Jatropha Genome Database
- JcCB0369011.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0369011.10 - phase: 0 /pseudo/partial
(159 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23820.1 | Symbols: SPDS1 | SPDS1 (spermidine synthase 1); sp... 145 8e-36
AT1G70310.1 | Symbols: SPDS2 | SPDS2 (spermidine synthase 2); sp... 145 9e-36
AT1G23820.2 | Symbols: SPDS1 | SPDS1 (spermidine synthase 1); sp... 145 1e-35
AT5G53120.5 | Symbols: SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE ... 117 2e-27
AT5G53120.4 | Symbols: SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE ... 117 2e-27
AT5G53120.3 | Symbols: SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE ... 117 2e-27
AT5G53120.2 | Symbols: SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE ... 117 2e-27
AT5G53120.1 | Symbols: SPDS3, SPMS, ATSPDS3 | SPDS3 (SPERMIDINE ... 117 2e-27
AT5G19530.1 | Symbols: ACL5 | ACL5 (ACAULIS 5); spermine synthas... 67 3e-12
AT5G19530.2 | Symbols: ACL5 | ACL5 (ACAULIS 5); spermine synthas... 67 4e-12
>AT1G23820.1 | Symbols: SPDS1 | SPDS1 (spermidine synthase 1);
spermidine synthase | chr1:8420278-8422724 FORWARD
Length = 378
Score = 145 bits (367), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 84/110 (76%)
Query: 50 FPLNTPGWYADVSCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLT 109
F PGW++++S WPGEAH KVEKVLF GKS+YQD+ VFQS+ +GK+++L+G +QLT
Sbjct: 84 FSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLT 143
Query: 110 EKDEFVYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
E+DE YQEM+THLPLCSIPNPKKV RE++RH+S+ QID+
Sbjct: 144 ERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDM 193
>AT1G70310.1 | Symbols: SPDS2 | SPDS2 (spermidine synthase 2);
spermidine synthase | chr1:26485497-26487352 REVERSE
Length = 340
Score = 145 bits (366), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 82/105 (78%)
Query: 55 PGWYADVSCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEF 114
PGW++++S WPGEAH KVEK+LF GKS+YQD+ VFQS+ +GK+++L+G +QLTE+DE
Sbjct: 49 PGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDEC 108
Query: 115 VYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
YQEM+THLPLCSI NPKKV RE++RHSSV QIDI
Sbjct: 109 AYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSVEQIDI 153
>AT1G23820.2 | Symbols: SPDS1 | SPDS1 (spermidine synthase 1);
spermidine synthase | chr1:8420278-8422480 FORWARD
Length = 327
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 84/110 (76%)
Query: 50 FPLNTPGWYADVSCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLT 109
F PGW++++S WPGEAH KVEKVLF GKS+YQD+ VFQS+ +GK+++L+G +QLT
Sbjct: 84 FSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLT 143
Query: 110 EKDEFVYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
E+DE YQEM+THLPLCSIPNPKKV RE++RH+S+ QID+
Sbjct: 144 ERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDM 193
>AT5G53120.5 | Symbols: SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3);
spermidine synthase/ spermine synthase |
chr5:21535429-21537653 FORWARD
Length = 359
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%)
Query: 65 WPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLP 124
WPGEAH KVEKVLF KS++Q++ VF+S+ +GK+++L+G +QLTEKDE YQEM+ HLP
Sbjct: 78 WPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHLP 137
Query: 125 LCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
LCSI +PK V REISRHSSV IDI
Sbjct: 138 LCSISSPKNVLVVGGGDGGVLREISRHSSVEVIDI 172
>AT5G53120.4 | Symbols: SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3);
spermidine synthase/ spermine synthase |
chr5:21535429-21537653 FORWARD
Length = 359
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%)
Query: 65 WPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLP 124
WPGEAH KVEKVLF KS++Q++ VF+S+ +GK+++L+G +QLTEKDE YQEM+ HLP
Sbjct: 78 WPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHLP 137
Query: 125 LCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
LCSI +PK V REISRHSSV IDI
Sbjct: 138 LCSISSPKNVLVVGGGDGGVLREISRHSSVEVIDI 172
>AT5G53120.3 | Symbols: SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3);
spermidine synthase/ spermine synthase |
chr5:21535429-21537653 FORWARD
Length = 359
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%)
Query: 65 WPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLP 124
WPGEAH KVEKVLF KS++Q++ VF+S+ +GK+++L+G +QLTEKDE YQEM+ HLP
Sbjct: 78 WPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHLP 137
Query: 125 LCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
LCSI +PK V REISRHSSV IDI
Sbjct: 138 LCSISSPKNVLVVGGGDGGVLREISRHSSVEVIDI 172
>AT5G53120.2 | Symbols: SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3);
spermidine synthase/ spermine synthase |
chr5:21535429-21537653 FORWARD
Length = 359
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%)
Query: 65 WPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLP 124
WPGEAH KVEKVLF KS++Q++ VF+S+ +GK+++L+G +QLTEKDE YQEM+ HLP
Sbjct: 78 WPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHLP 137
Query: 125 LCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
LCSI +PK V REISRHSSV IDI
Sbjct: 138 LCSISSPKNVLVVGGGDGGVLREISRHSSVEVIDI 172
>AT5G53120.1 | Symbols: SPDS3, SPMS, ATSPDS3 | SPDS3 (SPERMIDINE
SYNTHASE 3); spermidine synthase/ spermine synthase |
chr5:21535429-21537653 FORWARD
Length = 359
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%)
Query: 65 WPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLP 124
WPGEAH KVEKVLF KS++Q++ VF+S+ +GK+++L+G +QLTEKDE YQEM+ HLP
Sbjct: 78 WPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHLP 137
Query: 125 LCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
LCSI +PK V REISRHSSV IDI
Sbjct: 138 LCSISSPKNVLVVGGGDGGVLREISRHSSVEVIDI 172
>AT5G19530.1 | Symbols: ACL5 | ACL5 (ACAULIS 5); spermine synthase/
thermospermine synthase | chr5:6589176-6591091 REVERSE
Length = 339
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 72 YKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLPLCSIPNP 131
+ + VL G SEYQD+ + + GK+++++G +Q E+DEF+Y E L H L PNP
Sbjct: 48 FALNSVLHQGTSEYQDIALLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNP 107
Query: 132 KKVXXXXXXXXXXXREISRHSSVNQI 157
K V REI +H+++ ++
Sbjct: 108 KTVFIMGGGEGSAAREILKHTTIEKV 133
>AT5G19530.2 | Symbols: ACL5 | ACL5 (ACAULIS 5); spermine synthase/
thermospermine synthase | chr5:6589176-6591070 REVERSE
Length = 332
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 72 YKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLPLCSIPNP 131
+ + VL G SEYQD+ + + GK+++++G +Q E+DEF+Y E L H L PNP
Sbjct: 41 FALNSVLHQGTSEYQDIALLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNP 100
Query: 132 KKVXXXXXXXXXXXREISRHSSVNQI 157
K V REI +H+++ ++
Sbjct: 101 KTVFIMGGGEGSAAREILKHTTIEKV 126