Jatropha Genome Database

JcCB0379211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0379211.10 - phase: 0 /partial
         (179 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative / g...   330   3e-91

>AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative |
           chr4:16471956-16476795 FORWARD
          Length = 886

 Score =  330 bits (846), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 169/179 (94%)

Query: 1   PVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 60
           PVV+SAALVSG+HLL+TNPEIVKRWSNEVQE +QSR+ALVQFHALALLHQIRQNDRLAVS
Sbjct: 155 PVVSSAALVSGLHLLKTNPEIVKRWSNEVQEGIQSRSALVQFHALALLHQIRQNDRLAVS 214

Query: 61  KLVTSLTRGTVRSPLAQCLLIRYTSQVIRESGANTQTGDRPFYDFLEGCLRHKAEMVIFE 120
           KLV SLTRG+VRSPLAQCLLIRYTSQVIR+   + Q+G+RPFY+FLE CLRHKAEMVI E
Sbjct: 215 KLVGSLTRGSVRSPLAQCLLIRYTSQVIRDMANHGQSGERPFYEFLESCLRHKAEMVILE 274

Query: 121 AARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNID 179
           AARAITEL GVTSRELTPAITVLQLFLSS +PVLRFAAVRTLNKVAMTHPMAVTNCNID
Sbjct: 275 AARAITELDGVTSRELTPAITVLQLFLSSPRPVLRFAAVRTLNKVAMTHPMAVTNCNID 333