Jatropha Genome Database

JcCB0375141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0375141.10 - phase: 0 /pseudo/partial
         (241 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA REC...   380   e-106
AT5G63960.1 | Symbols: EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780)...   139   2e-33
AT5G67100.1 | Symbols: ICU2 | ICU2 (INCURVATA2); DNA-directed DN...    73   1e-13

>AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA RECOVERY
            PROTEIN 3); DNA binding / DNA-directed DNA polymerase |
            chr1:25287707-25296714 REVERSE
          Length = 1890

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/210 (84%), Positives = 197/210 (93%)

Query: 24   QVRKGVLPRLLEEILSTRIMVKQAMKKLAPTELVLHRIFNARQLALKLIANVTYGYTAAG 83
            +VR+G+LPRLLEEILSTRIMVK+AMKKL P+E VLHRIFNARQLALKLIANVTYGYTAAG
Sbjct: 1421 EVRRGILPRLLEEILSTRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAG 1480

Query: 84   FSGRMPCAELADSIVQCGRSTLEKAISLVNANDKWNAKVIYGDTDSMFVLLKGRTVKESF 143
            FSGRMPCAELADSIVQCGRSTLEKAIS VNAND WNA+V+YGDTDSMFVLLKGRTVKE+F
Sbjct: 1481 FSGRMPCAELADSIVQCGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAF 1540

Query: 144  QIGNEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIEPVFDAKGIETV 203
             +G EIASA+T MNP+PVTLK+EKVYHPCFLLTKKRYVGYSYE+ +Q EP+FDAKGIETV
Sbjct: 1541 VVGQEIASAITEMNPHPVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETV 1600

Query: 204  RRDTCGAVAKMMEQSLRLFLEHQNMSEVEA 233
            RRDTC AVAK MEQSLRLF E +N+S+V++
Sbjct: 1601 RRDTCEAVAKTMEQSLRLFFEQKNISKVKS 1630


>AT5G63960.1 | Symbols: EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780);
           DNA binding / DNA-directed DNA polymerase/ nucleic acid
           binding / nucleotide binding | chr5:25599597-25606672
           FORWARD
          Length = 1095

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 12/206 (5%)

Query: 25  VRKGVLPRLLEEILSTRIMVKQAMKKLA-PTELVLHRIFNARQLALKLIANVTYGYTAAG 83
           ++KG+LP +LEE+L+ R   K  +K+   P E     + + RQLALK+ AN  YG+T A 
Sbjct: 649 LQKGILPEILEELLTARKRAKADLKEAKDPLE---KAVLDGRQLALKISANSVYGFTGAT 705

Query: 84  FSGRMPCAELADSIVQCGRSTLEKAISLVN------ANDKWNAKVIYGDTDSMFVLLKGR 137
             G++PC E++ S+   GR  +E+   LV          ++NA+VIYGDTDS+ V     
Sbjct: 706 V-GQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVS 764

Query: 138 TVKESFQIGNEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIEPVFDA 197
            V+ +  +G E A  ++     P+ L+ EKVY P  L+ KKRY G  + N  Q + + D 
Sbjct: 765 DVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDKM-DT 823

Query: 198 KGIETVRRDTCGAVAKMMEQSLRLFL 223
           KGIETVRRD C  V  ++ +SL   L
Sbjct: 824 KGIETVRRDNCLLVKNLVTESLNKIL 849


>AT5G67100.1 | Symbols: ICU2 | ICU2 (INCURVATA2); DNA-directed DNA
            polymerase | chr5:26776994-26785104 FORWARD
          Length = 1492

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 16/199 (8%)

Query: 13   RKESHTHSLHLQVRKGVLPRLLEEILSTRIMVKQAMKKLAPTELVLHRIFNARQLALKLI 72
            R E     L      G+LP+L+E ++S R  VK  MKK    +   +   + RQ ALKL 
Sbjct: 939  RSEDGVPRLPSSQTPGILPKLMEHLVSIRKSVKLKMKKETGLK---YWELDIRQQALKLT 995

Query: 73   ANVTYGYTAAGFS-GRMPCAELADSIVQCGRSTLEKAISLVNANDKWNAKVIYGDTDSMF 131
            AN  YG    GFS  R     LA+ I   GR  L++ + LV   +  N +VIYGDTDS+ 
Sbjct: 996  ANSMYG--CLGFSNSRFYAKPLAELITLQGRDILQRTVDLV--QNHLNLEVIYGDTDSIM 1051

Query: 132  VLLKGRTVKESFQIGNEIASAVTAMNPNPVTLKL--EKVYHPCFLLTKKRY--VGYSYEN 187
            +      ++E   I +++   +  +N     LK+  + +Y    LL KK+Y  V   +++
Sbjct: 1052 IHSGLDDIEEVKAIKSKV---IQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKLQFKD 1108

Query: 188  ADQIEPVFDAKGIETVRRD 206
                E + + KG++ VRRD
Sbjct: 1109 GKPCEDI-ERKGVDMVRRD 1126