Jatropha Genome Database

JcCB0372241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0372241.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65590.1 | Symbols: HEXO3, ATHEX1 | HEXO3 (BETA-HEXOSAMINIDAS...   240   3e-64
AT3G55260.1 | Symbols: HEXO1, ATHEX2 | HEXO1 (BETA-HEXOSAMINIDAS...   201   2e-52
AT1G05590.1 | Symbols: HEXO2, ATHEX3 | HEXO2 (BETA-HEXOSAMINIDAS...   105   1e-23

>AT1G65590.1 | Symbols: HEXO3, ATHEX1 | HEXO3 (BETA-HEXOSAMINIDASE
           3); beta-N-acetylhexosaminidase/ hexosaminidase |
           chr1:24385996-24390989 FORWARD
          Length = 535

 Score =  240 bits (612), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/140 (80%), Positives = 122/140 (87%), Gaps = 1/140 (0%)

Query: 1   AQTVYGALHGLQTFSQLCYFNFTTSMVEVPMVPWTIIDQPRFPYRGLLIDTSRHYLPLPV 60
           A++VYGALHGLQTFSQLC+FN    ++E+ M PW IIDQPRF YRGLLIDTSRHYLPLPV
Sbjct: 141 AKSVYGALHGLQTFSQLCHFNLKKKVIEILMTPWNIIDQPRFSYRGLLIDTSRHYLPLPV 200

Query: 61  IEKVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSISERYTFADAAEIVRQVV 120
           I+ VIDSM YAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYS S+RYTF DAAEIV    
Sbjct: 201 IKNVIDSMTYAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSSSQRYTFEDAAEIV-NYA 259

Query: 121 SAQGIHVLAEIDVPGHALSW 140
             +GIHVLAEIDVPGHALSW
Sbjct: 260 RRRGIHVLAEIDVPGHALSW 279


>AT3G55260.1 | Symbols: HEXO1, ATHEX2 | HEXO1 (BETA-HEXOSAMINIDASE
           1); beta-N-acetylhexosaminidase/ hexosaminidase/
           hydrolase, hydrolyzing O-glycosyl compounds |
           chr3:20489317-20492858 FORWARD
          Length = 541

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 113/140 (80%), Gaps = 1/140 (0%)

Query: 1   AQTVYGALHGLQTFSQLCYFNFTTSMVEVPMVPWTIIDQPRFPYRGLLIDTSRHYLPLPV 60
           A TVYGAL GL+TFSQLC F++ T  V++   PW I D+PRF YRGLLIDTSRHYLP+ V
Sbjct: 144 ANTVYGALRGLETFSQLCAFDYITKSVQIYKAPWYIQDKPRFGYRGLLIDTSRHYLPIDV 203

Query: 61  IEKVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSISERYTFADAAEIVRQVV 120
           I+++I+SM++AKLNVLHWHIVD QSFPLE P+YP LW GAYS  ERYT  DA+EIVR   
Sbjct: 204 IKQIIESMSFAKLNVLHWHIVDEQSFPLETPTYPNLWKGAYSRWERYTVEDASEIVR-FA 262

Query: 121 SAQGIHVLAEIDVPGHALSW 140
             +GI+V+AE+DVPGHA SW
Sbjct: 263 KMRGINVMAEVDVPGHAESW 282


>AT1G05590.1 | Symbols: HEXO2, ATHEX3 | HEXO2 (BETA-HEXOSAMINIDASE
           2); beta-N-acetylhexosaminidase/ hexosaminidase/
           hydrolase, hydrolyzing O-glycosyl compounds |
           chr1:1669871-1671686 FORWARD
          Length = 580

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 83/141 (58%), Gaps = 5/141 (3%)

Query: 1   AQTVYGALHGLQTFSQLCYFNFTTSMVEVPMVPWTIIDQPRFPYRGLLIDTSRHYLPLPV 60
           A + +GA+ GL+TFSQ+ +       + V +    I D P F +RG+L+DTSR+Y  +  
Sbjct: 133 AHSAWGAMRGLETFSQMIWGTSPDLCLPVGIY---IQDSPLFGHRGVLLDTSRNYYGVDD 189

Query: 61  IEKVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKL-WNGAYSISERYTFADAAEIVRQV 119
           I + I +M+  KLNV HWHI D+QSFPL +PS P L   G+      YT  D ++IV Q 
Sbjct: 190 IMRTIKAMSANKLNVFHWHITDSQSFPLVLPSEPSLAAKGSLGPDMVYTPEDVSKIV-QY 248

Query: 120 VSAQGIHVLAEIDVPGHALSW 140
               G+ VL EID PGH  SW
Sbjct: 249 GFEHGVRVLPEIDTPGHTGSW 269