Jatropha Genome Database
- JcCB0374481.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0374481.10 - phase: 0 /partial
(146 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10860.1 | Symbols: | CBS domain-containing protein | chr5:3... 244 1e-65
AT1G47271.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 147 3e-36
AT3G52950.1 | Symbols: | CBS domain-containing protein / octico... 59 1e-09
AT2G36500.1 | Symbols: | CBS domain-containing protein / octico... 58 2e-09
AT5G63490.1 | Symbols: | CBS domain-containing protein / octico... 57 5e-09
AT5G50530.1 | Symbols: | CBS domain-containing protein / octico... 54 3e-08
AT5G50640.1 | Symbols: | CBS domain-containing protein / octico... 54 3e-08
>AT5G10860.1 | Symbols: | CBS domain-containing protein |
chr5:3429173-3430142 REVERSE
Length = 206
Score = 244 bits (624), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/146 (82%), Positives = 125/146 (85%)
Query: 1 LKAKGKGADGSWLWCTTDDTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKI 60
+K+KGK ADGSWLWCTTDDTVYDAVKSMT HNVGALVVVKPGEQ++LAGIITERDYLRKI
Sbjct: 61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120
Query: 61 IVQGRSSKSTKVGDIMTEENKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSI 120
IVQGRSSKSTKVGDIMTEENKLITVTP TKVL+AMQLMTDNRIRHIPVI DK MIGMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSI 180
Query: 121 GDXXXXXXXXXXXXXXXXNAYIQGGY 146
GD NAYIQGGY
Sbjct: 181 GDVVRAVVHEHREELQRLNAYIQGGY 206
>AT1G47271.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Cystathionine beta-synthase, core (InterPro:IPR000644);
BEST Arabidopsis thaliana protein match is: CBS
domain-containing protein (TAIR:AT5G10860.1); Has 5358
Blast hits to 5270 proteins in 1084 species: Archae -
620; Bacteria - 3536; Metazoa - 1; Fungi - 100; Plants -
159; Viruses - 0; Other Eukaryotes - 942 (source: NCBI
BLink). | chr1:17328856-17330343 FORWARD
Length = 193
Score = 147 bits (370), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 11 SWLWCTTDDTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKST 70
+W+ C T+DTV DAVK+M HN+G+LVV++PG+Q+ +AGI+TERDY++KII GRSSK T
Sbjct: 58 TWISCRTNDTVSDAVKNMAKHNIGSLVVLEPGDQQYIAGIVTERDYMKKIIGAGRSSKLT 117
Query: 71 KVGDIMTEENKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSIGDXXXXXXXX 130
KVG++MT+E+KL+TV+ T +++AMQLM++N IRH+PVI D +++G++S+ D
Sbjct: 118 KVGEVMTDESKLVTVSSGTNIIKAMQLMSENHIRHVPVI-DGKIVGLISMVDVVKAIVDH 176
Query: 131 XXXXXXXXNAYIQGGY 146
N +I+G Y
Sbjct: 177 QNGELKRLNEFIKGDY 192
>AT3G52950.1 | Symbols: | CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein | chr3:19634866-19636536 FORWARD
Length = 556
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 20 TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
TV+DA + M V A ++ L+GI+T++D ++I +G T V +MT
Sbjct: 80 TVFDACRRMAARRVDACLLTD--SSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRN 137
Query: 80 NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSI 120
I VT ++ L+A+Q M + RH+PV+ + E+I ++ I
Sbjct: 138 P--IFVTSDSLALEALQKMVQGKFRHLPVVENGEVIALLDI 176
>AT2G36500.1 | Symbols: | CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein | chr2:15318473-15320083 FORWARD
Length = 536
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 20 TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
TV+DA + M V A+++ L+GI+T++D ++I +G + T V +MT
Sbjct: 78 TVFDACRRMAARRVDAVLLTD--SSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMTRN 135
Query: 80 NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSI 120
I VT ++ ++A+Q M + RH+PV+ + E+I ++ I
Sbjct: 136 P--IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIALLDI 174
>AT5G63490.1 | Symbols: | CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein | chr5:25418716-25421970 REVERSE
Length = 543
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 20 TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
T+Y+A K M V AL++ E L GI+T++D ++I Q + + T V +MT+
Sbjct: 71 TIYEACKRMASRRVDALLLTDSNEM--LCGILTDKDIATRVISQELNVEETPVSKVMTKN 128
Query: 80 NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSIG 121
V T ++A+Q M + RH+PV+ + E+I ++ I
Sbjct: 129 PMF--VLSETLAVEALQKMVQGKFRHLPVVENGEVIALLDIA 168
>AT5G50530.1 | Symbols: | CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein | chr5:20571876-20574922 REVERSE
Length = 548
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 20 TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
T+++A + M V AL++ L GI+T+RD K+I + + + T V +MT+
Sbjct: 79 TLFEACRRMAARRVDALLLT--DSNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTKN 136
Query: 80 NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSIG 121
+ V +T ++A+Q M + RH+PV+ + E+I ++ I
Sbjct: 137 P--VFVLSDTIAVEALQKMVQGKFRHLPVVENGEVIALLDIA 176
>AT5G50640.1 | Symbols: | CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein | chr5:20605218-20608264 REVERSE
Length = 548
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 20 TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
T+++A + M V AL++ L GI+T+RD K+I + + + T V +MT+
Sbjct: 79 TLFEACRRMAARRVDALLLT--DSNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTKN 136
Query: 80 NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSIG 121
+ V +T ++A+Q M + RH+PV+ + E+I ++ I
Sbjct: 137 P--VFVLSDTIAVEALQKMVQGKFRHLPVVENGEVIALLDIA 176