Jatropha Genome Database

JcCB0368291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.20 - phase: 0 
         (84 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16990.2 | Symbols:  | tetracycline transporter | chr2:738319...    67   2e-12
AT2G16990.1 | Symbols:  | tetracycline transporter | chr2:738319...    67   2e-12
AT2G16980.1 | Symbols:  | tetracycline transporter | chr2:737637...    60   4e-10
AT2G16980.2 | Symbols:  | tetracycline transporter | chr2:737637...    60   4e-10
AT2G16970.1 | Symbols: MEE15 | MEE15 (maternal effect embryo arr...    59   5e-10

>AT2G16990.2 | Symbols:  | tetracycline transporter |
          chr2:7383194-7387783 FORWARD
          Length = 456

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 2  EKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDE-CSLAIYLSGFQQ 54
          + + GL H+  T FL  F+ +MVVP ITDVT++A+C G D+ CSLA+YL+GFQQ
Sbjct: 3  DGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQ 56


>AT2G16990.1 | Symbols:  | tetracycline transporter |
          chr2:7383194-7387783 FORWARD
          Length = 456

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 2  EKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDE-CSLAIYLSGFQQ 54
          + + GL H+  T FL  F+ +MVVP ITDVT++A+C G D+ CSLA+YL+GFQQ
Sbjct: 3  DGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQ 56


>AT2G16980.1 | Symbols:  | tetracycline transporter |
          chr2:7376376-7380525 FORWARD
          Length = 408

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 3  KLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDE-CSLAIYLSGFQQ 54
          +L  L HL +T FL   + Y++ P +TDVT++A+C G D+ CSLA+YL+G QQ
Sbjct: 5  RLGELRHLLVTVFLSGLAEYLIRPVMTDVTVAAVCSGLDDSCSLAVYLTGVQQ 57


>AT2G16980.2 | Symbols:  | tetracycline transporter |
          chr2:7376376-7380944 FORWARD
          Length = 461

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 3  KLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDE-CSLAIYLSGFQQ 54
          +L  L HL +T FL   + Y++ P +TDVT++A+C G D+ CSLA+YL+G QQ
Sbjct: 5  RLGELRHLLVTVFLSGLAEYLIRPVMTDVTVAAVCSGLDDSCSLAVYLTGVQQ 57


>AT2G16970.1 | Symbols: MEE15 | MEE15 (maternal effect embryo
          arrest 15); tetracycline transporter |
          chr2:7369549-7375528 FORWARD
          Length = 446

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 3  KLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDE-CSLAIYLSGFQQ 54
          +L  L HL  T FL  FS ++V P +TDVT++A+C G +E CSLA+YL+G +Q
Sbjct: 5  RLGELRHLLTTVFLSGFSEFLVKPVMTDVTVAAVCSGLNETCSLAVYLTGVEQ 57