Jatropha Genome Database

JcCB0374611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0374611.10 - phase: 1 /pseudo
         (114 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37280.1 | Symbols:  | MRG family protein | chr4:17546748-175...   102   4e-23
AT1G02740.1 | Symbols:  | chromatin binding | chr1:599734-602021...   100   3e-22

>AT4G37280.1 | Symbols:  | MRG family protein |
           chr4:17546748-17549362 REVERSE
          Length = 320

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%), Gaps = 3/86 (3%)

Query: 27  TDSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILIT 86
           TDS+ EILKGIR YFDKALPVMLLYKKER+QY  S+ +DTSPST+YGAEHLLRLF  L  
Sbjct: 207 TDSVAEILKGIRSYFDKALPVMLLYKKERRQYQESIVDDTSPSTVYGAEHLLRLFVKLPD 266

Query: 87  LMLCFCFFEQGRVTVQ---SSFLRIL 109
           L       E+    +Q   S FL+ +
Sbjct: 267 LFSYVNMEEETWSRMQQTLSDFLKFI 292


>AT1G02740.1 | Symbols:  | chromatin binding | chr1:599734-602021
           REVERSE
          Length = 327

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 59/83 (71%)

Query: 27  TDSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILIT 86
           TDS+ EILKG+RCYFDKALPVMLLY  ER+QY  SV    SPST+YGAEHLLRLF  L  
Sbjct: 219 TDSLEEILKGLRCYFDKALPVMLLYNNERKQYEESVSGGVSPSTVYGAEHLLRLFVKLPE 278

Query: 87  LMLCFCFFEQGRVTVQSSFLRIL 109
           L++     E+    +Q +F+ IL
Sbjct: 279 LLVHVNMAEETLKELQDNFVDIL 301