Jatropha Genome Database

JcCB0375071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0375071.10 + phase: 2 /partial
         (112 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62760.1 | Symbols:  | nuclear protein ZAP-related | chr5:252...   170   1e-43

>AT5G62760.1 | Symbols:  | nuclear protein ZAP-related |
           chr5:25204730-25209393 REVERSE
          Length = 661

 Score =  170 bits (431), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/100 (74%), Positives = 85/100 (85%)

Query: 6   QLTLLCWYVCIVLVDDRNLRVADFAQFWAIAKRSGYEVYISEATYKDPVGCAARNVHGFT 65
           +LT+ CWY+ ++LVDDRNLRVADF QFWA AKRSGYE YI EATYKDP GCAARNVHG T
Sbjct: 384 ELTVSCWYMSLILVDDRNLRVADFTQFWATAKRSGYEAYILEATYKDPTGCAARNVHGIT 443

Query: 66  LDEIKSMAEQWEEAPVLYLQLDIKSLFHGDDLKESGIQEV 105
           +D+++ MAEQWEEAP LY+QLDIKS    DDLKE+ IQEV
Sbjct: 444 VDQVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEV 483