Jatropha Genome Database

JcCB0369541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0369541.10 + phase: 0 /pseudo/partial
         (85 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60060.1 | Symbols:  | unknown protein | chr1:22139282-221415...    67   3e-12

>AT1G60060.1 | Symbols:  | unknown protein |
          chr1:22139282-22141585 FORWARD
          Length = 386

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 36/53 (67%), Gaps = 5/53 (9%)

Query: 11 LLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGTK 63
          LLQHTLR            +WVYAVFWRILPRNYPPPKWD G  A DRS+G +
Sbjct: 13 LLQHTLRSLCIHENS----QWVYAVFWRILPRNYPPPKWD-GQGAYDRSRGNR 60