Jatropha Genome Database

JcCB0367641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367641.10 - phase: 0 /pseudo/partial
         (271 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25930.1 | Symbols: ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); p...    63   2e-10

>AT2G25930.1 | Symbols: ELF3, PYK20 | ELF3 (EARLY FLOWERING 3);
           protein C-terminus binding / transcription factor |
           chr2:11059459-11063178 FORWARD
          Length = 695

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 9/181 (4%)

Query: 52  LRLDTRNQSEEKLEVCVSS-RDHSVRSSTKFATRKK--IASLGDAYQNQQNPDLPGANFS 108
           +R    NQ+  K  VC+++     VR   K   R    + SL  +   + + +   ++  
Sbjct: 164 IRFQEVNQTGSKQNVCLATCSKPEVRDQVKANARSGGFVISLDVSVTEEIDLEKSASSHD 223

Query: 109 RFCENDDFLQQESTAFLQQDNSGNGEGVPELTREIEKGNIFCPRSDSLSREDCSSPNKPE 168
           R  + +  L+QES   L +D      G     ++ + G      +++ S+E   SP   +
Sbjct: 224 RVNDYNASLRQESRNRLYRD------GGKTRLKDTDNGAESHLATENHSQEGHGSPEDID 277

Query: 169 IDCELSGEKTCRSLQFGNGDKSDDVSETSMVDSISALDISPDEVVGIIGQKHFWKARRAI 228
            D E S  + C SLQ  N + SDDVS+ SMVDSIS++D+SPD+VVGI+GQK FW+AR+AI
Sbjct: 278 NDREYSKSRACASLQQINEEASDDVSDDSMVDSISSIDVSPDDVVGILGQKRFWRARKAI 337

Query: 229 V 229
            
Sbjct: 338 A 338