Jatropha Genome Database

JcCB0383651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0383651.10 + phase: 0 /partial
         (68 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14600.1 | Symbols:  | 60S ribosomal protein L18A (RPL18aC) |...    99   5e-22
AT2G34480.1 | Symbols:  | 60S ribosomal protein L18A (RPL18aB) |...    98   9e-22
AT1G29965.1 | Symbols:  | 60S ribosomal protein L18A  (RPL18aA) ...    92   8e-20
AT1G29970.2 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN ...    91   2e-19

>AT3G14600.1 | Symbols:  | 60S ribosomal protein L18A (RPL18aC) |
          chr3:4910773-4911933 FORWARD
          Length = 178

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LPTENDEHPKIYRMKLW  NEV AKSKFWYF+RKLKKV+++  + L +
Sbjct: 5  RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63


>AT2G34480.1 | Symbols:  | 60S ribosomal protein L18A (RPL18aB) |
          chr2:14532916-14534161 REVERSE
          Length = 178

 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 51/59 (86%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKV+++  + L +
Sbjct: 5  RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAI 63


>AT1G29965.1 | Symbols:  | 60S ribosomal protein L18A  (RPL18aA) |
          chr1:10498458-10499373 REVERSE
          Length = 178

 Score = 91.7 bits (226), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 50/60 (83%)

Query: 1  MQFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          ++ HQYQVVGR LPTE DE PKIYRMKLWATNEV AKSKFWY+LR+ KKV+++  + L +
Sbjct: 4  IRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAI 63


>AT1G29970.2 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN
           L18A-1); structural constituent of ribosome |
           chr1:10498458-10501311 REVERSE
          Length = 312

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 1   MQFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
           +  HQYQVVGR LPTE DE PKIYRMKLWATNEV AKSKFWY+LR+ KKV+++  + L +
Sbjct: 138 IALHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAI 197