVCIIS 146
            FT K G     + +  +P I  +++
Sbjct: 165 KFTNKKG-----KEVSKAPKIQRLVT 185


>AT4G31700.2 | Symbols: RPS6 | RPS6 (RIBOSOMAL PROTEIN S6);
           structural constituent of ribosome |
           chr4:15346306-15347075 REVERSE
          Length = 188

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 94/128 (73%), Gaps = 5/128 (3%)

Query: 19  MKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSQDLSVLNLVIVKKGEND 78
           MKQGVLTPGRVRLLLHRGTPCF                 CIVS DLSVLNLVIVKKGEND
Sbjct: 1   MKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGEND 60

Query: 79  LPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGNISLLRYIYNS 138
           LPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K G     + +  +
Sbjct: 61  LPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKG-----KEVSKA 115

Query: 139 PAIVCIIS 146
           P I  +++
Sbjct: 116 PKIQRLVT 123