Jatropha Genome Database
- JcCB0372261.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0372261.10 - phase: 2 /pseudo/partial
(231 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G27230.1 | Symbols: | INVOLVED IN: biological_process unknow... 109 1e-24
AT3G22440.1 | Symbols: | hydroxyproline-rich glycoprotein famil... 84 8e-17
AT1G31814.1 | Symbols: FRL2 | FRL2 (FRIGIDA LIKE 2) | chr1:11412... 77 1e-14
AT4G14900.1 | Symbols: | hydroxyproline-rich glycoprotein famil... 76 1e-14
AT5G48385.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 73 1e-13
AT5G16320.1 | Symbols: FRL1 | FRL1 (FRIGIDA LIKE 1) | chr5:53445... 72 3e-13
AT5G27220.1 | Symbols: | protein transport protein-related | ch... 61 6e-10
>AT5G27230.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: seed; EXPRESSED DURING: E expanded
cotyledon stage; CONTAINS InterPro DOMAIN/s:
Frigida-like (InterPro:IPR012474); BEST Arabidopsis
thaliana protein match is: hydroxyproline-rich
glycoprotein family protein (TAIR:AT3G22440.1); Has 7968
Blast hits to 5791 proteins in 512 species: Archae -
158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants
- 1028; Viruses - 76; Other Eukaryotes - 2727 (source:
NCBI BLink). | chr5:9584255-9587838 FORWARD
Length = 948
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Query: 43 VKRRGKRICTLLGKKTGKNGMDPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKV 102
VK K++ K K+ D LEVICFL FL + + S F W
Sbjct: 627 VKGDAKKLAVYWKDKIAKSKRDQLEVICFLQFLGIFGIVSEFKADDLLGLLDNSYWQTVS 686
Query: 103 PELVQALGLAEMIPNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVS-ILKDHL---SNSA 158
P+L Q LGL + IP FI+NLIK RI A+ YI++ MV +F PVS I+ D L SA
Sbjct: 687 PDLCQFLGLDDAIPGFIQNLIKTGHRIKAIDYIYSFGMVHRFQPVSAIINDSLRITKESA 746
Query: 159 KELQNENRNSTKVQIRAIDRELNALKAVWKCIADYNIQG 197
++ E +N + Q+ AIDR++ AL+A KCI+ + ++
Sbjct: 747 EKSYREAKNESTTQVAAIDRQVRALRAAIKCISCHKLES 785
>AT3G22440.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr3:7959854-7961886 FORWARD
Length = 532
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 11/201 (5%)
Query: 28 VVGTVKESLSPDXSRVKRRGKRICTLLGKKTGKNG----MDPLEVICFLHFLAAYSLAST 83
V+G + ++P VK + K I K + G + +V FL L + + +
Sbjct: 215 VIGKSRLLVTPS---VKEKAKEIAETWKKSLEERGRIENVKTPDVHTFLQHLVTFGIVKS 271
Query: 84 FTXXXXXXXXXXXXWHEKVPELVQALGLAEMIPNFIKNLIKKKQRIVAVKYIFALDMVDK 143
W +++P+L ++GL + +P+ I+ LI + Q++ AV + + + +VDK
Sbjct: 272 EDLALYRKLVVGSAWRKQMPKLAVSVGLGDQMPDMIEELISRGQQLDAVHFTYEVGLVDK 331
Query: 144 FPPVSILKDHLSN---SAKELQNENRNSTKVQIRAIDRELNALKAVWKCIADYNI-QGLS 199
FPPV +LK +L + SA + ++ N+ + +E +ALKAV KCI +Y + +
Sbjct: 332 FPPVPLLKAYLRDAKKSAASIMEDSSNTGRATHLVARKEQSALKAVLKCIEEYKLEEEFP 391
Query: 200 PEVLEERILYWKSIKRRNFKP 220
PE L++R+ + K KP
Sbjct: 392 PENLKKRLDQLEKTKTEKRKP 412
>AT1G31814.1 | Symbols: FRL2 | FRL2 (FRIGIDA LIKE 2) |
chr1:11412985-11414406 REVERSE
Length = 473
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 7/150 (4%)
Query: 62 GMDPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAE-MIPNFIK 120
G P E + FLH +AA+ L S F+ +++ + + +GL I ++
Sbjct: 196 GNKPSEALGFLHLVAAFELGSLFSTEEICDYIFLISKYKQATTICKKIGLDRNRIGVLVQ 255
Query: 121 NLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNS---AKELQNENRNSTKVQIRAID 177
+ + +VA+++I+ +MV +F PVSILK L NS AK + E S KVQ A D
Sbjct: 256 KFLDTGRLLVAIRFIYENEMVGEFEPVSILKTSLKNSREAAKRVCAEGNYSLKVQNEATD 315
Query: 178 RELNALKAVWKCIADYNIQGLSPEVLEERI 207
+EL+AL+AV K + + NI+ E +EE++
Sbjct: 316 KELSALRAVIKVVKEKNIES---EFMEEKL 342
>AT4G14900.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:8521759-8523607 REVERSE
Length = 532
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 8/186 (4%)
Query: 43 VKRRGKRICTL----LGKKTGKNGMDPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXW 98
VK + K I L ++ G + +V FL L + + W
Sbjct: 225 VKEKAKEIAETWKASLEERGGIENVKTPDVHTFLQHLVTFGIVKKDDLALYRKLVVGSAW 284
Query: 99 HEKVPELVQALGLAEMIPNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNSA 158
+++P+L ++GL + +P+ I+ LI + Q++ AV + F + +V FPPV +LK +L ++
Sbjct: 285 RKQMPKLAVSVGLGDQMPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAK 344
Query: 159 KE---LQNENRNSTKVQIRAIDRELNALKAVWKCIADYNI-QGLSPEVLEERILYWKSIK 214
K + +++ NS + +E +AL+AV KCI +Y + + PE L++R+ + K
Sbjct: 345 KATALITDDSNNSGRSAHLVARKEQSALRAVLKCIEEYKLEEEFPPENLKKRLDQLEKTK 404
Query: 215 RRNFKP 220
KP
Sbjct: 405 TEKRKP 410
>AT5G48385.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Frigida-like (InterPro:IPR012474); BEST Arabidopsis
thaliana protein match is: hydroxyproline-rich
glycoprotein family protein (TAIR:AT3G22440.1); Has 987
Blast hits to 921 proteins in 78 species: Archae - 0;
Bacteria - 16; Metazoa - 58; Fungi - 7; Plants - 873;
Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
| chr5:19609471-19611712 FORWARD
Length = 558
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 66 LEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAEMIPNFIKNLIKK 125
LE FL LA +++ + F + EL ++LGLAE +P I+ L+
Sbjct: 304 LEAHAFLQLLATFAIVADFKEDELLKLIPMVSRRRQAAELCRSLGLAEKMPGVIEVLVNS 363
Query: 126 KQRIVAVKYIFALDMVDKFPPVSILKDHLSNSAKEL-QNENRN-STKVQIRAIDRELNAL 183
++I AV FA ++ ++F PVS+LK +L + + Q N S VQ +REL L
Sbjct: 364 GKQIDAVNLAFAFELTEQFSPVSLLKSYLIEARRSSPQGRPGNASPAVQDEFNERELIGL 423
Query: 184 KAVWKCIADYNIQGLSP-EVLEERILYW---KSIKRRNFKP 220
K V KCI +++++ P E L +RIL K+ K+R +P
Sbjct: 424 KTVIKCIEEHSLEEQYPVEPLHKRILQLEKAKADKKRATEP 464
>AT5G16320.1 | Symbols: FRL1 | FRL1 (FRIGIDA LIKE 1) |
chr5:5344507-5345919 FORWARD
Length = 470
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 8/167 (4%)
Query: 59 GKNGMDPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLA-EMIPN 117
K G+ P E + FLH +AA+ L S F +++ + +G+ + +
Sbjct: 200 SKVGVKPFEALVFLHLVAAFELGSEFDTEELSDYVFMIAKYKQATLVCNKIGVDRKRVGK 259
Query: 118 FIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSN---SAKELQNENRNSTKVQIR 174
IK L+ + I+AVK+++ M D+F P+ +LK ++ + +A + E+ S K Q
Sbjct: 260 LIKTLLDSGKPILAVKFMYECGMTDEFEPIPVLKSYIKDCREAALRVCVEDNYSLKSQNE 319
Query: 175 AIDRELNALKAVWKCIADYNIQG-LSPEVLEERILYW---KSIKRRN 217
A D+E++ALK + K I D N++ + E +EER+ K++++RN
Sbjct: 320 ASDKEVSALKPLIKIIKDQNLESEFTQEKVEERVEELEKNKALRKRN 366
>AT5G27220.1 | Symbols: | protein transport protein-related |
chr5:9578757-9582752 FORWARD
Length = 1181
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 53 LLGKKTGKNGMDPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLA 112
++G T M PLE FL + AY L + ++ P+L ++LGL+
Sbjct: 935 MMGNSTQ---MSPLEAWGFLQLIVAYGLVHATSQDNTLRFASYVAHFKQAPKLFESLGLS 991
Query: 113 EMIPNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNSAKELQNENRNSTKVQ 172
+PN +K L+ ++ +A+++IF + F P+ +LKD + L+ + ++
Sbjct: 992 YAMPNLVKKLLDERHYFMAIRFIFYFKLKFNFSPLELLKDEIIT----LRVSTKEKRRLD 1047
Query: 173 IRAIDRELNALKAVWKCIADYNI 195
+A DR+ LK + + I D+ +
Sbjct: 1048 SQAEDRDAAKLKDIIELIEDFKL 1070